Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38606 * 119.54890 * 2 1 4 4 C 1.38579 * 119.35011 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.49147 * 0.27796 * 4 3 2 6 6 C 1.39276 * 119.05935 * 359.43627 * 5 4 3 7 7 C 1.48164 * 119.72234 * 180.29121 * 6 5 4 8 8 O 1.21514 * 120.00190 * 0.28129 * 7 6 5 9 9 N 1.34784 * 119.99369 * 180.27546 * 7 6 5 10 10 N 1.40104 * 119.99153 * 180.02562 * 9 7 6 11 11 C 1.34784 * 119.99153 * 180.02562 * 10 9 7 12 12 O 1.21577 * 119.99161 * 180.02562 * 11 10 9 13 13 N 1.34776 * 120.00336 * 0.02562 * 11 10 9 14 14 C 1.39456 * 119.99775 * 174.95070 * 13 11 10 15 15 C 1.38645 * 119.64625 * 185.36303 * 14 13 11 16 16 C 1.40816 * 118.67304 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99822 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00399 * 151.74640 * 17 16 15 19 19 C 1.40032 * 120.00029 * 331.75017 * 17 16 15 20 20 N 1.30746 * 120.00022 * 350.19507 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 170.19073 * 19 17 16 22 22 H 1.48503 * 109.46572 * 90.00155 * 21 19 17 23 23 H 1.48495 * 109.47504 * 209.99975 * 21 19 17 24 24 H 1.48498 * 109.47090 * 330.00600 * 21 19 17 25 25 C 1.41162 * 118.00835 * 0.02562 * 16 15 14 26 26 C 1.36589 * 119.12701 * 359.97438 * 25 16 15 27 27 N 1.32073 * 121.25981 * 359.74595 * 26 25 16 28 28 N 1.31493 * 119.55078 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47487 * 89.99846 * 1 2 3 30 30 H 1.08996 * 109.47234 * 210.00302 * 1 2 3 31 31 H 1.09005 * 109.47131 * 329.99837 * 1 2 3 32 32 H 1.07998 * 120.32309 * 359.97438 * 3 2 1 33 33 H 1.08010 * 120.75845 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.47107 * 179.72190 * 5 4 3 35 35 H 0.96989 * 120.00162 * 0.02562 * 9 7 6 36 36 H 0.96994 * 120.00183 * 0.02562 * 10 9 7 37 37 H 0.96995 * 119.99932 * 354.95183 * 13 11 10 38 38 H 1.07997 * 120.66246 * 0.02562 * 15 14 13 39 39 H 0.96989 * 120.00235 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.43913 * 179.97438 * 25 16 15 41 41 H 1.08003 * 119.37136 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2334 -0.0197 -0.0048 6 6 3.4821 -1.1924 0.0014 7 6 4.1693 -2.5051 0.0023 8 8 5.3834 -2.5553 0.0028 9 7 3.4476 -3.6434 0.0027 10 7 4.0974 -4.8846 0.0041 11 6 3.3757 -6.0230 0.0040 12 8 3.9396 -7.1001 0.0057 13 7 2.0291 -5.9672 0.0020 14 6 1.2828 -7.1405 -0.1044 15 6 -0.0971 -7.0677 -0.2181 16 6 -0.8303 -8.2651 -0.3248 17 6 -2.2408 -8.2481 -0.4427 18 1 -2.7491 -9.0482 -0.9602 19 6 -2.9771 -7.1939 0.1117 20 7 -2.3907 -6.3297 0.8984 21 14 -4.7970 -7.0220 -0.2729 22 1 -5.5886 -7.7750 0.7330 23 1 -5.1787 -5.5875 -0.2302 24 1 -5.0704 -7.5670 -1.6269 25 6 -0.1168 -9.4830 -0.3097 26 6 1.2439 -9.4549 -0.1939 27 7 1.9004 -8.3127 -0.1012 28 7 2.1555 -1.1439 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6485 2.1399 -0.0004 33 1 4.1319 2.1272 0.0001 34 1 5.3126 -0.0607 -0.0091 35 1 2.4785 -3.6033 0.0021 36 1 5.0665 -4.9247 0.0052 37 1 1.5790 -5.1111 0.0746 38 1 -0.5994 -6.1117 -0.2255 39 1 -2.9006 -5.5993 1.2820 40 1 -0.6398 -10.4246 -0.3887 41 1 1.7938 -10.3844 -0.1815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673548524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 55.707553 kcal Electronic energy + Delta-G solvation = -28065.276249 eV Core-core repulsion = 23947.239222 eV Total energy + Delta-G solvation = -4118.037027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09429 -40.17744 -39.10498 -37.98489 -35.63942 -34.41681 -33.74436 -33.39656 -33.12731 -30.74766 -30.46799 -28.52427 -28.07898 -26.03089 -25.06494 -22.70723 -22.50239 -22.02552 -21.35740 -20.22727 -19.07162 -18.32295 -17.61644 -16.97533 -16.56760 -16.14959 -15.83015 -15.55939 -15.22919 -15.03649 -14.88850 -14.49957 -14.34290 -14.24380 -14.13937 -13.65226 -13.50967 -12.91369 -12.78180 -12.64313 -12.57447 -12.52939 -12.35326 -11.53058 -11.29765 -11.21141 -10.94388 -10.81066 -10.36921 -10.36702 -10.20523 -10.03359 -9.89498 -9.78048 -9.43075 -9.40903 -8.32828 -7.98975 -7.81053 -7.11501 -6.79758 -4.65502 0.24242 0.79360 1.79658 2.33718 2.62905 2.77101 2.99535 3.04244 3.19471 3.22668 3.44272 3.52810 3.66826 3.83800 4.17426 4.29913 4.55507 4.63587 4.66763 4.88155 5.04213 5.17831 5.22579 5.31759 5.59561 5.62626 5.66802 5.76360 5.82385 6.16966 6.33343 6.41080 6.48182 6.72280 6.84982 6.95799 7.08389 7.22482 7.32073 7.41297 7.43143 7.64270 7.84212 8.08182 8.28906 8.40362 8.67594 8.72752 8.90593 9.63327 10.07888 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.003283 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.897555 B = 8527.094359 C =11390.865499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.134 3.866 3 C -0.148 4.148 4 C -0.077 4.077 5 C -0.114 4.114 6 C 0.092 3.908 7 C 0.573 3.427 8 O -0.531 6.531 9 N -0.505 5.505 10 N -0.538 5.538 11 C 0.702 3.298 12 O -0.509 6.509 13 N -0.664 5.664 14 C 0.350 3.650 15 C -0.236 4.236 16 C 0.145 3.855 17 C -0.455 4.455 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.795 5.795 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.278 4.278 26 C 0.120 3.880 27 N -0.553 5.553 28 N -0.462 5.462 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.431 0.569 36 H 0.439 0.561 37 H 0.401 0.599 38 H 0.130 0.870 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 19.203 -0.995 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.006 4.006 3 C -0.168 4.168 4 C -0.103 4.103 5 C -0.135 4.135 6 C -0.047 4.047 7 C 0.357 3.643 8 O -0.406 6.406 9 N -0.255 5.255 10 N -0.298 5.298 11 C 0.401 3.599 12 O -0.375 6.375 13 N -0.314 5.314 14 C 0.124 3.876 15 C -0.262 4.262 16 C 0.137 3.863 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.421 5.421 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.302 4.302 26 C -0.034 4.034 27 N -0.272 5.272 28 N -0.174 5.174 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.274 0.726 36 H 0.285 0.715 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.239 17.646 -0.791 18.424 hybrid contribution -1.633 1.547 -0.037 2.250 sum 3.606 19.193 -0.828 19.546 Atomic orbital electron populations 1.20807 0.87846 1.04240 1.03751 1.21366 0.97386 0.87652 0.94245 1.22249 0.95046 0.99580 0.99906 1.21638 0.94433 0.98287 0.95916 1.22066 1.02366 0.91508 0.97589 1.20709 0.89760 0.92926 1.01336 1.17839 0.86608 0.82133 0.77713 1.90815 1.12518 1.86478 1.50788 1.44727 1.09272 0.97261 1.74242 1.45010 1.08788 0.93420 1.82632 1.15935 0.82322 0.82563 0.79066 1.91128 1.68792 1.23293 1.54270 1.42574 1.04150 1.09072 1.75579 1.17928 0.87418 0.84787 0.97459 1.21546 0.89609 1.00718 1.14348 1.17571 0.93391 0.89760 0.85607 1.19563 0.91018 1.06399 1.31693 0.90004 1.25931 1.01296 0.94241 0.92707 1.69742 1.38417 1.11907 1.22041 0.86221 0.81560 0.78272 0.80158 1.19414 1.20062 1.18441 1.21725 0.95038 0.98100 1.15363 1.21491 0.91483 0.94188 0.96238 1.67162 1.39556 0.96513 1.23957 1.67373 1.08275 1.30647 1.11140 0.89847 0.89625 0.90367 0.84023 0.83778 0.83185 0.72556 0.71527 0.76357 0.85205 0.90799 0.87846 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.13 1.15 6.78 -82.60 -0.56 0.59 16 3 C -0.15 -0.95 9.75 -39.32 -0.38 -1.34 16 4 C -0.08 -0.50 10.17 -39.31 -0.40 -0.90 16 5 C -0.11 -1.03 9.63 -39.05 -0.38 -1.40 16 6 C 0.09 1.04 6.75 -83.01 -0.56 0.48 16 7 C 0.57 7.70 7.93 -12.18 -0.10 7.60 16 8 O -0.53 -8.17 16.16 5.35 0.09 -8.09 16 9 N -0.50 -6.91 6.24 30.60 0.19 -6.72 16 10 N -0.54 -8.56 6.26 27.63 0.17 -8.39 16 11 C 0.70 13.96 8.63 -86.91 -0.75 13.20 16 12 O -0.51 -12.13 15.44 5.30 0.08 -12.05 16 13 N -0.66 -13.21 5.35 -15.86 -0.08 -13.29 16 14 C 0.35 8.43 7.42 -154.68 -1.15 7.29 16 15 C -0.24 -5.87 8.60 -38.46 -0.33 -6.20 16 16 C 0.15 3.74 5.58 -106.55 -0.59 3.15 16 17 C -0.46 -11.43 9.13 -37.65 -0.34 -11.77 16 18 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 19 C 0.08 1.79 5.30 -17.34 -0.09 1.70 16 20 N -0.79 -18.99 10.83 55.55 0.60 -18.39 16 21 Si 0.91 17.47 29.57 -169.99 -5.03 12.44 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 C -0.28 -6.73 9.85 -39.07 -0.38 -7.11 16 26 C 0.12 2.85 11.10 -18.04 -0.20 2.65 16 27 N -0.55 -14.10 7.86 -12.75 -0.10 -14.20 16 28 N -0.46 -5.04 9.45 -6.06 -0.06 -5.10 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.34 8.08 -51.93 -0.42 -0.07 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 35 H 0.43 5.47 6.04 -182.60 -1.10 4.36 16 36 H 0.44 6.72 8.10 -182.60 -1.48 5.24 16 37 H 0.40 6.67 6.63 -40.82 -0.27 6.40 16 38 H 0.13 3.17 6.27 -52.49 -0.33 2.84 16 39 H 0.28 6.06 8.29 -40.82 -0.34 5.73 16 40 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 41 H 0.12 2.58 8.06 -52.48 -0.42 2.15 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -32.75 362.71 -10.61 -43.36 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -6.09 Total: 17.36 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -5.85 Total: 7.60 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: 0.72 Total: -66.09 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.17 Total: -20.14 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.75 -10.61 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673548524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.064 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds