Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30214 * 126.78900 * 2 1 4 4 O 1.20928 * 111.64455 * 180.28745 * 3 2 1 5 5 C 1.34062 * 111.55246 * 359.70715 * 4 3 2 6 6 Cl 1.73601 * 126.79773 * 180.02562 * 5 4 3 7 7 C 1.35675 * 106.40716 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.01618 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47266 * 90.02256 * 8 7 5 10 10 O 1.21281 * 119.99775 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99967 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99806 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.05463 * 326.41188 * 12 11 9 14 14 C 1.54263 * 110.03216 * 87.83421 * 12 11 9 15 15 C 1.54892 * 104.19428 * 142.89267 * 14 12 11 16 16 C 1.54886 * 102.74868 * 322.05731 * 15 14 12 17 17 C 1.53874 * 110.02797 * 205.00372 * 12 11 9 18 18 H 1.08999 * 110.03223 * 121.38329 * 17 12 11 19 19 C 1.52996 * 110.03650 * 359.97438 * 17 12 11 20 20 N 1.46498 * 109.47059 * 175.00048 * 19 17 12 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.09001 * 109.46880 * 270.19515 * 1 2 3 30 30 H 1.09000 * 109.46843 * 30.19748 * 1 2 3 31 31 H 1.08998 * 109.47090 * 150.19926 * 1 2 3 32 32 H 1.09000 * 109.47076 * 330.02599 * 8 7 5 33 33 H 1.09002 * 109.47215 * 210.02531 * 8 7 5 34 34 H 0.97001 * 119.99871 * 0.02562 * 11 9 8 35 35 H 1.09003 * 110.48530 * 261.57376 * 14 12 11 36 36 H 1.08999 * 110.48723 * 24.21506 * 14 12 11 37 37 H 1.09000 * 110.75254 * 80.37224 * 15 14 12 38 38 H 1.08997 * 110.75639 * 203.55554 * 15 14 12 39 39 H 1.08998 * 110.48868 * 279.26552 * 16 15 14 40 40 H 1.09003 * 110.48430 * 156.61739 * 16 15 14 41 41 H 1.09004 * 109.47066 * 55.00316 * 19 17 12 42 42 H 1.08994 * 109.46974 * 295.00464 * 19 17 12 43 43 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 44 44 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4541 0.7269 -0.0056 5 6 3.6037 -0.6053 -0.0039 6 17 5.1012 -1.4835 -0.0096 7 6 2.3531 -1.1314 0.0044 8 6 1.9580 -2.5857 0.0101 9 6 1.8337 -3.0670 1.4328 10 8 2.0448 -2.3040 2.3516 11 7 1.4881 -4.3452 1.6840 12 6 1.3668 -4.8129 3.0671 13 1 2.0943 -4.3035 3.6991 14 6 -0.0612 -4.5526 3.5896 15 6 -0.3719 -5.7847 4.4753 16 6 0.2860 -6.9457 3.6889 17 6 1.5876 -6.3344 3.1302 18 1 2.4227 -6.5633 3.7923 19 6 1.8641 -6.8825 1.7289 20 7 2.1897 -8.3081 1.8176 21 6 2.4705 -9.0183 0.6809 22 1 2.4562 -8.5264 -0.2805 23 6 2.7734 -10.3704 0.7643 24 7 2.7903 -10.9699 1.9360 25 14 3.1571 -11.3390 -0.7861 26 1 4.6163 -11.2829 -1.0565 27 1 2.7419 -12.7528 -0.6020 28 1 2.4184 -10.7514 -1.9324 29 1 -0.3633 0.0035 1.0277 30 1 -0.3633 0.8882 -0.5169 31 1 -0.3633 -0.8918 -0.5107 32 1 2.7189 -3.1710 -0.5062 33 1 1.0012 -2.7043 -0.4985 34 1 1.3197 -4.9555 0.9491 35 1 -0.0895 -3.6390 4.1834 36 1 -0.7657 -4.4917 2.7601 37 1 0.0839 -5.6777 5.4596 38 1 -1.4478 -5.9353 4.5639 39 1 -0.3624 -7.2711 2.8755 40 1 0.5110 -7.7784 4.3553 41 1 2.7033 -6.3449 1.2875 42 1 0.9796 -6.7499 1.1059 43 1 2.2022 -8.7500 2.6810 44 1 3.0023 -11.9146 1.9943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = 26.650471 kcal Electronic energy + Delta-G solvation = -27528.155438 eV Core-core repulsion = 23509.965895 eV Total energy + Delta-G solvation = -4018.189543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.29744 -40.16384 -38.16899 -37.44050 -35.57436 -34.41100 -33.64876 -32.65046 -31.45835 -29.59747 -28.95866 -28.58379 -27.08063 -24.61068 -22.73647 -22.52373 -21.75191 -20.74574 -20.40292 -19.07634 -18.19348 -17.99773 -17.38457 -16.98242 -16.01905 -15.83164 -15.23494 -15.09642 -14.58796 -14.29024 -14.03671 -13.76817 -13.67641 -13.55722 -13.36832 -13.05364 -13.00498 -12.92726 -12.65712 -12.46264 -12.26803 -12.07432 -11.63415 -11.35148 -11.17013 -10.91235 -10.87878 -10.84446 -10.53591 -10.43740 -10.34441 -10.31703 -10.01319 -9.91835 -9.73931 -9.42197 -9.02033 -8.88556 -6.99176 -5.82588 -3.11757 0.80687 0.97013 1.77443 2.59304 3.17260 3.38077 3.38994 3.43990 3.45926 3.74117 4.22933 4.48066 4.50090 4.56222 4.67202 4.78989 4.88637 5.07609 5.08637 5.18383 5.24483 5.33126 5.36572 5.42574 5.49164 5.59736 5.62722 5.72738 5.75629 5.82193 5.89107 6.01493 6.13567 6.17641 6.26292 6.40375 6.54298 6.56264 6.67930 6.77235 7.52538 7.62387 7.79787 8.21281 8.35943 9.47439 10.04725 10.39065 11.40099 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002937 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.295343 B = 9531.133918 C =11100.248622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.014 3.986 6 Cl 0.052 6.948 7 C -0.148 4.148 8 C -0.071 4.071 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.718 5.718 12 C 0.150 3.850 13 H 0.089 0.911 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.108 4.108 18 H 0.082 0.918 19 C 0.158 3.842 20 N -0.728 5.728 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.408 0.592 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.017 0.983 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 20.005 -2.431 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 N -0.056 5.056 4 O 0.043 5.957 5 C -0.077 4.077 6 Cl 0.081 6.919 7 C -0.153 4.153 8 C -0.112 4.112 9 C 0.300 3.700 10 O -0.414 6.414 11 N -0.372 5.372 12 C 0.045 3.955 13 H 0.107 0.893 14 C -0.169 4.169 15 C -0.163 4.163 16 C -0.149 4.149 17 C -0.127 4.127 18 H 0.100 0.900 19 C 0.030 3.970 20 N -0.373 5.373 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.246 0.754 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.622 21.729 -1.947 22.301 hybrid contribution 0.464 -1.986 -0.893 2.226 sum -4.158 19.744 -2.841 20.376 Atomic orbital electron populations 1.20228 0.85259 1.03965 1.04011 1.23234 0.99053 0.87738 1.01434 1.73916 0.88495 1.22886 1.20324 1.84900 1.22127 1.20584 1.68134 1.24523 0.91069 0.84921 1.07140 1.98474 1.28082 1.68783 1.96602 1.20077 0.90087 0.96771 1.08396 1.20013 1.05235 0.89710 0.96219 1.20290 0.76740 0.82357 0.90585 1.90709 1.49686 1.54739 1.46273 1.46365 1.69919 1.11226 1.09709 1.21652 0.97322 0.94495 0.82081 0.89335 1.22752 0.96281 0.98361 0.99542 1.22489 1.00387 0.94918 0.98500 1.22354 0.95719 0.97156 0.99653 1.22223 0.98997 0.92183 0.99335 0.89992 1.20683 0.96565 0.87122 0.92659 1.42324 1.83774 1.03685 1.07486 1.19197 1.39569 0.91392 0.87214 0.91229 1.24741 1.02545 0.96840 0.96692 1.69658 1.55424 1.10661 1.22231 0.86205 0.78053 0.79537 0.82459 1.21707 1.21764 1.20748 0.89564 0.90145 0.89732 0.86893 0.86794 0.75362 0.91603 0.91338 0.91613 0.91647 0.90988 0.91207 0.96127 0.96512 0.78142 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.39 36.00 0.37 -0.21 16 2 C 0.04 0.49 7.32 -82.12 -0.60 -0.11 16 3 N -0.35 -4.42 12.07 33.44 0.40 -4.01 16 4 O 0.11 1.35 11.20 17.12 0.19 1.54 16 5 C 0.01 0.16 8.12 29.82 0.24 0.40 16 6 Cl 0.05 0.54 29.23 -51.86 -1.52 -0.97 16 7 C -0.15 -1.64 4.82 -104.38 -0.50 -2.14 16 8 C -0.07 -0.66 6.10 -29.03 -0.18 -0.84 16 9 C 0.51 6.34 7.82 -10.99 -0.09 6.25 16 10 O -0.54 -8.53 15.69 5.56 0.09 -8.44 16 11 N -0.72 -8.57 4.39 -52.72 -0.23 -8.80 16 12 C 0.15 1.95 3.23 -66.81 -0.22 1.74 16 13 H 0.09 1.27 7.57 -51.93 -0.39 0.88 16 14 C -0.13 -1.52 6.53 -25.07 -0.16 -1.69 16 15 C -0.13 -1.44 6.91 -24.74 -0.17 -1.61 16 16 C -0.11 -1.57 6.08 -25.07 -0.15 -1.72 16 17 C -0.11 -1.61 2.96 -89.50 -0.27 -1.88 16 18 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 19 C 0.16 2.82 4.18 -4.04 -0.02 2.80 16 20 N -0.73 -17.26 5.45 -59.91 -0.33 -17.59 16 21 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 25 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.11 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.41 4.50 5.90 -40.82 -0.24 4.26 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.09 7.76 -51.93 -0.40 0.69 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.38 7.42 -51.93 -0.39 -0.01 16 42 H 0.02 0.30 7.10 -51.93 -0.37 -0.07 16 43 H 0.38 9.73 7.55 -40.82 -0.31 9.42 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -32.20 379.83 -8.19 -40.39 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.24 Total: 8.20 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.98 Total: -6.04 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.57 Total: -57.04 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.28 Total: -6.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -1.52 Total: -0.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.20 -8.19 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.037 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds