Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30211 * 126.78698 * 2 1 4 4 O 1.20925 * 111.64552 * 180.02562 * 3 2 1 5 5 C 1.34063 * 111.55007 * 359.77109 * 4 3 2 6 6 Cl 1.73600 * 126.79638 * 180.25333 * 5 4 3 7 7 C 1.35668 * 106.40788 * 0.37556 * 5 4 3 8 8 C 1.50706 * 128.01602 * 179.91408 * 7 5 4 9 9 C 1.53000 * 109.47116 * 269.67727 * 8 7 5 10 10 C 1.50696 * 109.47110 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00042 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.46493 * 119.99962 * 0.02562 * 12 10 9 14 14 C 1.46496 * 119.99741 * 179.97438 * 12 10 9 15 15 H 1.09005 * 110.89052 * 356.12513 * 14 12 10 16 16 C 1.55160 * 111.00102 * 120.00405 * 14 12 10 17 17 C 1.54324 * 102.94391 * 153.57793 * 16 14 12 18 18 N 1.47019 * 107.26752 * 337.80450 * 17 16 14 19 19 C 1.36941 * 125.64616 * 178.99038 * 18 17 16 20 20 H 1.08004 * 119.99969 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00238 * 359.97170 * 19 18 17 22 22 N 1.31619 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47490 * 120.00266 * 23 21 19 26 26 H 1.48502 * 109.47012 * 240.00010 * 23 21 19 27 27 C 1.47423 * 108.70529 * 358.94065 * 18 17 16 28 28 H 1.09004 * 109.46938 * 269.96514 * 1 2 3 29 29 H 1.08993 * 109.47038 * 29.96774 * 1 2 3 30 30 H 1.09004 * 109.46890 * 149.96889 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.67141 * 8 7 5 32 32 H 1.09000 * 109.47248 * 149.67858 * 8 7 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 34 34 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 35 35 H 1.09003 * 109.47205 * 89.99932 * 13 12 10 36 36 H 1.09000 * 109.47085 * 209.99906 * 13 12 10 37 37 H 1.08999 * 109.47554 * 329.99880 * 13 12 10 38 38 H 1.09010 * 110.71919 * 271.93592 * 16 14 12 39 39 H 1.08996 * 110.72623 * 35.20942 * 16 14 12 40 40 H 1.08999 * 109.88509 * 97.22335 * 17 16 14 41 41 H 1.08997 * 109.87906 * 218.38915 * 17 16 14 42 42 H 0.96998 * 120.00416 * 180.02562 * 22 21 19 43 43 H 1.08989 * 110.36837 * 265.28924 * 27 18 17 44 44 H 1.09003 * 110.36736 * 142.96526 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6037 -0.6053 0.0041 6 17 5.1012 -1.4834 0.0113 7 6 2.3532 -1.1314 -0.0008 8 6 1.9581 -2.5858 -0.0005 9 6 1.8231 -3.0779 -1.4428 10 6 1.4286 -4.5323 -1.4425 11 8 1.2705 -5.1175 -0.3920 12 7 1.2505 -5.1825 -2.6096 13 6 1.4409 -4.4755 -3.8784 14 6 0.8676 -6.5966 -2.6092 15 1 0.8341 -6.9899 -1.5932 16 6 -0.4898 -6.8053 -3.3313 17 6 -0.3949 -8.2622 -3.8313 18 7 1.0324 -8.6070 -3.9027 19 6 1.5425 -9.8194 -4.2837 20 1 2.6113 -9.9735 -4.3036 21 6 0.6859 -10.8505 -4.6442 22 7 -0.6166 -10.6626 -4.6203 23 14 1.3816 -12.5045 -5.1631 24 1 2.8648 -12.4577 -5.1060 25 1 0.8835 -13.5609 -4.2460 26 1 0.9496 -12.8099 -6.5508 27 6 1.8238 -7.4310 -3.4975 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 2.7223 -3.1696 0.5126 32 1 1.0044 -2.7031 0.5142 33 1 1.0590 -2.4939 -1.9560 34 1 2.7768 -2.9605 -1.9576 35 1 2.4799 -4.5695 -4.1944 36 1 0.7897 -4.9092 -4.6373 37 1 1.1949 -3.4217 -3.7477 38 1 -1.3195 -6.6903 -2.6336 39 1 -0.5910 -6.1157 -4.1694 40 1 -0.9026 -8.9276 -3.1331 41 1 -0.8462 -8.3448 -4.8201 42 1 -1.2153 -11.3832 -4.8719 43 1 2.1258 -6.8569 -4.3733 44 1 2.6986 -7.7411 -2.9259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714029918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = 30.947891 kcal Electronic energy + Delta-G solvation = -27232.252248 eV Core-core repulsion = 23214.249056 eV Total energy + Delta-G solvation = -4018.003193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -46.14211 -41.15926 -39.05336 -38.27030 -36.87862 -36.22815 -34.34483 -33.90412 -31.81057 -30.98909 -29.71762 -29.18886 -27.77074 -26.84769 -25.76720 -22.79788 -22.47652 -22.04913 -21.60490 -19.93394 -18.97098 -18.93491 -18.80218 -18.20071 -17.17964 -16.94908 -16.66709 -16.22462 -15.88831 -15.34452 -15.09922 -14.49684 -14.32648 -14.26212 -14.12946 -14.04236 -13.91031 -13.68961 -13.61733 -13.56048 -13.49439 -13.32481 -12.97164 -12.90155 -12.80636 -12.76369 -12.35022 -12.18872 -12.05900 -11.98603 -11.81144 -11.77936 -11.47296 -11.01209 -10.80016 -10.73520 -10.27011 -9.60811 -8.91227 -7.86377 -5.22905 0.02195 0.10544 0.98126 1.46140 1.47336 1.57572 1.65531 1.98230 2.49607 2.53476 3.00326 3.32533 3.44330 3.57542 3.69078 3.75330 3.92520 3.97833 4.02705 4.18143 4.21910 4.28997 4.35078 4.52114 4.59039 4.66059 4.69426 4.70248 4.74108 4.81334 4.84690 4.95856 4.99361 5.06695 5.07264 5.18111 5.25144 5.43129 5.58388 5.63671 5.73099 6.17740 6.48722 6.97779 7.08249 7.20713 7.74417 8.37944 9.23972 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.002166 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.973183 B =12924.292544 C =13648.404853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.039 3.961 3 N -0.371 5.371 4 O 0.096 5.904 5 C -0.001 4.001 6 Cl 0.059 6.941 7 C -0.162 4.162 8 C -0.026 4.026 9 C -0.122 4.122 10 C 0.511 3.489 11 O -0.585 6.585 12 N -0.601 5.601 13 C 0.067 3.933 14 C 0.139 3.861 15 H 0.079 0.921 16 C -0.133 4.133 17 C 0.187 3.813 18 N -0.626 5.626 19 C -0.242 4.242 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.290 1.290 27 C 0.132 3.868 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.008 0.992 41 H 0.015 0.985 42 H 0.248 0.752 43 H 0.043 0.957 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 25.529 6.596 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.080 5.080 4 O 0.032 5.968 5 C -0.091 4.091 6 Cl 0.087 6.913 7 C -0.167 4.167 8 C -0.064 4.064 9 C -0.162 4.162 10 C 0.301 3.699 11 O -0.466 6.466 12 N -0.332 5.332 13 C -0.074 4.074 14 C 0.034 3.966 15 H 0.097 0.903 16 C -0.172 4.172 17 C 0.062 3.938 18 N -0.353 5.353 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.217 1.217 27 C 0.006 3.994 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.033 0.967 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.360 26.285 7.054 27.738 hybrid contribution 0.404 -2.226 -0.283 2.280 sum 5.764 24.059 6.771 25.650 Atomic orbital electron populations 1.20428 0.83169 1.05379 1.04914 1.23838 1.00385 0.87261 1.00523 1.73967 0.88832 1.23884 1.21311 1.84899 1.22192 1.21171 1.68545 1.24797 0.91703 0.84768 1.07871 1.98480 1.27710 1.68507 1.96590 1.20866 0.89666 0.98193 1.07985 1.19644 1.03995 0.86228 0.96536 1.21664 1.05593 0.90235 0.98671 1.21238 0.75908 0.90218 0.82529 1.90697 1.53226 1.70183 1.32465 1.47840 1.67853 1.09805 1.07695 1.22094 1.02730 0.98205 0.84420 1.21900 0.94435 0.81006 0.99295 0.90269 1.23038 0.96761 0.97158 1.00259 1.20880 0.84774 0.90873 0.97276 1.44682 1.02435 1.09395 1.78755 1.19474 0.92172 0.88271 1.37177 0.89978 1.25670 0.95873 1.01917 1.02420 1.70181 1.02111 1.32480 1.55205 0.84993 0.77987 0.79211 0.77022 1.18989 1.22040 1.21650 1.21860 0.93566 0.88183 0.95805 0.88729 0.89404 0.87985 0.90216 0.88806 0.85697 0.86948 0.91353 0.90887 0.87518 0.90890 0.89447 0.97332 0.96657 0.94311 0.93976 0.94915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 71.24 0.74 -0.01 16 2 C 0.04 0.59 7.32 43.55 0.32 0.91 16 3 N -0.37 -7.17 12.07 -49.43 -0.60 -7.77 16 4 O 0.10 1.82 11.20 71.41 0.80 2.62 16 5 C 0.00 -0.02 8.12 67.22 0.55 0.52 16 6 Cl 0.06 0.84 29.23 -2.72 -0.08 0.76 16 7 C -0.16 -2.48 5.58 -19.71 -0.11 -2.59 16 8 C -0.03 -0.40 4.90 29.85 0.15 -0.26 16 9 C -0.12 -1.74 4.23 29.85 0.13 -1.61 16 10 C 0.51 12.51 7.67 87.65 0.67 13.18 16 11 O -0.59 -19.65 15.36 -3.03 -0.05 -19.69 16 12 N -0.60 -15.14 2.91 -814.84 -2.37 -17.51 16 13 C 0.07 1.12 8.85 127.77 1.13 2.25 16 14 C 0.14 4.86 3.45 46.38 0.16 5.02 16 15 H 0.08 3.24 7.02 -2.38 -0.02 3.22 16 16 C -0.13 -4.76 6.51 31.78 0.21 -4.55 16 17 C 0.19 9.21 5.37 86.73 0.47 9.67 16 18 N -0.63 -32.16 3.39 -692.02 -2.35 -34.51 16 19 C -0.24 -13.61 10.28 84.03 0.86 -12.74 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 22 N -0.95 -57.26 10.31 21.65 0.22 -57.04 16 23 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 C 0.13 5.32 6.79 86.85 0.59 5.91 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.13 1.10 7.40 -2.39 -0.02 1.08 16 34 H 0.11 1.28 8.11 -2.38 -0.02 1.26 16 35 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.07 1.36 6.42 -2.39 -0.02 1.34 16 37 H 0.11 0.97 6.44 -2.39 -0.02 0.96 16 38 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.09 2.67 6.40 -2.39 -0.02 2.65 16 40 H 0.01 0.47 7.38 -2.39 -0.02 0.46 16 41 H 0.02 0.83 7.50 -2.39 -0.02 0.81 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.04 1.55 7.00 -2.39 -0.02 1.54 16 44 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.45 375.12 4.95 -68.50 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.02 Total: 4.38 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.32 Total: 12.42 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.09 Total: -116.82 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.75 Total: -17.08 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -73.45 4.95 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714029918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.448 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds