Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46752 * 2 1 4 4 C 1.52990 * 109.47032 * 120.00011 * 2 1 3 5 5 H 1.09001 * 109.47464 * 304.62921 * 4 2 1 6 6 C 1.52993 * 109.47464 * 64.63464 * 4 2 1 7 7 N 1.46503 * 109.47633 * 174.99982 * 6 4 2 8 8 C 1.34778 * 120.00231 * 180.02562 * 7 6 4 9 9 O 1.21608 * 119.99648 * 359.97438 * 8 7 6 10 10 C 1.47447 * 120.00088 * 180.02562 * 8 7 6 11 11 C 1.37976 * 124.15732 * 179.97438 * 10 8 7 12 12 S 1.72094 * 104.03432 * 179.97438 * 11 10 8 13 13 N 1.56406 * 96.15525 * 359.97438 * 12 11 10 14 14 N 1.27414 * 109.87375 * 359.75231 * 13 12 11 15 15 N 1.46904 * 109.47225 * 184.63443 * 4 2 1 16 16 C 1.46900 * 110.99611 * 301.50548 * 15 4 2 17 17 C 1.50709 * 109.46921 * 185.78229 * 16 15 4 18 18 O 1.21286 * 120.00050 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99686 * 179.72555 * 17 16 15 20 20 C 1.37099 * 120.00134 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99173 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00280 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00040 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47164 * 90.00271 * 24 22 20 26 26 H 1.48503 * 109.47216 * 209.99628 * 24 22 20 27 27 H 1.48495 * 109.47528 * 329.99798 * 24 22 20 28 28 H 1.09004 * 109.46991 * 299.99935 * 1 2 3 29 29 H 1.09006 * 109.47191 * 59.99715 * 1 2 3 30 30 H 1.08996 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47137 * 240.00323 * 2 1 3 32 32 H 1.09000 * 109.46825 * 183.44082 * 3 2 1 33 33 H 1.08999 * 109.46867 * 303.44048 * 3 2 1 34 34 H 1.08994 * 109.46919 * 63.44516 * 3 2 1 35 35 H 1.09003 * 109.47328 * 295.00002 * 6 4 2 36 36 H 1.09001 * 109.47216 * 54.99717 * 6 4 2 37 37 H 0.97003 * 119.99361 * 359.97438 * 7 6 4 38 38 H 1.08005 * 127.97827 * 359.94687 * 11 10 8 39 39 H 1.00903 * 111.00357 * 65.45744 * 15 4 2 40 40 H 1.09003 * 109.47190 * 65.78562 * 16 15 4 41 41 H 1.08993 * 109.47384 * 305.78541 * 16 15 4 42 42 H 0.97010 * 120.00182 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00121 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6105 -0.2575 2.1373 6 6 1.6274 -2.1934 1.1923 7 7 2.2159 -2.9097 2.3267 8 6 1.9874 -4.2288 2.4826 9 8 1.2923 -4.8243 1.6819 10 6 2.5793 -4.9496 3.6246 11 6 2.4017 -6.2963 3.8669 12 16 3.3042 -6.5845 5.3035 13 7 3.8029 -5.1134 5.4862 14 7 3.3543 -4.3837 4.5430 15 7 3.5048 -0.6251 1.3065 16 6 4.1179 -1.2093 0.1062 17 6 5.6168 -1.2216 0.2631 18 8 6.1241 -0.7870 1.2754 19 7 6.3930 -1.7211 -0.7189 20 6 7.7565 -1.7329 -0.5760 21 1 8.2084 -1.3414 0.3234 22 6 8.5567 -2.2484 -1.5882 23 7 9.8637 -2.2591 -1.4514 24 14 7.7748 -2.9261 -3.1433 25 1 7.6397 -1.8375 -4.1444 26 1 8.6310 -4.0052 -3.6982 27 1 6.4322 -3.4743 -2.8240 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1282 1.4432 -0.0617 33 1 1.6271 1.9739 -0.8575 34 1 1.7279 1.9382 0.9192 35 1 0.5410 -2.2684 1.2394 36 1 1.9820 -2.6344 0.2607 37 1 2.7707 -2.4347 2.9651 38 1 1.8282 -7.0057 3.2886 39 1 3.7997 0.3314 1.4341 40 1 3.8489 -0.6134 -0.7660 41 1 3.7580 -2.2296 -0.0258 42 1 5.9870 -2.0724 -1.5269 43 1 10.4224 -2.6187 -2.1581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667478626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 3.880763 kcal Electronic energy + Delta-G solvation = -27622.329475 eV Core-core repulsion = 23637.489021 eV Total energy + Delta-G solvation = -3984.840454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22822 -39.74427 -38.75553 -37.70842 -34.46579 -34.03281 -32.94074 -32.33918 -31.62713 -29.19920 -27.56526 -27.27244 -26.23215 -24.39854 -23.66646 -22.14364 -20.94077 -20.19439 -19.41888 -18.97564 -18.29447 -17.01462 -16.84211 -16.17806 -16.13899 -15.65482 -15.56167 -14.93187 -14.85590 -14.75837 -14.42190 -14.05249 -13.89198 -13.49574 -13.17418 -12.91261 -12.78377 -12.58594 -12.46133 -12.34992 -12.28016 -12.16080 -11.82593 -11.56509 -11.29905 -11.08343 -10.99987 -10.74916 -10.58536 -10.55390 -10.31650 -10.28572 -10.11987 -9.96151 -9.54984 -9.11777 -8.61121 -8.17974 -8.13332 -6.29440 -3.80580 -0.14317 0.70674 1.30179 1.33953 2.96337 3.03982 3.06872 3.07181 3.15673 3.67448 3.76561 4.08519 4.12433 4.46633 4.48645 4.59507 4.76825 4.78180 4.85009 5.11300 5.12464 5.17935 5.21746 5.39747 5.42786 5.47054 5.60854 5.66133 5.69091 5.78639 5.80365 5.89463 5.95366 6.07698 6.14858 6.30288 7.01062 7.21130 7.48833 7.53707 7.59923 8.02351 8.16635 8.61806 8.97193 9.44576 9.85419 10.83818 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007284 B = 0.003910 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3843.218520 B = 7159.501127 C = 9726.932616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.151 4.151 4 C 0.078 3.922 5 H 0.093 0.907 6 C 0.124 3.876 7 N -0.691 5.691 8 C 0.602 3.398 9 O -0.536 6.536 10 C -0.020 4.020 11 C -0.239 4.239 12 S 0.453 5.547 13 N -0.284 5.284 14 N -0.201 5.201 15 N -0.658 5.658 16 C 0.041 3.959 17 C 0.451 3.549 18 O -0.561 6.561 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.878 3.122 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.422 0.578 38 H 0.208 0.792 39 H 0.356 0.644 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.369 0.631 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.958 -4.529 6.860 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.209 4.209 4 C -0.033 4.033 5 H 0.111 0.889 6 C 0.000 4.000 7 N -0.342 5.342 8 C 0.383 3.617 9 O -0.413 6.413 10 C -0.167 4.167 11 C -0.396 4.396 12 S 0.589 5.411 13 N -0.264 5.264 14 N -0.072 5.072 15 N -0.291 5.291 16 C -0.092 4.092 17 C 0.237 3.763 18 O -0.442 6.442 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.704 3.296 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.260 0.740 38 H 0.225 0.775 39 H 0.177 0.823 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.202 0.798 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.677 -5.081 8.839 23.054 hybrid contribution -1.119 0.377 -3.187 3.399 sum -21.797 -4.704 5.652 23.003 Atomic orbital electron populations 1.21857 0.94702 1.01983 1.01914 1.21822 0.96646 0.97108 0.99507 1.21864 1.01496 0.95371 1.02150 1.21966 0.89146 0.94096 0.98083 0.88869 1.21574 0.97974 0.91007 0.89418 1.45682 1.51379 1.08018 1.29109 1.16635 0.80287 0.82103 0.82648 1.90822 1.39236 1.67706 1.43502 1.22679 1.02135 0.92421 0.99509 1.28855 1.06420 0.99605 1.04715 1.81518 1.29352 1.16973 1.13256 1.78727 1.23688 1.03072 1.20949 1.71569 1.08119 1.28622 0.98858 1.60169 1.04240 1.26200 1.38460 1.21801 0.94583 1.00778 0.92035 1.19701 0.87448 0.84165 0.85005 1.90572 1.74695 1.49956 1.29004 1.42213 1.07444 1.56300 1.17243 1.19424 0.78993 1.38731 1.06053 0.86297 1.25021 0.95277 0.97723 0.98094 1.69621 1.03040 1.45548 1.34024 0.86700 0.79335 0.79712 0.83833 1.19637 1.20176 1.19530 0.92510 0.92647 0.92315 0.90516 0.92234 0.92318 0.92287 0.90536 0.91046 0.73956 0.77543 0.82288 0.93283 0.89539 0.79821 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.94 37.16 0.33 -0.76 16 2 C -0.13 -1.16 1.94 -90.62 -0.18 -1.34 16 3 C -0.15 -1.36 8.57 37.16 0.32 -1.04 16 4 C 0.08 0.80 2.29 -67.72 -0.15 0.65 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 6 C 0.12 1.39 4.33 -4.04 -0.02 1.38 16 7 N -0.69 -8.98 5.39 -61.37 -0.33 -9.31 16 8 C 0.60 8.49 7.81 -12.51 -0.10 8.39 16 9 O -0.54 -8.45 16.80 5.27 0.09 -8.36 16 10 C -0.02 -0.26 6.87 -83.78 -0.58 -0.84 16 11 C -0.24 -2.29 11.21 30.64 0.34 -1.95 16 12 S 0.45 3.75 23.38 -107.50 -2.51 1.23 16 13 N -0.28 -3.67 12.49 60.35 0.75 -2.92 16 14 N -0.20 -2.88 11.24 32.73 0.37 -2.51 16 15 N -0.66 -9.14 5.21 -107.99 -0.56 -9.70 16 16 C 0.04 0.65 5.16 -4.97 -0.03 0.62 16 17 C 0.45 10.18 7.84 -10.98 -0.09 10.09 16 18 O -0.56 -14.94 15.90 5.55 0.09 -14.85 16 19 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 20 C -0.30 -8.67 10.16 -14.93 -0.15 -8.83 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 24 Si 0.88 19.69 27.73 -169.99 -4.71 14.98 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.58 6.52 56.52 0.37 -5.22 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.43 6.67 -51.93 -0.35 0.09 16 31 H 0.08 0.74 6.78 -51.93 -0.35 0.39 16 32 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.77 6.80 -51.93 -0.35 0.41 16 36 H 0.07 0.88 6.58 -51.93 -0.34 0.53 16 37 H 0.42 5.76 7.72 -40.82 -0.32 5.44 16 38 H 0.21 1.47 8.06 -52.48 -0.42 1.04 16 39 H 0.36 5.05 7.11 -39.29 -0.28 4.77 16 40 H 0.05 0.68 6.31 -51.93 -0.33 0.36 16 41 H 0.09 1.34 6.16 -51.93 -0.32 1.02 16 42 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -35.23 369.33 -6.22 -41.45 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -5.30 Total: 16.57 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.39 Total: 7.44 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.95 Total: -64.02 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.18 Total: -23.22 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.98 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.51 Total: 1.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.23 -6.22 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667478626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.328 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds