Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.52994 * 109.47133 * 120.00391 * 2 1 3 5 5 H 1.09005 * 109.47350 * 294.55202 * 4 2 1 6 6 C 1.52995 * 109.47547 * 174.55016 * 4 2 1 7 7 N 1.46504 * 109.47723 * 184.99964 * 6 4 2 8 8 C 1.34775 * 120.00235 * 179.97438 * 7 6 4 9 9 O 1.21608 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.47447 * 119.99922 * 179.97438 * 8 7 6 11 11 C 1.37978 * 124.15617 * 180.02562 * 10 8 7 12 12 S 1.72099 * 104.03361 * 179.97438 * 11 10 8 13 13 N 1.56396 * 96.15661 * 359.97438 * 12 11 10 14 14 N 1.27419 * 109.87561 * 359.75323 * 13 12 11 15 15 N 1.46905 * 109.47417 * 54.54849 * 4 2 1 16 16 C 1.46905 * 110.99735 * 63.84354 * 15 4 2 17 17 C 1.50695 * 109.46735 * 182.88751 * 16 15 4 18 18 O 1.21296 * 120.00591 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99884 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00238 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00183 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00154 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00190 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46907 * 89.99927 * 24 22 20 26 26 H 1.48496 * 109.46917 * 210.00080 * 24 22 20 27 27 H 1.48497 * 109.46986 * 330.00074 * 24 22 20 28 28 H 1.08996 * 109.47187 * 294.74788 * 1 2 3 29 29 H 1.09008 * 109.47187 * 54.74305 * 1 2 3 30 30 H 1.09005 * 109.47377 * 174.74153 * 1 2 3 31 31 H 1.09007 * 109.46826 * 240.00137 * 2 1 3 32 32 H 1.08993 * 109.46809 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47296 * 300.00191 * 3 2 1 34 34 H 1.09002 * 109.46585 * 60.00238 * 3 2 1 35 35 H 1.09001 * 109.46907 * 64.99731 * 6 4 2 36 36 H 1.09000 * 109.47046 * 304.99970 * 6 4 2 37 37 H 0.97000 * 119.99409 * 0.02562 * 7 6 4 38 38 H 1.08001 * 127.98054 * 359.94850 * 11 10 8 39 39 H 1.00895 * 111.00102 * 187.80220 * 15 4 2 40 40 H 1.08993 * 109.47328 * 302.88906 * 16 15 4 41 41 H 1.08997 * 109.46540 * 62.89219 * 16 15 4 42 42 H 0.97003 * 119.99952 * 359.97438 * 19 17 16 43 43 H 0.96999 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.7585 -0.1543 2.1365 6 6 3.5638 -0.8411 1.1826 7 7 4.0414 -1.6350 2.3175 8 6 5.3595 -1.8738 2.4657 9 8 6.1525 -1.4300 1.6576 10 6 5.8401 -2.6724 3.6082 11 6 7.1672 -2.9682 3.8429 12 16 7.1369 -3.9069 5.2850 13 7 5.5855 -3.8662 5.4790 14 7 5.0493 -3.1899 4.5416 15 7 1.4458 -2.0632 1.3167 16 6 1.8782 -2.8881 0.1806 17 6 1.1949 -4.2297 0.2453 18 8 0.4232 -4.4744 1.1486 19 7 1.4411 -5.1577 -0.7006 20 6 0.8191 -6.3780 -0.6421 21 1 0.1321 -6.5959 0.1622 22 6 1.0726 -7.3345 -1.6176 23 7 0.4768 -8.5044 -1.5612 24 14 2.2605 -6.9573 -3.0091 25 1 3.6334 -7.3594 -2.6106 26 1 1.8564 -7.7115 -4.2228 27 1 2.2358 -5.5013 -3.2999 28 1 -0.3633 0.4302 0.9332 29 1 -0.3634 0.5933 -0.8392 30 1 -0.3634 -1.0234 -0.0942 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 4.0084 0.1533 1.2221 36 1 3.8494 -1.3301 0.2513 37 1 3.4088 -1.9893 2.9618 38 1 8.0266 -2.6780 3.2567 39 1 1.6648 -2.5118 2.1935 40 1 1.6131 -2.3899 -0.7518 41 1 2.9583 -3.0280 0.2236 42 1 2.0579 -4.9618 -1.4232 43 1 0.6535 -9.1720 -2.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667478627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = 5.434708 kcal Electronic energy + Delta-G solvation = -27623.863057 eV Core-core repulsion = 23639.089987 eV Total energy + Delta-G solvation = -3984.773070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40895 -39.90685 -38.75368 -37.67995 -34.61698 -34.05513 -33.05054 -32.47839 -31.63672 -29.12390 -27.49136 -27.26667 -26.27641 -24.46939 -23.81165 -22.23388 -21.12784 -20.19388 -19.49947 -19.04515 -18.25719 -17.23809 -16.70868 -16.36567 -16.31305 -15.76080 -15.53783 -15.21243 -14.76822 -14.71475 -14.50364 -14.15880 -13.73108 -13.56852 -13.15147 -13.02279 -12.93747 -12.53269 -12.46571 -12.41195 -12.22203 -12.00199 -11.72000 -11.66855 -11.18756 -11.03702 -10.88522 -10.71380 -10.59740 -10.53876 -10.44297 -10.43700 -10.27124 -9.96483 -9.55690 -9.39147 -8.61384 -8.20557 -8.15098 -6.29909 -3.81057 -0.28882 0.56062 1.11466 1.19019 2.75206 2.84143 3.03294 3.07443 3.15510 3.48323 3.75718 4.05489 4.11585 4.32399 4.48418 4.52514 4.65635 4.91565 4.93703 4.98801 5.08698 5.20596 5.23018 5.40107 5.55087 5.59073 5.64496 5.73637 5.81194 5.88219 5.92059 5.94433 6.00216 6.12662 6.30671 6.55631 6.95779 7.00704 7.25442 7.46184 7.59157 7.76411 8.16005 8.61084 8.96539 9.43963 9.84450 10.83291 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007332 B = 0.003865 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.201852 B = 7242.998210 C = 9755.727382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.081 3.919 5 H 0.093 0.907 6 C 0.077 3.923 7 N -0.708 5.708 8 C 0.607 3.393 9 O -0.525 6.525 10 C -0.024 4.024 11 C -0.238 4.238 12 S 0.464 5.536 13 N -0.283 5.283 14 N -0.207 5.207 15 N -0.652 5.652 16 C 0.040 3.960 17 C 0.451 3.549 18 O -0.562 6.562 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.878 3.122 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.410 0.590 38 H 0.209 0.791 39 H 0.349 0.651 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.369 0.631 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.999 17.745 8.339 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.030 4.030 5 H 0.111 0.889 6 C -0.048 4.048 7 N -0.360 5.360 8 C 0.388 3.612 9 O -0.401 6.401 10 C -0.172 4.172 11 C -0.395 4.395 12 S 0.600 5.400 13 N -0.264 5.264 14 N -0.077 5.077 15 N -0.284 5.284 16 C -0.092 4.092 17 C 0.237 3.763 18 O -0.443 6.443 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.704 3.296 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.247 0.753 38 H 0.226 0.774 39 H 0.169 0.831 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.202 0.798 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.860 16.889 9.555 23.846 hybrid contribution 1.779 0.490 -2.072 2.775 sum 15.639 17.380 7.482 24.548 Atomic orbital electron populations 1.21670 0.93600 1.03185 1.00827 1.21096 0.97445 0.95240 0.96725 1.21915 1.00862 0.95944 1.02070 1.22022 0.88830 0.91895 1.00253 0.88915 1.22389 0.97145 0.96220 0.89033 1.45813 1.07112 1.53944 1.29116 1.16596 0.82777 0.79117 0.82671 1.90843 1.55039 1.51386 1.42794 1.22645 0.90182 1.05066 0.99269 1.28885 1.01833 1.04084 1.04671 1.81572 1.10688 1.35236 1.12530 1.78687 1.06639 1.19849 1.21226 1.71547 1.30525 1.06734 0.98936 1.60214 1.61073 1.01624 1.05452 1.21818 0.97426 0.94011 0.95963 1.19688 0.86432 0.85423 0.84805 1.90573 1.38231 1.79841 1.35697 1.42208 1.41866 1.14449 1.24582 1.19427 1.23810 0.87762 1.12242 0.86271 1.25021 0.97806 0.95348 0.97907 1.69618 1.42311 1.05037 1.35215 0.86703 0.81676 0.78538 0.82676 1.19740 1.20125 1.19464 0.92889 0.93556 0.90856 0.90962 0.92664 0.92371 0.92519 0.90323 0.90499 0.75295 0.77438 0.83106 0.89103 0.93607 0.79803 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.88 37.16 0.33 -1.17 16 2 C -0.09 -0.85 2.07 -90.62 -0.19 -1.04 16 3 C -0.15 -1.20 8.96 37.16 0.33 -0.86 16 4 C 0.08 0.85 2.29 -67.72 -0.16 0.69 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 6 C 0.08 0.82 4.15 -4.04 -0.02 0.80 16 7 N -0.71 -8.12 5.36 -61.37 -0.33 -8.45 16 8 C 0.61 7.76 7.81 -12.51 -0.10 7.67 16 9 O -0.53 -7.76 16.80 5.27 0.09 -7.67 16 10 C -0.02 -0.28 6.87 -83.78 -0.58 -0.86 16 11 C -0.24 -2.01 11.21 30.64 0.34 -1.66 16 12 S 0.46 3.32 23.38 -107.50 -2.51 0.81 16 13 N -0.28 -3.29 12.49 60.35 0.75 -2.53 16 14 N -0.21 -2.63 11.24 32.73 0.37 -2.26 16 15 N -0.65 -9.22 5.03 -107.99 -0.54 -9.76 16 16 C 0.04 0.65 5.33 -4.98 -0.03 0.63 16 17 C 0.45 10.19 7.83 -10.99 -0.09 10.10 16 18 O -0.56 -14.96 15.84 5.54 0.09 -14.88 16 19 N -0.59 -14.22 5.09 -10.97 -0.06 -14.28 16 20 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 23 N -0.88 -26.00 13.96 55.50 0.77 -25.22 16 24 Si 0.88 19.68 27.74 -169.99 -4.71 14.96 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 1.02 7.65 -51.93 -0.40 0.62 16 31 H 0.07 0.75 6.71 -51.93 -0.35 0.41 16 32 H 0.05 0.42 6.69 -51.93 -0.35 0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.77 6.83 -51.93 -0.35 0.41 16 36 H 0.08 0.90 6.71 -51.93 -0.35 0.55 16 37 H 0.41 4.61 6.79 -40.82 -0.28 4.33 16 38 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.35 5.17 7.21 -39.29 -0.28 4.88 16 40 H 0.09 1.33 6.38 -51.93 -0.33 1.00 16 41 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 42 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -35.07 370.43 -6.24 -41.31 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.35 Total: 15.85 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.39 Total: 6.53 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.97 Total: -62.50 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.18 Total: -22.55 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.96 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.51 Total: 0.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.07 -6.24 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667478627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.743 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds