Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30206 * 126.79261 * 2 1 4 4 O 1.20920 * 111.64610 * 180.29156 * 3 2 1 5 5 C 1.34057 * 111.55483 * 359.69853 * 4 3 2 6 6 Cl 1.73602 * 126.80264 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40626 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 90.02294 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47650 * 35.00435 * 13 12 10 15 15 C 1.53002 * 109.46983 * 155.00136 * 13 12 10 16 16 N 1.46498 * 109.47384 * 305.00310 * 15 13 12 17 17 C 1.36936 * 120.00096 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99697 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47016 * 89.99920 * 21 19 17 23 23 H 1.48495 * 109.47075 * 210.00051 * 21 19 17 24 24 H 1.48494 * 109.46878 * 329.99893 * 21 19 17 25 25 C 1.52999 * 109.47357 * 275.00168 * 13 12 10 26 26 C 1.52998 * 117.49897 * 128.74986 * 25 13 12 27 27 C 1.53002 * 117.49620 * 60.09026 * 25 13 12 28 28 H 1.09007 * 109.46930 * 270.20164 * 1 2 3 29 29 H 1.09001 * 109.46764 * 30.19523 * 1 2 3 30 30 H 1.08995 * 109.47444 * 150.20042 * 1 2 3 31 31 H 1.09002 * 109.47120 * 330.02047 * 8 7 5 32 32 H 1.08998 * 109.46862 * 210.02849 * 8 7 5 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 35 35 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 36 36 H 1.08999 * 109.46598 * 65.00192 * 15 13 12 37 37 H 1.09001 * 109.47457 * 184.99624 * 15 13 12 38 38 H 0.97003 * 119.99635 * 359.97438 * 16 15 13 39 39 H 0.97008 * 119.99764 * 180.02562 * 20 19 17 40 40 H 1.08997 * 115.55089 * 274.42113 * 25 13 12 41 41 H 1.09000 * 117.49965 * 0.02562 * 26 25 13 42 42 H 1.09002 * 117.50071 * 145.02069 * 26 25 13 43 43 H 1.09007 * 117.49723 * 214.97712 * 27 25 13 44 44 H 1.08994 * 117.49854 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4540 0.7268 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4838 -0.0096 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5858 0.0089 9 6 1.8306 -3.0744 1.4531 10 6 1.4349 -4.5285 1.4584 11 8 1.2714 -5.1163 0.4102 12 7 1.2639 -5.1761 2.6281 13 6 0.8797 -6.5898 2.6332 14 1 1.3493 -7.0970 1.7903 15 6 1.3406 -7.2387 3.9399 16 7 2.7795 -7.0237 4.1111 17 6 3.4189 -7.5178 5.2166 18 1 2.8623 -8.0657 5.9625 19 6 4.7825 -7.3145 5.3784 20 7 5.4609 -6.6473 4.4691 21 14 5.6549 -7.9892 6.8862 22 1 6.1452 -9.3616 6.6016 23 1 6.8048 -7.1132 7.2260 24 1 4.7081 -8.0289 8.0295 25 6 -0.6413 -6.7055 2.5149 26 6 -1.1972 -7.6323 1.4320 27 6 -1.2999 -6.1139 1.2670 28 1 -0.3633 0.0036 1.0277 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3634 -0.8917 -0.5107 31 1 2.7193 -3.1710 -0.5069 32 1 1.0016 -2.7043 -0.5005 33 1 1.0694 -2.4892 1.9689 34 1 2.7871 -2.9559 1.9624 35 1 1.3950 -4.7061 3.4663 36 1 0.8042 -6.7911 4.7766 37 1 1.1344 -8.3085 3.9068 38 1 3.2794 -6.5313 3.4412 39 1 6.4139 -6.5056 4.5821 40 1 -1.1920 -6.6408 3.4533 41 1 -0.4794 -8.1599 0.8040 42 1 -2.1139 -8.1771 1.6578 43 1 -2.2841 -5.6604 1.3844 44 1 -0.6496 -5.6420 0.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670561603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = 48.991932 kcal Electronic energy + Delta-G solvation = -27323.159730 eV Core-core repulsion = 23305.938985 eV Total energy + Delta-G solvation = -4017.220744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.28560 -39.87035 -37.49600 -37.28229 -35.94317 -35.02362 -33.41464 -33.27346 -31.28045 -30.61094 -29.04632 -28.10902 -25.40166 -23.96145 -22.19987 -21.85505 -21.62009 -21.47068 -20.31227 -19.97532 -18.10527 -17.92587 -17.34105 -16.71345 -16.11917 -15.83614 -15.33523 -15.03438 -14.55668 -14.32240 -13.96131 -13.76481 -13.58847 -13.22014 -13.13879 -12.99277 -12.92592 -12.77709 -12.67328 -12.39340 -12.09440 -11.95390 -11.68508 -11.42028 -11.17763 -11.04659 -10.93826 -10.91689 -10.84161 -10.21933 -10.21431 -10.13841 -9.96136 -9.72703 -9.60653 -9.31898 -8.94655 -8.63314 -6.99808 -5.81820 -3.11525 0.90094 0.97138 1.79499 2.88508 3.29862 3.40155 3.44958 3.46368 3.47065 3.77273 4.11992 4.30663 4.52639 4.55370 4.74354 4.86707 4.91803 5.10872 5.13881 5.16764 5.19046 5.27081 5.32948 5.36515 5.47421 5.51636 5.57434 5.73120 5.77162 5.82935 5.87484 5.91299 6.01628 6.06718 6.20542 6.34572 6.47514 6.49552 6.66024 6.93047 7.64950 7.80931 7.85319 8.36044 8.52232 9.48176 10.03458 10.39063 11.40422 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.003398 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.101258 B = 8238.970972 C =10801.450159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 N -0.350 5.350 4 O 0.108 5.892 5 C 0.001 3.999 6 Cl 0.057 6.943 7 C -0.165 4.165 8 C -0.027 4.027 9 C -0.138 4.138 10 C 0.519 3.481 11 O -0.548 6.548 12 N -0.706 5.706 13 C 0.168 3.832 14 H 0.088 0.912 15 C 0.148 3.852 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.185 4.185 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.404 0.596 36 H 0.024 0.976 37 H 0.034 0.966 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 11.880 -9.802 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 N -0.057 5.057 4 O 0.041 5.959 5 C -0.089 4.089 6 Cl 0.086 6.914 7 C -0.170 4.170 8 C -0.065 4.065 9 C -0.178 4.178 10 C 0.306 3.694 11 O -0.427 6.427 12 N -0.356 5.356 13 C 0.064 3.936 14 H 0.106 0.894 15 C 0.020 3.980 16 N -0.376 5.376 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.182 4.182 26 C -0.209 4.209 27 C -0.222 4.222 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.239 0.761 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.365 12.609 -10.364 19.889 hybrid contribution 1.040 -0.847 1.201 1.800 sum -10.325 11.762 -9.164 18.136 Atomic orbital electron populations 1.20238 0.85207 1.04181 1.03879 1.23352 0.99139 0.87912 1.02166 1.73936 0.88607 1.23070 1.20060 1.84904 1.22045 1.20889 1.68080 1.24716 0.91550 0.84781 1.07846 1.98498 1.27816 1.68540 1.96569 1.20916 0.89776 0.98430 1.07856 1.19691 1.03973 0.86405 0.96460 1.21623 1.04390 0.93574 0.98211 1.20378 0.76382 0.88682 0.83944 1.90607 1.51701 1.68780 1.31589 1.45963 1.69094 1.11923 1.08593 1.20790 0.91035 0.81261 1.00553 0.89444 1.20914 0.87230 0.97436 0.92435 1.42337 1.02260 1.66980 1.26041 1.19205 0.91214 1.28402 0.98606 0.91160 1.24734 0.96498 1.00945 0.98504 1.69664 1.07667 1.45455 1.35074 0.86201 0.79313 0.78287 0.82428 1.21702 1.21771 1.20756 1.22648 0.95719 1.05873 0.93968 1.22893 1.02529 0.93183 1.02336 1.23263 1.01758 0.96125 1.01029 0.89676 0.90270 0.89459 0.89057 0.89132 0.88924 0.88303 0.76090 0.95805 0.94781 0.78012 0.93492 0.87991 0.88760 0.89289 0.89997 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16 2 C 0.03 0.34 7.32 -82.12 -0.60 -0.26 16 3 N -0.35 -4.26 12.07 33.43 0.40 -3.86 16 4 O 0.11 1.31 11.20 17.13 0.19 1.50 16 5 C 0.00 0.01 8.12 29.82 0.24 0.25 16 6 Cl 0.06 0.64 29.23 -51.86 -1.52 -0.88 16 7 C -0.16 -1.77 5.58 -104.38 -0.58 -2.36 16 8 C -0.03 -0.29 4.90 -27.89 -0.14 -0.43 16 9 C -0.14 -1.53 5.68 -27.88 -0.16 -1.69 16 10 C 0.52 7.39 7.16 -10.98 -0.08 7.32 16 11 O -0.55 -9.10 13.01 5.56 0.07 -9.03 16 12 N -0.71 -10.37 4.50 -53.80 -0.24 -10.62 16 13 C 0.17 2.70 2.43 -67.93 -0.17 2.53 16 14 H 0.09 1.61 7.34 -51.93 -0.38 1.23 16 15 C 0.15 2.79 5.80 -4.04 -0.02 2.77 16 16 N -0.73 -17.56 5.43 -59.91 -0.33 -17.89 16 17 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.16 -2.18 5.36 -90.62 -0.49 -2.67 16 26 C -0.17 -2.16 10.18 -26.69 -0.27 -2.43 16 27 C -0.18 -2.36 9.74 -26.69 -0.26 -2.62 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.51 7.65 -51.93 -0.40 0.12 16 31 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.09 0.89 7.61 -51.93 -0.39 0.50 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.69 8.60 -40.82 -0.35 5.34 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 9.85 7.33 -40.82 -0.30 9.55 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 41 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.12 1.71 5.02 -51.93 -0.26 1.45 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -30.94 386.61 -8.55 -39.49 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.27 Total: 12.03 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.39 Total: -6.86 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.56 Total: -58.96 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.26 Total: -7.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -1.52 Total: -0.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.94 -8.55 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.485 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds