Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47437 * 89.97009 * 8 7 5 10 10 C 1.50692 * 109.47060 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00414 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00296 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47043 * 325.00360 * 13 12 10 15 15 C 1.53003 * 109.47455 * 205.00377 * 13 12 10 16 16 N 1.46495 * 109.47060 * 54.99752 * 15 13 12 17 17 C 1.36938 * 120.00091 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99975 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00165 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99709 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46831 * 90.00813 * 21 19 17 23 23 H 1.48498 * 109.46866 * 210.00505 * 21 19 17 24 24 H 1.48497 * 109.47080 * 330.00495 * 21 19 17 25 25 C 1.53001 * 109.47027 * 85.00027 * 13 12 10 26 26 C 1.53000 * 117.49927 * 8.75068 * 25 13 12 27 27 C 1.52994 * 117.50106 * 300.09100 * 25 13 12 28 28 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 29 29 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 30 30 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 31 31 H 1.08997 * 109.47168 * 209.97514 * 8 7 5 32 32 H 1.09003 * 109.47020 * 329.96899 * 8 7 5 33 33 H 1.08997 * 109.47353 * 300.00391 * 9 8 7 34 34 H 1.08998 * 109.46664 * 60.00100 * 9 8 7 35 35 H 0.97005 * 120.00055 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47226 * 174.99947 * 15 13 12 37 37 H 1.09005 * 109.46763 * 295.00052 * 15 13 12 38 38 H 0.97000 * 119.99936 * 0.02562 * 16 15 13 39 39 H 0.97000 * 119.99656 * 179.97438 * 20 19 17 40 40 H 1.09001 * 115.55062 * 154.41637 * 25 13 12 41 41 H 1.09007 * 117.49409 * 359.97438 * 26 25 13 42 42 H 1.08997 * 117.50191 * 145.01242 * 26 25 13 43 43 H 1.08998 * 117.50076 * 214.97632 * 27 25 13 44 44 H 1.09007 * 117.49824 * 359.97228 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8250 -3.0790 1.4418 10 6 1.4293 -4.5330 1.4410 11 8 1.2697 -5.1175 0.3903 12 7 1.2537 -5.1842 2.6078 13 6 0.8685 -6.5977 2.6071 14 1 0.2031 -6.7925 1.7660 15 6 0.1479 -6.9306 3.9151 16 7 -0.9829 -6.0170 4.0960 17 6 -1.7804 -6.1256 5.2038 18 1 -1.5755 -6.8844 5.9445 19 6 -2.8516 -5.2595 5.3755 20 7 -3.1010 -4.3344 4.4731 21 14 -3.9391 -5.4072 6.8871 22 1 -3.3954 -4.5530 7.9733 23 1 -5.3161 -4.9642 6.5514 24 1 -3.9703 -6.8216 7.3382 25 6 2.1206 -7.4675 2.4788 26 6 3.4787 -6.7710 2.5862 27 6 2.9850 -7.2817 1.2302 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.0035 -2.7027 -0.5138 32 1 2.7211 -3.1694 -0.5152 33 1 2.7794 -2.9620 1.9551 34 1 1.0618 -2.4953 1.9564 35 1 1.3818 -4.7169 3.4481 36 1 -0.2166 -7.9572 3.8780 37 1 0.8407 -6.8210 4.7496 38 1 -1.1671 -5.3357 3.4306 39 1 -3.8498 -3.7295 4.5929 40 1 2.0376 -8.4743 2.8882 41 1 3.4800 -5.6930 2.7477 42 1 4.2892 -7.3197 3.0659 43 1 3.4710 -8.1661 0.8184 44 1 2.6614 -6.5400 0.4998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670561602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = 52.929850 kcal Electronic energy + Delta-G solvation = -27497.857721 eV Core-core repulsion = 23480.807738 eV Total energy + Delta-G solvation = -4017.049983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -45.29949 -40.06286 -37.58024 -37.31632 -35.92533 -34.92607 -33.36712 -33.21823 -31.34578 -30.62806 -28.96311 -28.21811 -25.41647 -24.02893 -22.26191 -21.90684 -21.63882 -21.48262 -20.36871 -19.65209 -18.12384 -17.93595 -17.37813 -16.78117 -16.24640 -15.76955 -15.62216 -14.83493 -14.75135 -14.25043 -13.73238 -13.65548 -13.52567 -13.34207 -13.13144 -13.04362 -12.87577 -12.78494 -12.68782 -12.40486 -12.08232 -12.03224 -11.65287 -11.48153 -11.35728 -11.18983 -10.94350 -10.91125 -10.85467 -10.26161 -10.17666 -10.12079 -9.83830 -9.67542 -9.58340 -9.37597 -8.95778 -8.66280 -7.00713 -5.83168 -3.12542 0.79493 0.94333 1.80958 2.84596 3.29126 3.39164 3.45031 3.46406 3.47891 3.80859 4.04670 4.31636 4.52086 4.57464 4.70978 4.89860 4.91165 5.10554 5.14328 5.18515 5.19253 5.32781 5.36857 5.49368 5.49953 5.54048 5.60253 5.75621 5.82069 5.82319 5.87250 5.98953 5.99655 6.04055 6.20408 6.29582 6.46232 6.49983 6.66774 6.91318 7.64091 7.81217 7.81771 8.35020 8.48478 9.47175 10.02427 10.38087 11.39230 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003213 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.439021 B = 8711.629606 C =10886.512631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 N -0.349 5.349 4 O 0.108 5.892 5 C -0.004 4.004 6 Cl 0.047 6.953 7 C -0.161 4.161 8 C -0.028 4.028 9 C -0.139 4.139 10 C 0.517 3.483 11 O -0.544 6.544 12 N -0.708 5.708 13 C 0.168 3.832 14 H 0.091 0.909 15 C 0.148 3.852 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.187 4.187 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.992 4.922 -9.589 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.055 5.055 4 O 0.041 5.959 5 C -0.094 4.094 6 Cl 0.076 6.924 7 C -0.165 4.165 8 C -0.066 4.066 9 C -0.179 4.179 10 C 0.304 3.696 11 O -0.422 6.422 12 N -0.358 5.358 13 C 0.064 3.936 14 H 0.109 0.891 15 C 0.020 3.980 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.215 4.215 27 C -0.224 4.224 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.704 5.672 -10.169 19.550 hybrid contribution -0.401 -0.459 1.195 1.341 sum 15.303 5.213 -8.974 18.491 Atomic orbital electron populations 1.20298 0.84853 1.04826 1.03954 1.23424 0.99332 0.87721 1.01564 1.73953 0.88509 1.22994 1.20042 1.84911 1.22177 1.20703 1.68138 1.24590 0.90964 0.84972 1.08827 1.98457 1.28284 1.68953 1.96743 1.20936 0.89718 0.98502 1.07378 1.19704 1.04187 0.86293 0.96439 1.21636 1.04059 0.93908 0.98294 1.20399 0.76674 0.88518 0.83994 1.90621 1.51513 1.68820 1.31280 1.45995 1.69249 1.11916 1.08636 1.20739 0.93488 0.78992 1.00430 0.89119 1.20911 0.89870 0.94645 0.92620 1.42332 1.30919 1.38279 1.26071 1.19213 1.06355 1.13165 0.98616 0.91162 1.24728 0.99091 0.98371 0.98510 1.69657 1.31533 1.21520 1.35239 0.86199 0.80062 0.77493 0.82469 1.21724 1.21764 1.20757 1.22695 0.91848 1.00348 1.03093 1.22878 0.96842 1.00595 1.01157 1.23337 1.03393 1.03767 0.91868 0.89650 0.88983 0.90016 0.88744 0.89283 0.89013 0.88174 0.75970 0.94895 0.95638 0.78028 0.93504 0.87390 0.89055 0.89612 0.89860 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 36.00 0.37 -0.39 16 2 C 0.04 0.43 7.32 -82.13 -0.60 -0.17 16 3 N -0.35 -4.36 12.07 33.44 0.40 -3.96 16 4 O 0.11 1.26 11.20 17.12 0.19 1.46 16 5 C 0.00 -0.04 8.12 29.82 0.24 0.20 16 6 Cl 0.05 0.41 29.23 -51.86 -1.52 -1.11 16 7 C -0.16 -1.71 5.58 -104.38 -0.58 -2.29 16 8 C -0.03 -0.30 4.90 -27.88 -0.14 -0.43 16 9 C -0.14 -1.52 5.68 -27.89 -0.16 -1.68 16 10 C 0.52 7.24 6.67 -10.99 -0.07 7.16 16 11 O -0.54 -8.97 13.01 5.55 0.07 -8.90 16 12 N -0.71 -10.18 3.05 -53.80 -0.16 -10.35 16 13 C 0.17 2.67 2.59 -67.93 -0.18 2.49 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 15 C 0.15 2.75 5.80 -4.04 -0.02 2.73 16 16 N -0.73 -17.35 5.43 -59.91 -0.33 -17.67 16 17 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 21 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C -0.16 -2.16 5.71 -90.62 -0.52 -2.68 16 26 C -0.18 -2.14 9.74 -26.70 -0.26 -2.40 16 27 C -0.19 -2.43 9.82 -26.70 -0.26 -2.70 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.41 5.63 8.60 -40.82 -0.35 5.28 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 9.70 7.33 -40.82 -0.30 9.40 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.11 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.09 1.09 6.67 -51.92 -0.35 0.74 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.12 1.74 5.01 -51.92 -0.26 1.48 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -30.44 384.67 -8.53 -38.97 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.26 Total: 12.51 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.42 Total: -7.18 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.64 Total: -58.29 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.26 Total: -7.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.52 Total: -1.11 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.44 -8.53 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.899 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds