Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47437 * 89.97009 * 8 7 5 10 10 C 1.50692 * 109.47060 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00414 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00296 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47043 * 325.00360 * 13 12 10 15 15 C 1.53003 * 109.47455 * 205.00377 * 13 12 10 16 16 N 1.46495 * 109.47060 * 54.99752 * 15 13 12 17 17 C 1.36938 * 120.00091 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99975 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00165 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99709 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46831 * 90.00813 * 21 19 17 23 23 H 1.48498 * 109.46866 * 210.00505 * 21 19 17 24 24 H 1.48497 * 109.47080 * 330.00495 * 21 19 17 25 25 C 1.53001 * 109.47027 * 85.00027 * 13 12 10 26 26 C 1.53000 * 117.49927 * 8.75068 * 25 13 12 27 27 C 1.52994 * 117.50106 * 300.09100 * 25 13 12 28 28 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 29 29 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 30 30 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 31 31 H 1.08997 * 109.47168 * 209.97514 * 8 7 5 32 32 H 1.09003 * 109.47020 * 329.96899 * 8 7 5 33 33 H 1.08997 * 109.47353 * 300.00391 * 9 8 7 34 34 H 1.08998 * 109.46664 * 60.00100 * 9 8 7 35 35 H 0.97005 * 120.00055 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47226 * 174.99947 * 15 13 12 37 37 H 1.09005 * 109.46763 * 295.00052 * 15 13 12 38 38 H 0.97000 * 119.99936 * 0.02562 * 16 15 13 39 39 H 0.97000 * 119.99656 * 179.97438 * 20 19 17 40 40 H 1.09001 * 115.55062 * 154.41637 * 25 13 12 41 41 H 1.09007 * 117.49409 * 359.97438 * 26 25 13 42 42 H 1.08997 * 117.50191 * 145.01242 * 26 25 13 43 43 H 1.08998 * 117.50076 * 214.97632 * 27 25 13 44 44 H 1.09007 * 117.49824 * 359.97228 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8250 -3.0790 1.4418 10 6 1.4293 -4.5330 1.4410 11 8 1.2697 -5.1175 0.3903 12 7 1.2537 -5.1842 2.6078 13 6 0.8685 -6.5977 2.6071 14 1 0.2031 -6.7925 1.7660 15 6 0.1479 -6.9306 3.9151 16 7 -0.9829 -6.0170 4.0960 17 6 -1.7804 -6.1256 5.2038 18 1 -1.5755 -6.8844 5.9445 19 6 -2.8516 -5.2595 5.3755 20 7 -3.1010 -4.3344 4.4731 21 14 -3.9391 -5.4072 6.8871 22 1 -3.3954 -4.5530 7.9733 23 1 -5.3161 -4.9642 6.5514 24 1 -3.9703 -6.8216 7.3382 25 6 2.1206 -7.4675 2.4788 26 6 3.4787 -6.7710 2.5862 27 6 2.9850 -7.2817 1.2302 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.0035 -2.7027 -0.5138 32 1 2.7211 -3.1694 -0.5152 33 1 2.7794 -2.9620 1.9551 34 1 1.0618 -2.4953 1.9564 35 1 1.3818 -4.7169 3.4481 36 1 -0.2166 -7.9572 3.8780 37 1 0.8407 -6.8210 4.7496 38 1 -1.1671 -5.3357 3.4306 39 1 -3.8498 -3.7295 4.5929 40 1 2.0376 -8.4743 2.8882 41 1 3.4800 -5.6930 2.7477 42 1 4.2892 -7.3197 3.0659 43 1 3.4710 -8.1661 0.8184 44 1 2.6614 -6.5400 0.4998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670561602.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 35.812959 kcal Electronic energy + Delta-G solvation = -27498.599965 eV Core-core repulsion = 23480.807738 eV Total energy + Delta-G solvation = -4017.792228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.17348 -41.22641 -38.55931 -38.24497 -36.82435 -36.51498 -34.74010 -34.18616 -33.01406 -31.68308 -29.86085 -29.63121 -26.52588 -25.72311 -23.42813 -22.99236 -22.73388 -22.47632 -21.44723 -20.82568 -19.25356 -18.98616 -18.79783 -17.93577 -17.37174 -17.08406 -16.54141 -16.50423 -15.77459 -15.51837 -15.20234 -14.92127 -14.70747 -14.42747 -14.30285 -14.12278 -13.89562 -13.65239 -13.56719 -13.42628 -13.23951 -13.08850 -12.89572 -12.79939 -12.65659 -12.62868 -12.35751 -12.15096 -12.07406 -11.81925 -11.78486 -11.23821 -11.02987 -10.96457 -10.81643 -10.68557 -10.27366 -9.87020 -8.98035 -7.92466 -5.20968 -0.00274 0.09517 0.95021 1.50267 1.50890 1.59063 1.72520 2.27049 2.54209 2.57612 2.97185 3.01479 3.42186 3.47013 3.65300 3.73773 3.76867 4.01453 4.05019 4.14793 4.22593 4.25113 4.25858 4.46508 4.54110 4.55015 4.63512 4.68434 4.71504 4.75926 4.88436 4.93283 4.98658 5.04447 5.10863 5.19531 5.21546 5.31279 5.44879 5.53154 5.66415 6.28898 6.66088 6.96343 7.34987 7.36909 8.09991 8.34658 9.30361 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003213 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.439021 B = 8711.629606 C =10886.512631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.101 5.899 5 C 0.000 4.000 6 Cl 0.065 6.935 7 C -0.164 4.164 8 C -0.020 4.020 9 C -0.130 4.130 10 C 0.516 3.484 11 O -0.569 6.569 12 N -0.706 5.706 13 C 0.180 3.820 14 H 0.062 0.938 15 C 0.150 3.850 16 N -0.741 5.741 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.272 1.272 25 C -0.169 4.169 26 C -0.161 4.161 27 C -0.188 4.188 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.409 0.591 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.376 4.346 -8.850 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 N -0.078 5.078 4 O 0.035 5.965 5 C -0.090 4.090 6 Cl 0.094 6.906 7 C -0.169 4.169 8 C -0.058 4.058 9 C -0.170 4.170 10 C 0.304 3.696 11 O -0.450 6.450 12 N -0.357 5.357 13 C 0.075 3.925 14 H 0.080 0.920 15 C 0.023 3.977 16 N -0.384 5.384 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.798 3.202 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.197 1.197 25 C -0.189 4.189 26 C -0.198 4.198 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.134 5.068 -9.415 20.196 hybrid contribution -0.765 -0.351 0.926 1.252 sum 16.369 4.717 -8.488 19.033 Atomic orbital electron populations 1.20380 0.83821 1.04939 1.04866 1.23759 1.00133 0.87676 1.00832 1.73950 0.88893 1.23719 1.21274 1.84884 1.21994 1.21241 1.68342 1.24751 0.91699 0.84689 1.07838 1.98466 1.27174 1.68390 1.96588 1.20898 0.89781 0.98284 1.07912 1.19597 1.03921 0.86232 0.96055 1.21610 1.05040 0.91486 0.98887 1.20868 0.75912 0.89479 0.83295 1.90617 1.52603 1.69641 1.32117 1.45966 1.69195 1.11471 1.09066 1.20424 0.94099 0.80412 0.97587 0.92004 1.21017 0.88696 0.93500 0.94466 1.42480 1.31992 1.38851 1.25098 1.19595 1.06308 1.12515 0.99176 0.90608 1.25464 1.00785 0.98663 1.01254 1.69801 1.32085 1.22550 1.37055 0.85216 0.77802 0.77768 0.79397 1.21356 1.22576 1.19701 1.22607 0.91405 1.00581 1.04298 1.22962 0.96056 1.00822 0.99986 1.23285 1.03392 1.04018 0.91751 0.88334 0.89012 0.89703 0.89407 0.89119 0.86912 0.88062 0.75549 0.94923 0.94414 0.79178 0.94108 0.86317 0.88922 0.87630 0.88377 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.39 71.23 0.74 -0.75 16 2 C 0.03 0.75 7.32 43.54 0.32 1.07 16 3 N -0.37 -9.09 12.07 -49.42 -0.60 -9.69 16 4 O 0.10 2.30 11.20 71.44 0.80 3.10 16 5 C 0.00 0.00 8.12 67.23 0.55 0.55 16 6 Cl 0.07 1.03 29.23 -2.72 -0.08 0.95 16 7 C -0.16 -3.35 5.58 -19.71 -0.11 -3.46 16 8 C -0.02 -0.40 4.90 29.85 0.15 -0.26 16 9 C -0.13 -2.71 5.68 29.85 0.17 -2.54 16 10 C 0.52 14.18 6.67 87.65 0.58 14.76 16 11 O -0.57 -18.80 13.01 -3.04 -0.04 -18.84 16 12 N -0.71 -19.88 3.05 -442.53 -1.35 -21.23 16 13 C 0.18 5.63 2.59 44.99 0.12 5.74 16 14 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 15 C 0.15 5.48 5.80 86.38 0.50 5.98 16 16 N -0.74 -35.08 5.43 -343.45 -1.87 -36.94 16 17 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 20 N -0.96 -56.53 13.06 21.65 0.28 -56.25 16 21 Si 0.97 44.58 29.55 68.60 2.03 46.61 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C -0.17 -4.29 5.71 -10.80 -0.06 -4.35 16 26 C -0.16 -3.45 9.74 30.62 0.30 -3.16 16 27 C -0.19 -4.56 9.82 30.61 0.30 -4.26 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 32 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.41 10.96 8.60 -92.70 -0.80 10.16 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.38 19.12 7.33 -92.71 -0.68 18.44 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 41 H 0.09 1.97 6.67 -2.38 -0.02 1.95 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 2.85 5.01 -2.38 -0.01 2.84 16 Total: -1.00 -64.32 384.67 3.60 -60.72 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.43 Total: 37.68 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.86 Total: -6.09 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -3.53 Total: -124.11 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.76 Total: -15.75 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: 1.03 SS G_CDS: -0.08 Total: 0.95 kcal Total: -64.32 3.60 -60.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561602.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.528 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds