Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30216 * 126.78914 * 2 1 4 4 O 1.20920 * 111.64520 * 180.26049 * 3 2 1 5 5 C 1.34062 * 111.55382 * 359.73708 * 4 3 2 6 6 Cl 1.73602 * 126.79862 * 179.97438 * 5 4 3 7 7 C 1.35684 * 106.40397 * 359.97438 * 5 4 3 8 8 C 1.50706 * 128.01005 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46993 * 90.02376 * 8 7 5 10 10 O 1.21280 * 120.00336 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99712 * 179.97438 * 9 8 7 12 12 C 1.47427 * 125.64825 * 5.02016 * 11 9 8 13 13 C 1.54914 * 104.83164 * 204.16247 * 12 11 9 14 14 C 1.55160 * 101.57973 * 322.98813 * 13 12 11 15 15 C 1.47019 * 125.64679 * 185.05682 * 11 9 8 16 16 H 1.08994 * 109.88346 * 59.33736 * 15 11 9 17 17 C 1.52996 * 109.88411 * 298.32525 * 15 11 9 18 18 N 1.46499 * 109.47309 * 173.87730 * 17 15 11 19 19 C 1.46501 * 119.99940 * 275.47757 * 18 17 15 20 20 C 1.36943 * 120.00101 * 95.47619 * 18 17 15 21 21 H 1.07997 * 119.99730 * 335.66595 * 20 18 17 22 22 C 1.38807 * 120.00099 * 155.39315 * 20 18 17 23 23 N 1.31626 * 119.99755 * 352.89782 * 22 20 18 24 24 Si 1.86799 * 120.00067 * 172.89690 * 22 20 18 25 25 H 1.48491 * 109.47250 * 90.00048 * 24 22 20 26 26 H 1.48506 * 109.46812 * 210.00023 * 24 22 20 27 27 H 1.48503 * 109.46965 * 329.99485 * 24 22 20 28 28 H 1.08993 * 109.47042 * 270.17630 * 1 2 3 29 29 H 1.08994 * 109.47131 * 30.18201 * 1 2 3 30 30 H 1.09001 * 109.46760 * 150.17557 * 1 2 3 31 31 H 1.09004 * 109.47117 * 330.02209 * 8 7 5 32 32 H 1.08997 * 109.46683 * 210.02511 * 8 7 5 33 33 H 1.09003 * 110.36759 * 323.00010 * 12 11 9 34 34 H 1.09001 * 110.36818 * 85.20994 * 12 11 9 35 35 H 1.08997 * 111.00291 * 81.06100 * 13 12 11 36 36 H 1.09000 * 111.00256 * 204.88067 * 13 12 11 37 37 H 1.09001 * 110.72032 * 277.14412 * 14 13 12 38 38 H 1.08995 * 110.72073 * 153.86370 * 14 13 12 39 39 H 1.08998 * 109.47487 * 53.87580 * 17 15 11 40 40 H 1.09002 * 109.47429 * 293.87525 * 17 15 11 41 41 H 1.08997 * 109.46939 * 264.94808 * 19 18 17 42 42 H 1.08999 * 109.46982 * 24.94870 * 19 18 17 43 43 H 1.09004 * 109.46904 * 144.94927 * 19 18 17 44 44 H 0.97002 * 119.99366 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4541 0.7269 -0.0051 5 6 3.6037 -0.6053 -0.0036 6 17 5.1012 -1.4835 -0.0099 7 6 2.3531 -1.1314 0.0040 8 6 1.9581 -2.5858 0.0081 9 6 1.8336 -3.0684 1.4302 10 8 2.0453 -2.3067 2.3499 11 7 1.4870 -4.3467 1.6801 12 6 1.3039 -5.4012 0.6662 13 6 0.3519 -6.4278 1.3292 14 6 0.8402 -6.3995 2.8017 15 6 1.2282 -4.9202 3.0089 16 1 0.4109 -4.3842 3.4912 17 6 2.4897 -4.8288 3.8697 18 7 2.1829 -5.2668 5.2337 19 6 1.6149 -4.3201 6.1966 20 6 2.4272 -6.5611 5.6085 21 1 2.4621 -7.3416 4.8630 22 6 2.6355 -6.8688 6.9459 23 7 2.7376 -5.9036 7.8351 24 14 2.7708 -8.6525 7.4838 25 1 4.1908 -9.0822 7.4207 26 1 2.2739 -8.7885 8.8766 27 1 1.9551 -9.5048 6.5818 28 1 -0.3633 0.0032 1.0276 29 1 -0.3633 0.8883 -0.5166 30 1 -0.3633 -0.8916 -0.5111 31 1 2.7191 -3.1704 -0.5088 32 1 1.0014 -2.7038 -0.5008 33 1 0.8483 -4.9874 -0.2335 34 1 2.2597 -5.8672 0.4266 35 1 -0.6858 -6.1027 1.2554 36 1 0.4809 -7.4185 0.8933 37 1 1.7068 -7.0475 2.9332 38 1 0.0366 -6.6860 3.4801 39 1 2.8420 -3.7975 3.8899 40 1 3.2645 -5.4692 3.4482 41 1 2.4157 -3.8863 6.7953 42 1 1.0912 -3.5279 5.6616 43 1 0.9150 -4.8418 6.8494 44 1 2.8835 -6.1187 8.7696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674486850.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 33.223531 kcal Electronic energy + Delta-G solvation = -28231.330499 eV Core-core repulsion = 24213.425986 eV Total energy + Delta-G solvation = -4017.904514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.15109 -41.18769 -38.79046 -38.26953 -37.09237 -36.37773 -33.78373 -33.33097 -32.52031 -30.79711 -29.91624 -29.30742 -27.95373 -26.76748 -24.59638 -23.17424 -22.79009 -22.56199 -21.52384 -19.89900 -18.99563 -18.83370 -18.75084 -17.99648 -17.36575 -16.75686 -16.45079 -16.22316 -15.54697 -15.37857 -15.06856 -14.91391 -14.55381 -14.33167 -14.26803 -14.00204 -13.83341 -13.68162 -13.61327 -13.48115 -13.40954 -13.14826 -12.92909 -12.81476 -12.72708 -12.57321 -12.35658 -12.05991 -11.98101 -11.91501 -11.88726 -11.55839 -11.46504 -11.14955 -10.80299 -10.65420 -10.28377 -9.66961 -8.70551 -7.79267 -5.31766 -0.06471 0.12582 0.94665 1.47926 1.49307 1.58508 1.67208 2.07625 2.49089 2.54305 2.98551 3.35346 3.45638 3.55159 3.70500 3.74102 3.84563 3.87876 4.08324 4.12726 4.38836 4.40244 4.52222 4.55559 4.57365 4.60531 4.66520 4.76110 4.78477 4.81847 4.96387 5.03296 5.14313 5.15015 5.19543 5.24117 5.29927 5.47565 5.55749 5.63591 5.69883 6.33928 6.66820 6.94588 7.15204 7.24208 7.85178 8.34871 9.25058 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003039 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.313208 B = 9211.766210 C = 9660.099153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.042 3.958 3 N -0.375 5.375 4 O 0.092 5.908 5 C 0.004 3.996 6 Cl 0.059 6.941 7 C -0.156 4.156 8 C -0.052 4.052 9 C 0.521 3.479 10 O -0.581 6.581 11 N -0.611 5.611 12 C 0.093 3.907 13 C -0.122 4.122 14 C -0.110 4.110 15 C 0.129 3.871 16 H 0.041 0.959 17 C 0.151 3.849 18 N -0.613 5.613 19 C 0.188 3.812 20 C -0.252 4.252 21 H 0.083 0.917 22 C -0.060 4.060 23 N -0.948 5.948 24 Si 0.973 3.027 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.260 1.260 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.043 0.957 41 H -0.003 1.003 42 H 0.009 0.991 43 H 0.023 0.977 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 3.377 -25.726 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 N -0.085 5.085 4 O 0.029 5.971 5 C -0.086 4.086 6 Cl 0.087 6.913 7 C -0.161 4.161 8 C -0.092 4.092 9 C 0.310 3.690 10 O -0.461 6.461 11 N -0.345 5.345 12 C -0.028 4.028 13 C -0.160 4.160 14 C -0.148 4.148 15 C 0.023 3.977 16 H 0.059 0.941 17 C 0.024 3.976 18 N -0.336 5.336 19 C 0.042 3.958 20 C -0.382 4.382 21 H 0.101 0.899 22 C -0.254 4.254 23 N -0.595 5.595 24 Si 0.800 3.200 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.185 1.185 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.027 0.973 43 H 0.042 0.958 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.043 5.078 -25.102 26.103 hybrid contribution 0.752 -1.187 1.517 2.068 sum -4.290 3.891 -23.586 24.287 Atomic orbital electron populations 1.20407 0.83022 1.05972 1.04118 1.23846 1.00529 0.87385 0.99902 1.73905 0.88793 1.23998 1.21783 1.84857 1.22323 1.21204 1.68755 1.24803 0.91787 0.84873 1.07118 1.98461 1.27720 1.68519 1.96569 1.20432 0.89740 0.97891 1.08016 1.20083 1.07698 0.88154 0.93224 1.20691 0.76090 0.80347 0.91829 1.90753 1.51265 1.55724 1.48314 1.48708 1.67886 1.09259 1.08623 1.22717 1.00666 0.87816 0.91633 1.22822 0.99510 1.00556 0.93065 1.22464 1.01256 0.92991 0.98121 1.22066 0.97448 0.94945 0.83266 0.94118 1.21049 0.94851 0.96768 0.84905 1.44008 1.72999 1.08797 1.07844 1.20404 0.94737 0.90171 0.90459 1.19622 1.41280 0.84921 0.92405 0.89912 1.25978 1.00812 1.01414 0.97210 1.70281 1.55726 1.32031 1.01469 0.85186 0.77734 0.79988 0.77046 1.21383 1.22488 1.18461 0.90375 0.88964 0.86798 0.84765 0.82885 0.86495 0.90007 0.89837 0.87515 0.91582 0.91714 0.95963 0.93822 0.98494 0.97255 0.95841 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.39 71.24 0.74 -0.44 16 2 C 0.04 0.97 7.32 43.55 0.32 1.29 16 3 N -0.37 -10.25 12.07 -49.43 -0.60 -10.85 16 4 O 0.09 2.49 11.20 71.43 0.80 3.29 16 5 C 0.00 0.11 8.12 67.23 0.55 0.65 16 6 Cl 0.06 1.25 29.23 -2.72 -0.08 1.17 16 7 C -0.16 -3.45 4.82 -19.71 -0.10 -3.55 16 8 C -0.05 -0.85 5.03 29.10 0.15 -0.70 16 9 C 0.52 14.22 7.66 87.66 0.67 14.89 16 10 O -0.58 -22.75 14.82 -3.03 -0.04 -22.80 16 11 N -0.61 -15.58 3.06 -788.04 -2.41 -17.99 16 12 C 0.09 1.34 6.74 86.86 0.59 1.92 16 13 C -0.12 -1.96 7.09 31.99 0.23 -1.74 16 14 C -0.11 -3.14 5.75 31.79 0.18 -2.96 16 15 C 0.13 4.43 3.14 45.34 0.14 4.58 16 16 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 17 C 0.15 6.73 5.11 86.38 0.44 7.18 16 18 N -0.61 -32.32 2.83 -726.95 -2.06 -34.37 16 19 C 0.19 10.31 8.98 127.77 1.15 11.45 16 20 C -0.25 -13.74 9.07 84.03 0.76 -12.98 16 21 H 0.08 4.18 6.68 -2.91 -0.02 4.16 16 22 C -0.06 -3.40 5.21 84.86 0.44 -2.96 16 23 N -0.95 -58.15 10.50 21.65 0.23 -57.92 16 24 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 25 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.97 7.65 -2.39 -0.02 0.95 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.15 1.18 7.46 -2.39 -0.02 1.16 16 33 H 0.12 0.71 7.47 -2.39 -0.02 0.69 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 2.07 6.65 -2.39 -0.02 2.06 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.02 1.10 6.50 -2.39 -0.02 1.08 16 40 H 0.04 1.92 7.85 -2.39 -0.02 1.90 16 41 H 0.00 -0.20 7.34 -2.39 -0.02 -0.22 16 42 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 43 H 0.02 1.33 7.28 -2.39 -0.02 1.31 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -78.68 375.37 5.14 -73.54 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.02 Total: 2.42 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 6.26 Total: 16.64 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -4.84 Total: -121.13 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.75 Total: -19.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -0.08 Total: 1.17 kcal Total: -78.68 5.14 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674486850.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.763 kcal (2) G-P(sol) polarization free energy of solvation -78.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds