Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30216 * 126.78914 * 2 1 4 4 O 1.20920 * 111.64520 * 180.26049 * 3 2 1 5 5 C 1.34062 * 111.55382 * 359.73708 * 4 3 2 6 6 Cl 1.73602 * 126.79862 * 179.97438 * 5 4 3 7 7 C 1.35684 * 106.40397 * 359.97438 * 5 4 3 8 8 C 1.50706 * 128.01005 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46993 * 90.02376 * 8 7 5 10 10 O 1.21280 * 120.00336 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99712 * 179.97438 * 9 8 7 12 12 C 1.47427 * 125.64825 * 5.02016 * 11 9 8 13 13 C 1.54914 * 104.83164 * 204.16247 * 12 11 9 14 14 C 1.55160 * 101.57973 * 322.98813 * 13 12 11 15 15 C 1.47019 * 125.64679 * 185.05682 * 11 9 8 16 16 H 1.08994 * 109.88346 * 59.33736 * 15 11 9 17 17 C 1.52996 * 109.88411 * 298.32525 * 15 11 9 18 18 N 1.46499 * 109.47309 * 173.87730 * 17 15 11 19 19 C 1.46501 * 119.99940 * 275.47757 * 18 17 15 20 20 C 1.36943 * 120.00101 * 95.47619 * 18 17 15 21 21 H 1.07997 * 119.99730 * 335.66595 * 20 18 17 22 22 C 1.38807 * 120.00099 * 155.39315 * 20 18 17 23 23 N 1.31626 * 119.99755 * 352.89782 * 22 20 18 24 24 Si 1.86799 * 120.00067 * 172.89690 * 22 20 18 25 25 H 1.48491 * 109.47250 * 90.00048 * 24 22 20 26 26 H 1.48506 * 109.46812 * 210.00023 * 24 22 20 27 27 H 1.48503 * 109.46965 * 329.99485 * 24 22 20 28 28 H 1.08993 * 109.47042 * 270.17630 * 1 2 3 29 29 H 1.08994 * 109.47131 * 30.18201 * 1 2 3 30 30 H 1.09001 * 109.46760 * 150.17557 * 1 2 3 31 31 H 1.09004 * 109.47117 * 330.02209 * 8 7 5 32 32 H 1.08997 * 109.46683 * 210.02511 * 8 7 5 33 33 H 1.09003 * 110.36759 * 323.00010 * 12 11 9 34 34 H 1.09001 * 110.36818 * 85.20994 * 12 11 9 35 35 H 1.08997 * 111.00291 * 81.06100 * 13 12 11 36 36 H 1.09000 * 111.00256 * 204.88067 * 13 12 11 37 37 H 1.09001 * 110.72032 * 277.14412 * 14 13 12 38 38 H 1.08995 * 110.72073 * 153.86370 * 14 13 12 39 39 H 1.08998 * 109.47487 * 53.87580 * 17 15 11 40 40 H 1.09002 * 109.47429 * 293.87525 * 17 15 11 41 41 H 1.08997 * 109.46939 * 264.94808 * 19 18 17 42 42 H 1.08999 * 109.46982 * 24.94870 * 19 18 17 43 43 H 1.09004 * 109.46904 * 144.94927 * 19 18 17 44 44 H 0.97002 * 119.99366 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4541 0.7269 -0.0051 5 6 3.6037 -0.6053 -0.0036 6 17 5.1012 -1.4835 -0.0099 7 6 2.3531 -1.1314 0.0040 8 6 1.9581 -2.5858 0.0081 9 6 1.8336 -3.0684 1.4302 10 8 2.0453 -2.3067 2.3499 11 7 1.4870 -4.3467 1.6801 12 6 1.3039 -5.4012 0.6662 13 6 0.3519 -6.4278 1.3292 14 6 0.8402 -6.3995 2.8017 15 6 1.2282 -4.9202 3.0089 16 1 0.4109 -4.3842 3.4912 17 6 2.4897 -4.8288 3.8697 18 7 2.1829 -5.2668 5.2337 19 6 1.6149 -4.3201 6.1966 20 6 2.4272 -6.5611 5.6085 21 1 2.4621 -7.3416 4.8630 22 6 2.6355 -6.8688 6.9459 23 7 2.7376 -5.9036 7.8351 24 14 2.7708 -8.6525 7.4838 25 1 4.1908 -9.0822 7.4207 26 1 2.2739 -8.7885 8.8766 27 1 1.9551 -9.5048 6.5818 28 1 -0.3633 0.0032 1.0276 29 1 -0.3633 0.8883 -0.5166 30 1 -0.3633 -0.8916 -0.5111 31 1 2.7191 -3.1704 -0.5088 32 1 1.0014 -2.7038 -0.5008 33 1 0.8483 -4.9874 -0.2335 34 1 2.2597 -5.8672 0.4266 35 1 -0.6858 -6.1027 1.2554 36 1 0.4809 -7.4185 0.8933 37 1 1.7068 -7.0475 2.9332 38 1 0.0366 -6.6860 3.4801 39 1 2.8420 -3.7975 3.8899 40 1 3.2645 -5.4692 3.4482 41 1 2.4157 -3.8863 6.7953 42 1 1.0912 -3.5279 5.6616 43 1 0.9150 -4.8418 6.8494 44 1 2.8835 -6.1187 8.7696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674486850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = 53.910853 kcal Electronic energy + Delta-G solvation = -28230.433430 eV Core-core repulsion = 24213.425986 eV Total energy + Delta-G solvation = -4017.007444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.22188 -40.02031 -37.59166 -37.31279 -35.45183 -35.23660 -32.70494 -31.63752 -31.33431 -29.46042 -29.00524 -28.32295 -25.81634 -25.23310 -23.37525 -22.06810 -21.66617 -21.25844 -20.21745 -18.72608 -18.02658 -17.84499 -16.98711 -16.73502 -16.14119 -15.57525 -15.17450 -14.71081 -14.33409 -13.95295 -13.69628 -13.60702 -13.36188 -13.30428 -12.97958 -12.93637 -12.85897 -12.73427 -12.57971 -12.29777 -12.08566 -11.95133 -11.85535 -11.26680 -11.10591 -11.02385 -10.82036 -10.70965 -10.48292 -10.36190 -10.23041 -10.05292 -9.94769 -9.78007 -9.59047 -9.27908 -8.62217 -8.34794 -6.63314 -5.65947 -3.15016 0.86004 1.05513 1.85040 2.76039 3.13701 3.38766 3.41913 3.44611 3.46090 3.81165 4.29375 4.50216 4.53623 4.55701 4.69240 4.72331 5.01920 5.11361 5.14301 5.25136 5.30181 5.36682 5.42779 5.45798 5.50387 5.59870 5.68812 5.77731 5.82745 5.93262 6.02281 6.30800 6.33481 6.54277 6.64004 6.81668 6.94267 7.05313 7.49369 7.74078 7.81637 7.87684 7.89442 8.34186 8.47050 9.30273 9.93191 10.44643 11.38373 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003039 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.313208 B = 9211.766210 C = 9660.099153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 N -0.349 5.349 4 O 0.109 5.891 5 C 0.015 3.985 6 Cl 0.050 6.950 7 C -0.150 4.150 8 C -0.063 4.063 9 C 0.526 3.474 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.098 3.902 13 C -0.137 4.137 14 C -0.110 4.110 15 C 0.117 3.883 16 H 0.067 0.933 17 C 0.145 3.855 18 N -0.598 5.598 19 C 0.167 3.833 20 C -0.252 4.252 21 H 0.068 0.932 22 C 0.002 3.998 23 N -0.908 5.908 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.029 0.971 42 H -0.004 1.004 43 H 0.041 0.959 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 5.568 -22.173 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.075 4.075 6 Cl 0.079 6.921 7 C -0.155 4.155 8 C -0.103 4.103 9 C 0.313 3.687 10 O -0.398 6.398 11 N -0.347 5.347 12 C -0.025 4.025 13 C -0.175 4.175 14 C -0.148 4.148 15 C 0.012 3.988 16 H 0.086 0.914 17 C 0.017 3.983 18 N -0.321 5.321 19 C 0.022 3.978 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.196 4.196 23 N -0.553 5.553 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.014 0.986 43 H 0.060 0.940 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.796 7.302 -21.458 22.982 hybrid contribution 0.324 -1.922 0.437 1.997 sum -3.472 5.380 -21.021 21.974 Atomic orbital electron populations 1.20222 0.85292 1.03759 1.04152 1.23220 0.99045 0.87734 1.01426 1.73911 0.88483 1.22858 1.20290 1.84897 1.22131 1.20559 1.68097 1.24489 0.90940 0.84938 1.07144 1.98464 1.28153 1.68893 1.96616 1.20095 0.90111 0.96814 1.08448 1.19968 1.04519 0.89505 0.96330 1.19839 0.77596 0.80851 0.90434 1.90765 1.48795 1.54135 1.46094 1.48661 1.68446 1.08415 1.09171 1.22341 0.99602 0.89092 0.91492 1.22822 0.98836 0.98669 0.97188 1.22584 1.02231 0.95596 0.94421 1.22629 1.01244 0.93070 0.81866 0.91444 1.21025 0.92600 0.98761 0.85942 1.43805 1.72751 1.09072 1.06444 1.20771 0.96251 0.90070 0.90715 1.19195 1.42860 0.84120 0.92041 0.91404 1.25106 1.00390 0.97179 0.96974 1.70077 1.53871 1.29836 1.01544 0.86293 0.77766 0.84838 0.77820 1.21520 1.21701 1.20578 0.89435 0.90170 0.89902 0.87468 0.87229 0.91188 0.91300 0.91103 0.90246 0.90131 0.90124 0.93268 0.93605 0.95277 0.98582 0.94000 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.30 16 2 C 0.04 0.54 7.32 -82.12 -0.60 -0.06 16 3 N -0.35 -4.78 12.07 33.44 0.40 -4.38 16 4 O 0.11 1.47 11.20 17.12 0.19 1.66 16 5 C 0.02 0.19 8.12 29.82 0.24 0.43 16 6 Cl 0.05 0.55 29.23 -51.86 -1.52 -0.96 16 7 C -0.15 -1.80 4.82 -104.38 -0.50 -2.30 16 8 C -0.06 -0.63 5.03 -29.03 -0.15 -0.78 16 9 C 0.53 7.69 7.66 -10.99 -0.08 7.61 16 10 O -0.52 -10.13 14.82 5.56 0.08 -10.05 16 11 N -0.61 -8.58 3.06 -163.01 -0.50 -9.08 16 12 C 0.10 0.96 6.74 -2.53 -0.02 0.95 16 13 C -0.14 -1.42 7.09 -24.58 -0.17 -1.60 16 14 C -0.11 -1.67 5.75 -24.89 -0.14 -1.82 16 15 C 0.12 2.04 3.14 -66.95 -0.21 1.83 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C 0.15 3.16 5.11 -4.04 -0.02 3.14 16 18 N -0.60 -15.30 2.83 -181.12 -0.51 -15.82 16 19 C 0.17 4.35 8.98 59.85 0.54 4.89 16 20 C -0.25 -6.81 9.07 -15.06 -0.14 -6.94 16 21 H 0.07 1.74 6.68 -52.49 -0.35 1.39 16 22 C 0.00 0.05 5.21 -17.43 -0.09 -0.05 16 23 N -0.91 -26.92 10.50 55.49 0.58 -26.33 16 24 Si 0.90 21.67 29.56 -169.99 -5.02 16.65 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 0.77 7.46 -51.93 -0.39 0.38 16 33 H 0.07 0.48 7.47 -51.93 -0.39 0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.33 6.65 -51.93 -0.35 0.99 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.17 6.50 -51.93 -0.34 0.83 16 40 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 41 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 42 H 0.00 -0.11 8.03 -51.93 -0.42 -0.52 16 43 H 0.04 1.14 7.28 -51.93 -0.38 0.76 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -33.51 375.37 -7.92 -41.42 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -6.31 Total: -3.78 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.97 Total: 5.01 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.03 Total: -55.61 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.27 Total: -8.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.52 Total: -0.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.51 -7.92 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674486850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.335 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds