Wall clock time and date at job start Sat Apr 11 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38606 * 119.54890 * 2 1 4 4 C 1.38579 * 119.35011 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.49147 * 0.27796 * 4 3 2 6 6 C 1.39276 * 119.05935 * 359.43627 * 5 4 3 7 7 C 1.48164 * 119.72234 * 180.29121 * 6 5 4 8 8 O 1.21514 * 120.00190 * 0.28129 * 7 6 5 9 9 N 1.34784 * 119.99369 * 180.27546 * 7 6 5 10 10 N 1.40104 * 119.99153 * 180.02562 * 9 7 6 11 11 C 1.34784 * 119.99153 * 180.02562 * 10 9 7 12 12 O 1.21577 * 119.99161 * 180.02562 * 11 10 9 13 13 N 1.34776 * 120.00336 * 0.02562 * 11 10 9 14 14 C 1.39456 * 119.99775 * 174.95070 * 13 11 10 15 15 C 1.38645 * 119.64625 * 185.36303 * 14 13 11 16 16 C 1.40816 * 118.67304 * 179.97438 * 15 14 13 17 17 C 1.41545 * 120.99822 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00399 * 151.74640 * 17 16 15 19 19 C 1.40032 * 120.00029 * 331.75017 * 17 16 15 20 20 N 1.30746 * 120.00022 * 350.19507 * 19 17 16 21 21 Si 1.86801 * 120.00311 * 170.19073 * 19 17 16 22 22 H 1.48503 * 109.46572 * 90.00155 * 21 19 17 23 23 H 1.48495 * 109.47504 * 209.99975 * 21 19 17 24 24 H 1.48498 * 109.47090 * 330.00600 * 21 19 17 25 25 C 1.41162 * 118.00835 * 0.02562 * 16 15 14 26 26 C 1.36589 * 119.12701 * 359.97438 * 25 16 15 27 27 N 1.32073 * 121.25981 * 359.74595 * 26 25 16 28 28 N 1.31493 * 119.55078 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47487 * 89.99846 * 1 2 3 30 30 H 1.08996 * 109.47234 * 210.00302 * 1 2 3 31 31 H 1.09005 * 109.47131 * 329.99837 * 1 2 3 32 32 H 1.07998 * 120.32309 * 359.97438 * 3 2 1 33 33 H 1.08010 * 120.75845 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.47107 * 179.72190 * 5 4 3 35 35 H 0.96989 * 120.00162 * 0.02562 * 9 7 6 36 36 H 0.96994 * 120.00183 * 0.02562 * 10 9 7 37 37 H 0.96995 * 119.99932 * 354.95183 * 13 11 10 38 38 H 1.07997 * 120.66246 * 0.02562 * 15 14 13 39 39 H 0.96989 * 120.00235 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.43913 * 179.97438 * 25 16 15 41 41 H 1.08003 * 119.37136 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2334 -0.0197 -0.0048 6 6 3.4821 -1.1924 0.0014 7 6 4.1693 -2.5051 0.0023 8 8 5.3834 -2.5553 0.0028 9 7 3.4476 -3.6434 0.0027 10 7 4.0974 -4.8846 0.0041 11 6 3.3757 -6.0230 0.0040 12 8 3.9396 -7.1001 0.0057 13 7 2.0291 -5.9672 0.0020 14 6 1.2828 -7.1405 -0.1044 15 6 -0.0971 -7.0677 -0.2181 16 6 -0.8303 -8.2651 -0.3248 17 6 -2.2408 -8.2481 -0.4427 18 1 -2.7491 -9.0482 -0.9602 19 6 -2.9771 -7.1939 0.1117 20 7 -2.3907 -6.3297 0.8984 21 14 -4.7970 -7.0220 -0.2729 22 1 -5.5886 -7.7750 0.7330 23 1 -5.1787 -5.5875 -0.2302 24 1 -5.0704 -7.5670 -1.6269 25 6 -0.1168 -9.4830 -0.3097 26 6 1.2439 -9.4549 -0.1939 27 7 1.9004 -8.3127 -0.1012 28 7 2.1555 -1.1439 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6485 2.1399 -0.0004 33 1 4.1319 2.1272 0.0001 34 1 5.3126 -0.0607 -0.0091 35 1 2.4785 -3.6033 0.0021 36 1 5.0665 -4.9247 0.0052 37 1 1.5790 -5.1111 0.0746 38 1 -0.5994 -6.1117 -0.2255 39 1 -2.9006 -5.5993 1.2820 40 1 -0.6398 -10.4246 -0.3887 41 1 1.7938 -10.3844 -0.1815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673548524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:53 Heat of formation + Delta-G solvation = 33.747282 kcal Electronic energy + Delta-G solvation = -28066.228518 eV Core-core repulsion = 23947.239222 eV Total energy + Delta-G solvation = -4118.989296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12018 -41.47596 -40.34757 -39.65305 -36.99691 -36.19591 -35.50508 -34.02842 -33.87423 -32.45689 -31.86301 -30.28212 -28.69766 -27.91032 -25.88017 -24.20951 -23.85736 -23.28927 -22.37203 -21.89693 -20.48161 -19.62087 -19.18039 -18.21284 -17.44391 -17.18652 -17.09797 -16.93918 -16.75541 -16.31156 -16.12341 -16.04227 -15.99795 -15.39991 -15.20799 -14.81538 -14.70966 -14.43127 -14.29683 -14.04596 -13.32234 -13.20237 -13.10776 -12.90685 -12.85165 -12.70453 -12.64892 -12.19529 -11.90127 -11.88676 -11.66214 -11.54669 -11.18920 -10.96689 -10.65520 -10.09135 -9.90857 -9.69849 -9.63384 -8.92244 -8.58720 -6.55980 -0.47761 0.20241 0.55000 0.76501 1.00730 1.41336 1.44586 1.55575 1.59628 1.71941 2.01519 2.23644 2.68019 2.74318 2.84611 3.38107 3.68989 3.73928 3.84390 3.96260 4.07271 4.12241 4.41144 4.58770 4.65855 4.72184 4.77857 4.83938 4.90019 4.98290 5.04990 5.11840 5.18145 5.23745 5.24802 5.38935 5.48091 5.56954 5.62831 5.94057 6.02451 6.16946 6.35012 6.53680 6.73040 6.79219 6.84966 6.96034 7.30356 7.78441 8.32283 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.003283 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.897555 B = 8527.094359 C =11390.865499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.116 3.884 3 C -0.131 4.131 4 C -0.070 4.070 5 C -0.117 4.117 6 C 0.063 3.937 7 C 0.575 3.425 8 O -0.554 6.554 9 N -0.503 5.503 10 N -0.525 5.525 11 C 0.705 3.295 12 O -0.551 6.551 13 N -0.655 5.655 14 C 0.346 3.654 15 C -0.250 4.250 16 C 0.117 3.883 17 C -0.483 4.483 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.816 5.816 21 Si 0.988 3.012 22 H -0.265 1.265 23 H -0.262 1.262 24 H -0.260 1.260 25 C -0.290 4.290 26 C 0.113 3.887 27 N -0.579 5.579 28 N -0.486 5.486 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.435 0.565 36 H 0.444 0.556 37 H 0.414 0.586 38 H 0.128 0.872 39 H 0.292 0.708 40 H 0.119 0.881 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 22.236 -1.050 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.025 4.025 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.075 4.075 7 C 0.362 3.638 8 O -0.431 6.431 9 N -0.254 5.254 10 N -0.283 5.283 11 C 0.405 3.595 12 O -0.421 6.421 13 N -0.306 5.306 14 C 0.120 3.880 15 C -0.275 4.275 16 C 0.108 3.892 17 C -0.514 4.514 18 H 0.103 0.897 19 C -0.178 4.178 20 N -0.442 5.442 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.183 1.183 25 C -0.314 4.314 26 C -0.040 4.040 27 N -0.299 5.299 28 N -0.199 5.199 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.198 0.802 33 H 0.200 0.800 34 H 0.170 0.830 35 H 0.280 0.720 36 H 0.290 0.710 37 H 0.252 0.748 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.793 20.735 -0.840 21.096 hybrid contribution -1.176 0.767 0.010 1.404 sum 2.618 21.502 -0.830 21.677 Atomic orbital electron populations 1.20872 0.86698 1.04712 1.04216 1.21847 0.98343 0.87942 0.94374 1.22690 0.95208 1.00137 0.97038 1.22081 0.94727 0.98512 0.94202 1.22250 1.02576 0.91818 0.97174 1.20452 0.90363 0.92049 1.04649 1.18354 0.86460 0.82633 0.76376 1.90790 1.13553 1.86919 1.51814 1.44823 1.09459 0.96238 1.74927 1.44593 1.08709 0.93808 1.81211 1.15878 0.82084 0.82878 0.78706 1.91091 1.69550 1.25331 1.56102 1.42389 1.04233 1.08707 1.75261 1.18105 0.87698 0.85544 0.96683 1.21519 0.89910 1.00505 1.15617 1.18000 0.94329 0.90657 0.86189 1.19855 0.91164 1.07683 1.32666 0.89749 1.26784 1.05818 0.93285 0.91891 1.69776 1.40474 1.12129 1.21805 0.85108 0.75459 0.78813 0.79769 1.19016 1.18651 1.18331 1.21915 0.95340 0.98396 1.15728 1.21942 0.91760 0.94884 0.95372 1.67272 1.40233 0.97281 1.25097 1.67278 1.08175 1.32376 1.12105 0.89335 0.91397 0.87661 0.80226 0.80025 0.82992 0.72050 0.70960 0.74753 0.85414 0.89701 0.86321 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.17 71.24 0.72 -0.49 16 2 C 0.12 1.77 6.78 42.70 0.29 2.06 16 3 C -0.13 -1.20 9.75 22.44 0.22 -0.98 16 4 C -0.07 -0.66 10.17 22.44 0.23 -0.43 16 5 C -0.12 -1.93 9.63 22.61 0.22 -1.71 16 6 C 0.06 1.41 6.75 41.89 0.28 1.69 16 7 C 0.58 15.74 7.93 86.88 0.69 16.43 16 8 O -0.55 -17.36 16.16 -3.76 -0.06 -17.42 16 9 N -0.50 -14.11 6.24 -175.38 -1.10 -15.20 16 10 N -0.52 -17.16 6.26 -184.75 -1.16 -18.32 16 11 C 0.71 28.85 8.63 179.05 1.55 30.39 16 12 O -0.55 -27.09 15.44 -3.96 -0.06 -27.15 16 13 N -0.65 -26.79 5.35 -322.36 -1.72 -28.51 16 14 C 0.35 17.15 7.42 132.76 0.99 18.14 16 15 C -0.25 -12.72 8.60 23.00 0.20 -12.52 16 16 C 0.12 6.14 5.58 -21.12 -0.12 6.02 16 17 C -0.48 -24.45 9.13 23.52 0.21 -24.23 16 18 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 19 C 0.04 1.80 5.30 85.29 0.45 2.25 16 20 N -0.82 -38.84 10.83 21.84 0.24 -38.60 16 21 Si 0.99 34.88 29.57 68.60 2.03 36.91 16 22 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 24 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 25 C -0.29 -14.25 9.85 22.60 0.22 -14.02 16 26 C 0.11 5.49 11.10 84.27 0.94 6.42 16 27 N -0.58 -30.22 7.86 -194.26 -1.53 -31.74 16 28 N -0.49 -10.38 9.45 -173.08 -1.64 -12.02 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 0.58 8.08 -2.38 -0.02 0.56 16 32 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 33 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.15 2.36 7.64 -2.91 -0.02 2.34 16 35 H 0.44 11.38 6.04 -213.33 -1.29 10.09 16 36 H 0.44 13.99 8.10 -213.32 -1.73 12.27 16 37 H 0.41 14.19 6.63 -92.71 -0.62 13.58 16 38 H 0.13 6.41 6.27 -2.91 -0.02 6.40 16 39 H 0.29 12.37 8.29 -92.72 -0.77 11.60 16 40 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 41 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -72.62 362.71 -0.40 -73.03 By element: Atomic # 1 Polarization: 52.51 SS G_CDS: -2.50 Total: 50.01 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 7.09 Total: 29.01 kcal Atomic # 7 Polarization: -137.50 SS G_CDS: -6.90 Total: -144.40 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.12 Total: -44.57 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -72.62 -0.40 -73.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673548524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.776 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds