Wall clock time and date at job start Sat Apr 11 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30206 * 126.79261 * 2 1 4 4 O 1.20920 * 111.64610 * 180.29156 * 3 2 1 5 5 C 1.34057 * 111.55483 * 359.69853 * 4 3 2 6 6 Cl 1.73602 * 126.80264 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40626 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 90.02294 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47650 * 35.00435 * 13 12 10 15 15 C 1.53002 * 109.46983 * 155.00136 * 13 12 10 16 16 N 1.46498 * 109.47384 * 305.00310 * 15 13 12 17 17 C 1.36936 * 120.00096 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99697 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47016 * 89.99920 * 21 19 17 23 23 H 1.48495 * 109.47075 * 210.00051 * 21 19 17 24 24 H 1.48494 * 109.46878 * 329.99893 * 21 19 17 25 25 C 1.52999 * 109.47357 * 275.00168 * 13 12 10 26 26 C 1.52998 * 117.49897 * 128.74986 * 25 13 12 27 27 C 1.53002 * 117.49620 * 60.09026 * 25 13 12 28 28 H 1.09007 * 109.46930 * 270.20164 * 1 2 3 29 29 H 1.09001 * 109.46764 * 30.19523 * 1 2 3 30 30 H 1.08995 * 109.47444 * 150.20042 * 1 2 3 31 31 H 1.09002 * 109.47120 * 330.02047 * 8 7 5 32 32 H 1.08998 * 109.46862 * 210.02849 * 8 7 5 33 33 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 35 35 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 36 36 H 1.08999 * 109.46598 * 65.00192 * 15 13 12 37 37 H 1.09001 * 109.47457 * 184.99624 * 15 13 12 38 38 H 0.97003 * 119.99635 * 359.97438 * 16 15 13 39 39 H 0.97008 * 119.99764 * 180.02562 * 20 19 17 40 40 H 1.08997 * 115.55089 * 274.42113 * 25 13 12 41 41 H 1.09000 * 117.49965 * 0.02562 * 26 25 13 42 42 H 1.09002 * 117.50071 * 145.02069 * 26 25 13 43 43 H 1.09007 * 117.49723 * 214.97712 * 27 25 13 44 44 H 1.08994 * 117.49854 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4540 0.7268 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4838 -0.0096 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5858 0.0089 9 6 1.8306 -3.0744 1.4531 10 6 1.4349 -4.5285 1.4584 11 8 1.2714 -5.1163 0.4102 12 7 1.2639 -5.1761 2.6281 13 6 0.8797 -6.5898 2.6332 14 1 1.3493 -7.0970 1.7903 15 6 1.3406 -7.2387 3.9399 16 7 2.7795 -7.0237 4.1111 17 6 3.4189 -7.5178 5.2166 18 1 2.8623 -8.0657 5.9625 19 6 4.7825 -7.3145 5.3784 20 7 5.4609 -6.6473 4.4691 21 14 5.6549 -7.9892 6.8862 22 1 6.1452 -9.3616 6.6016 23 1 6.8048 -7.1132 7.2260 24 1 4.7081 -8.0289 8.0295 25 6 -0.6413 -6.7055 2.5149 26 6 -1.1972 -7.6323 1.4320 27 6 -1.2999 -6.1139 1.2670 28 1 -0.3633 0.0036 1.0277 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3634 -0.8917 -0.5107 31 1 2.7193 -3.1710 -0.5069 32 1 1.0016 -2.7043 -0.5005 33 1 1.0694 -2.4892 1.9689 34 1 2.7871 -2.9559 1.9624 35 1 1.3950 -4.7061 3.4663 36 1 0.8042 -6.7911 4.7766 37 1 1.1344 -8.3085 3.9068 38 1 3.2794 -6.5313 3.4412 39 1 6.4139 -6.5056 4.5821 40 1 -1.1920 -6.6408 3.4533 41 1 -0.4794 -8.1599 0.8040 42 1 -2.1139 -8.1771 1.6578 43 1 -2.2841 -5.6604 1.3844 44 1 -0.6496 -5.6420 0.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670561603.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:42 Heat of formation + Delta-G solvation = 30.645144 kcal Electronic energy + Delta-G solvation = -27323.955306 eV Core-core repulsion = 23305.938985 eV Total energy + Delta-G solvation = -4018.016321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.14379 -41.04867 -38.56893 -38.25271 -36.81749 -36.58199 -34.90582 -34.16681 -32.98196 -31.67240 -29.78377 -29.54990 -26.53803 -25.66456 -23.30980 -23.02001 -22.68053 -22.44737 -21.42243 -21.15379 -19.24902 -18.95736 -18.78860 -17.92184 -17.27210 -16.90422 -16.65314 -16.32842 -15.92519 -15.50077 -15.19610 -15.00946 -14.66725 -14.49545 -14.25706 -14.05889 -13.80768 -13.70085 -13.62409 -13.47347 -13.19855 -13.15613 -12.84859 -12.78496 -12.65170 -12.43423 -12.31410 -12.11326 -12.05860 -11.83517 -11.80697 -11.20479 -11.05770 -11.01595 -10.96806 -10.68238 -10.26249 -9.84991 -8.99556 -7.93331 -5.22319 0.01664 0.08266 0.98038 1.49238 1.50170 1.58357 1.75236 2.23759 2.52343 2.57056 2.99844 3.09571 3.41244 3.47749 3.63078 3.73727 3.78320 4.00753 4.04745 4.17543 4.20525 4.25780 4.29608 4.42347 4.52156 4.58790 4.68429 4.69051 4.71310 4.79778 4.87500 4.94210 5.01869 5.05089 5.10675 5.16351 5.25534 5.34291 5.45570 5.51976 5.66900 6.27515 6.69076 6.94868 7.35454 7.37521 8.08699 8.32948 9.29411 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.003398 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.101258 B = 8238.970972 C =10801.450159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.041 3.959 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.005 4.005 6 Cl 0.055 6.945 7 C -0.164 4.164 8 C -0.020 4.020 9 C -0.129 4.129 10 C 0.517 3.483 11 O -0.573 6.573 12 N -0.706 5.706 13 C 0.180 3.820 14 H 0.057 0.943 15 C 0.149 3.851 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.070 4.070 20 N -0.965 5.965 21 Si 0.969 3.031 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.165 4.165 26 C -0.170 4.170 27 C -0.176 4.176 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 12.045 -9.000 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 N -0.081 5.081 4 O 0.029 5.971 5 C -0.095 4.095 6 Cl 0.083 6.917 7 C -0.169 4.169 8 C -0.058 4.058 9 C -0.169 4.169 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.356 5.356 13 C 0.074 3.926 14 H 0.076 0.924 15 C 0.023 3.977 16 N -0.385 5.385 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.219 1.219 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.185 4.185 26 C -0.208 4.208 27 C -0.213 4.213 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.244 0.756 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.207 0.793 39 H 0.058 0.942 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.656 12.765 -9.548 20.990 hybrid contribution 1.679 -0.941 0.910 2.129 sum -11.977 11.824 -8.638 18.917 Atomic orbital electron populations 1.20446 0.82728 1.05335 1.05178 1.23886 1.00558 0.87046 1.00291 1.73943 0.88753 1.23922 1.21441 1.84886 1.22358 1.21069 1.68743 1.24861 0.91797 0.84841 1.07988 1.98496 1.28093 1.68539 1.96585 1.20956 0.89618 0.98524 1.07823 1.19606 1.04102 0.86011 0.96070 1.21595 1.04809 0.91662 0.98819 1.20862 0.75607 0.89723 0.83252 1.90603 1.52741 1.69615 1.32384 1.45953 1.69217 1.11367 1.09065 1.20497 0.92806 0.81640 0.97619 0.92438 1.21037 0.84570 0.97691 0.94441 1.42497 1.04285 1.66655 1.25059 1.19605 0.91565 1.27266 0.99155 0.90485 1.25488 0.97422 1.02045 1.01297 1.69815 1.07450 1.47349 1.36979 0.85203 0.78064 0.77104 0.79747 1.21873 1.22383 1.19246 1.22541 0.93683 1.07117 0.95127 1.22971 1.02996 0.93368 1.01436 1.23225 1.02242 0.96131 0.99667 0.88152 0.89483 0.87963 0.90609 0.87882 0.86059 0.88973 0.75646 0.94282 0.94968 0.79269 0.94151 0.86388 0.90206 0.86970 0.87705 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.39 71.24 0.74 -0.17 16 2 C 0.04 0.79 7.32 43.55 0.32 1.11 16 3 N -0.37 -8.75 12.07 -49.44 -0.60 -9.35 16 4 O 0.09 2.25 11.20 71.48 0.80 3.05 16 5 C -0.01 -0.11 8.12 67.23 0.55 0.43 16 6 Cl 0.05 1.23 29.23 -2.72 -0.08 1.15 16 7 C -0.16 -3.37 5.58 -19.71 -0.11 -3.48 16 8 C -0.02 -0.40 4.90 29.85 0.15 -0.25 16 9 C -0.13 -2.71 5.68 29.85 0.17 -2.54 16 10 C 0.52 14.41 7.16 87.66 0.63 15.03 16 11 O -0.57 -18.98 13.01 -3.03 -0.04 -19.02 16 12 N -0.71 -20.26 4.50 -442.53 -1.99 -22.25 16 13 C 0.18 5.65 2.43 44.99 0.11 5.76 16 14 H 0.06 2.17 7.34 -2.38 -0.02 2.15 16 15 C 0.15 5.51 5.80 86.38 0.50 6.01 16 16 N -0.74 -35.61 5.43 -343.46 -1.87 -37.48 16 17 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.97 -57.48 13.06 21.65 0.28 -57.20 16 21 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.17 -4.11 5.36 -10.79 -0.06 -4.17 16 26 C -0.17 -3.96 10.18 30.62 0.31 -3.65 16 27 C -0.18 -4.08 9.74 30.62 0.30 -3.78 16 28 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.88 7.65 -2.39 -0.02 0.86 16 31 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.10 1.84 7.61 -2.39 -0.02 1.82 16 33 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 11.08 8.60 -92.71 -0.80 10.29 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.38 19.47 7.33 -92.71 -0.68 18.79 16 39 H 0.25 14.54 8.31 -92.70 -0.77 13.76 16 40 H 0.12 2.60 8.11 -2.39 -0.02 2.58 16 41 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 42 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.10 2.76 5.02 -2.39 -0.01 2.75 16 Total: -1.00 -66.42 386.61 3.02 -63.40 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.43 Total: 36.02 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.91 Total: -5.34 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -4.17 Total: -126.28 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.76 Total: -15.97 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: 1.23 SS G_CDS: -0.08 Total: 1.15 kcal Total: -66.42 3.02 -63.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561603.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.047 kcal (2) G-P(sol) polarization free energy of solvation -66.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds