Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.52994 * 109.47133 * 120.00391 * 2 1 3 5 5 H 1.09005 * 109.47350 * 294.55202 * 4 2 1 6 6 C 1.52995 * 109.47547 * 174.55016 * 4 2 1 7 7 N 1.46504 * 109.47723 * 184.99964 * 6 4 2 8 8 C 1.34775 * 120.00235 * 179.97438 * 7 6 4 9 9 O 1.21608 * 119.99982 * 0.02562 * 8 7 6 10 10 C 1.47447 * 119.99922 * 179.97438 * 8 7 6 11 11 C 1.37978 * 124.15617 * 180.02562 * 10 8 7 12 12 S 1.72099 * 104.03361 * 179.97438 * 11 10 8 13 13 N 1.56396 * 96.15661 * 359.97438 * 12 11 10 14 14 N 1.27419 * 109.87561 * 359.75323 * 13 12 11 15 15 N 1.46905 * 109.47417 * 54.54849 * 4 2 1 16 16 C 1.46905 * 110.99735 * 63.84354 * 15 4 2 17 17 C 1.50695 * 109.46735 * 182.88751 * 16 15 4 18 18 O 1.21296 * 120.00591 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99884 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00238 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00183 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00154 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00190 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46907 * 89.99927 * 24 22 20 26 26 H 1.48496 * 109.46917 * 210.00080 * 24 22 20 27 27 H 1.48497 * 109.46986 * 330.00074 * 24 22 20 28 28 H 1.08996 * 109.47187 * 294.74788 * 1 2 3 29 29 H 1.09008 * 109.47187 * 54.74305 * 1 2 3 30 30 H 1.09005 * 109.47377 * 174.74153 * 1 2 3 31 31 H 1.09007 * 109.46826 * 240.00137 * 2 1 3 32 32 H 1.08993 * 109.46809 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47296 * 300.00191 * 3 2 1 34 34 H 1.09002 * 109.46585 * 60.00238 * 3 2 1 35 35 H 1.09001 * 109.46907 * 64.99731 * 6 4 2 36 36 H 1.09000 * 109.47046 * 304.99970 * 6 4 2 37 37 H 0.97000 * 119.99409 * 0.02562 * 7 6 4 38 38 H 1.08001 * 127.98054 * 359.94850 * 11 10 8 39 39 H 1.00895 * 111.00102 * 187.80220 * 15 4 2 40 40 H 1.08993 * 109.47328 * 302.88906 * 16 15 4 41 41 H 1.08997 * 109.46540 * 62.89219 * 16 15 4 42 42 H 0.97003 * 119.99952 * 359.97438 * 19 17 16 43 43 H 0.96999 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.7585 -0.1543 2.1365 6 6 3.5638 -0.8411 1.1826 7 7 4.0414 -1.6350 2.3175 8 6 5.3595 -1.8738 2.4657 9 8 6.1525 -1.4300 1.6576 10 6 5.8401 -2.6724 3.6082 11 6 7.1672 -2.9682 3.8429 12 16 7.1369 -3.9069 5.2850 13 7 5.5855 -3.8662 5.4790 14 7 5.0493 -3.1899 4.5416 15 7 1.4458 -2.0632 1.3167 16 6 1.8782 -2.8881 0.1806 17 6 1.1949 -4.2297 0.2453 18 8 0.4232 -4.4744 1.1486 19 7 1.4411 -5.1577 -0.7006 20 6 0.8191 -6.3780 -0.6421 21 1 0.1321 -6.5959 0.1622 22 6 1.0726 -7.3345 -1.6176 23 7 0.4768 -8.5044 -1.5612 24 14 2.2605 -6.9573 -3.0091 25 1 3.6334 -7.3594 -2.6106 26 1 1.8564 -7.7115 -4.2228 27 1 2.2358 -5.5013 -3.2999 28 1 -0.3633 0.4302 0.9332 29 1 -0.3634 0.5933 -0.8392 30 1 -0.3634 -1.0234 -0.0942 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 4.0084 0.1533 1.2221 36 1 3.8494 -1.3301 0.2513 37 1 3.4088 -1.9893 2.9618 38 1 8.0266 -2.6780 3.2567 39 1 1.6648 -2.5118 2.1935 40 1 1.6131 -2.3899 -0.7518 41 1 2.9583 -3.0280 0.2236 42 1 2.0579 -4.9618 -1.4232 43 1 0.6535 -9.1720 -2.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667478627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = -24.419618 kcal Electronic energy + Delta-G solvation = -27625.157638 eV Core-core repulsion = 23639.089987 eV Total energy + Delta-G solvation = -3986.067651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21580 -40.93256 -40.19192 -38.99106 -36.04494 -35.49834 -34.21430 -33.72987 -33.26136 -30.14532 -28.64705 -28.08227 -27.31717 -26.00472 -24.92571 -23.09083 -21.97458 -21.53310 -20.89427 -20.36949 -19.73032 -18.20733 -18.00736 -17.28274 -17.21054 -17.03452 -16.64127 -16.46184 -16.22047 -15.73664 -15.62403 -15.38390 -15.08376 -14.73587 -14.62036 -14.29319 -14.02160 -13.94814 -13.70550 -13.30414 -13.14973 -13.07768 -12.87977 -12.80256 -12.59539 -12.43761 -12.00657 -11.90004 -11.72859 -11.54803 -11.51291 -11.35902 -11.28736 -11.22070 -10.95010 -10.45501 -10.28561 -10.26180 -9.39381 -8.42953 -6.03350 -0.97719 -0.07891 0.25658 0.49762 1.27223 1.31825 1.40864 1.88952 1.93956 1.95740 2.20129 2.65458 2.73743 3.13246 3.35136 3.57937 3.63311 3.76984 3.95743 4.08269 4.14684 4.29841 4.31886 4.33081 4.42047 4.52477 4.63279 4.80921 4.89724 4.95083 5.09320 5.16899 5.18226 5.36289 5.50012 5.53704 5.62992 5.87368 5.99502 6.08286 6.30600 6.45464 6.57675 6.85084 6.86648 7.37908 7.94506 8.74766 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007332 B = 0.003865 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.201852 B = 7242.998210 C = 9755.727382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.144 4.144 4 C 0.089 3.911 5 H 0.107 0.893 6 C 0.081 3.919 7 N -0.706 5.706 8 C 0.606 3.394 9 O -0.550 6.550 10 C -0.051 4.051 11 C -0.235 4.235 12 S 0.562 5.438 13 N -0.335 5.335 14 N -0.237 5.237 15 N -0.664 5.664 16 C 0.060 3.940 17 C 0.450 3.550 18 O -0.608 6.608 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.056 0.944 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.233 1.233 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.233 0.767 39 H 0.343 0.657 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.387 0.613 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.115 20.106 7.069 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 C -0.202 4.202 4 C -0.021 4.021 5 H 0.125 0.875 6 C -0.044 4.044 7 N -0.357 5.357 8 C 0.388 3.612 9 O -0.427 6.427 10 C -0.199 4.199 11 C -0.392 4.392 12 S 0.697 5.303 13 N -0.316 5.316 14 N -0.106 5.106 15 N -0.295 5.295 16 C -0.072 4.072 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.211 4.211 23 N -0.574 5.574 24 Si 0.780 3.220 25 H -0.184 1.184 26 H -0.197 1.197 27 H -0.156 1.156 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.249 0.751 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.222 0.778 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.958 19.289 8.296 26.989 hybrid contribution 0.814 -0.278 -1.490 1.721 sum 17.772 19.010 6.805 26.899 Atomic orbital electron populations 1.21620 0.94597 1.01263 1.01493 1.21102 0.96464 0.96639 0.96097 1.21862 1.01269 0.94268 1.02798 1.22088 0.88780 0.89792 1.01436 0.87538 1.22396 0.96777 0.96753 0.88429 1.45867 1.06940 1.53684 1.29202 1.16765 0.82824 0.78894 0.82727 1.90816 1.55532 1.52610 1.43768 1.22641 0.91435 1.06313 0.99515 1.29303 1.01489 1.03103 1.05272 1.81166 1.06829 1.32214 1.10074 1.78330 1.10037 1.21157 1.22071 1.71575 1.31827 1.07648 0.99530 1.60207 1.62057 1.02785 1.04474 1.21648 0.97362 0.90368 0.97863 1.20935 0.85146 0.87070 0.83073 1.90551 1.40162 1.81158 1.37340 1.42048 1.42287 1.13313 1.25817 1.19002 1.24443 0.90527 1.11658 0.92568 1.26051 0.99724 0.94409 1.00924 1.69795 1.44294 1.06528 1.36786 0.85436 0.78417 0.80540 0.77615 1.18422 1.19702 1.15603 0.92678 0.92388 0.94096 0.91055 0.91923 0.91676 0.91849 0.88885 0.91099 0.75268 0.75087 0.83758 0.86778 0.91819 0.77768 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.88 71.98 0.64 -2.10 16 2 C -0.08 -1.45 2.07 -10.80 -0.02 -1.48 16 3 C -0.14 -1.84 8.96 71.98 0.64 -1.19 16 4 C 0.09 1.70 2.29 44.91 0.10 1.80 16 5 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 6 C 0.08 1.54 4.15 86.38 0.36 1.90 16 7 N -0.71 -15.45 5.36 -466.34 -2.50 -17.96 16 8 C 0.61 14.86 7.81 86.67 0.68 15.54 16 9 O -0.55 -15.40 16.80 -4.06 -0.07 -15.47 16 10 C -0.05 -1.14 6.87 41.36 0.28 -0.86 16 11 C -0.23 -3.48 11.21 67.76 0.76 -2.72 16 12 S 0.56 6.85 23.38 -56.49 -1.32 5.52 16 13 N -0.34 -7.60 12.49 37.02 0.46 -7.13 16 14 N -0.24 -5.99 11.24 -50.35 -0.57 -6.56 16 15 N -0.66 -18.33 5.03 -495.58 -2.49 -20.83 16 16 C 0.06 1.86 5.33 85.55 0.46 2.32 16 17 C 0.45 20.64 7.83 87.65 0.69 21.32 16 18 O -0.61 -33.92 15.84 -3.08 -0.05 -33.97 16 19 N -0.59 -28.66 5.09 -306.99 -1.56 -30.23 16 20 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 21 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.93 -56.96 13.96 21.66 0.30 -56.66 16 24 Si 0.96 39.69 27.74 68.60 1.90 41.60 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.04 1.11 7.65 -2.38 -0.02 1.09 16 31 H 0.07 1.27 6.71 -2.38 -0.02 1.26 16 32 H 0.06 0.73 6.69 -2.39 -0.02 0.71 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.55 6.83 -2.39 -0.02 1.54 16 36 H 0.07 1.47 6.71 -2.39 -0.02 1.45 16 37 H 0.41 9.11 6.79 -92.71 -0.63 8.48 16 38 H 0.23 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.34 10.22 7.21 -89.70 -0.65 9.57 16 40 H 0.11 3.07 6.38 -2.39 -0.02 3.06 16 41 H 0.06 1.80 6.52 -2.39 -0.02 1.78 16 42 H 0.39 15.77 5.76 -92.71 -0.53 15.23 16 43 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.36 370.43 -0.76 -83.12 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.77 Total: 42.91 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.91 Total: 15.66 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -6.36 Total: -139.36 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.12 Total: -49.44 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.90 Total: 41.60 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.32 Total: 5.52 kcal Total: -82.36 -0.76 -83.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667478627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.696 kcal (2) G-P(sol) polarization free energy of solvation -82.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds