Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30212 * 126.78915 * 2 1 4 4 O 1.20922 * 111.64793 * 179.97438 * 3 2 1 5 5 C 1.34072 * 111.54799 * 359.76075 * 4 3 2 6 6 Cl 1.73604 * 126.79314 * 180.25866 * 5 4 3 7 7 C 1.35677 * 106.40877 * 0.38232 * 5 4 3 8 8 C 1.50696 * 128.01175 * 179.91180 * 7 5 4 9 9 C 1.50707 * 109.47027 * 269.67416 * 8 7 5 10 10 O 1.21281 * 119.99941 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99901 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00080 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.53903 * 323.84285 * 12 11 9 14 14 C 1.54268 * 110.48921 * 86.45526 * 12 11 9 15 15 C 1.53869 * 106.60115 * 142.28956 * 14 12 11 16 16 C 1.54270 * 106.63967 * 359.97438 * 15 14 12 17 17 C 1.54895 * 110.48864 * 201.23194 * 12 11 9 18 18 H 1.09001 * 110.75082 * 321.69036 * 17 12 11 19 19 C 1.52994 * 110.75628 * 84.87699 * 17 12 11 20 20 N 1.46503 * 109.47139 * 185.00262 * 19 17 12 21 21 C 1.36936 * 120.00044 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99896 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99768 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99775 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47318 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46945 * 120.00117 * 25 23 21 28 28 H 1.48505 * 109.46942 * 239.99719 * 25 23 21 29 29 H 1.09001 * 109.47538 * 270.02463 * 1 2 3 30 30 H 1.08996 * 109.47432 * 30.02423 * 1 2 3 31 31 H 1.09006 * 109.47633 * 150.02583 * 1 2 3 32 32 H 1.09000 * 109.46526 * 149.68076 * 8 7 5 33 33 H 1.08993 * 109.47408 * 29.67682 * 8 7 5 34 34 H 0.97001 * 120.00178 * 0.02562 * 11 9 8 35 35 H 1.08999 * 110.03048 * 23.00239 * 14 12 11 36 36 H 1.08996 * 110.03060 * 261.57828 * 14 12 11 37 37 H 1.09002 * 110.03268 * 119.28653 * 15 14 12 38 38 H 1.08995 * 110.03391 * 240.66959 * 15 14 12 39 39 H 1.08997 * 110.48585 * 95.09409 * 16 15 14 40 40 H 1.09002 * 110.48442 * 217.73292 * 16 15 14 41 41 H 1.08995 * 109.47442 * 305.00103 * 19 17 12 42 42 H 1.09000 * 109.46886 * 65.00268 * 19 17 12 43 43 H 0.97006 * 119.99896 * 359.97438 * 20 19 17 44 44 H 0.96992 * 120.00230 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6036 -0.6054 0.0061 6 17 5.1012 -1.4835 0.0151 7 6 2.3530 -1.1315 0.0006 8 6 1.9580 -2.5858 0.0016 9 6 1.8261 -3.0715 -1.4189 10 8 2.0330 -2.3116 -2.3413 11 7 1.4782 -4.3502 -1.6643 12 6 1.3505 -4.8225 -3.0451 13 1 0.9402 -4.0381 -3.6812 14 6 2.7173 -5.2941 -3.5831 15 6 2.4428 -6.5300 -4.4576 16 6 0.9190 -6.7678 -4.4206 17 6 0.4612 -6.0893 -3.1048 18 1 0.6540 -6.7371 -2.2496 19 6 -1.0193 -5.7097 -3.1721 20 7 -1.8380 -6.9230 -3.1070 21 6 -3.2035 -6.8307 -3.1510 22 1 -3.6770 -5.8636 -3.2333 23 6 -3.9791 -7.9804 -3.0899 24 7 -3.4020 -9.1591 -2.9901 25 14 -5.8419 -7.8545 -3.1492 26 1 -6.2384 -6.4279 -3.2612 27 1 -6.3514 -8.6042 -4.3255 28 1 -6.4168 -8.4316 -1.9075 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.0040 -2.7027 0.5156 33 1 2.7216 -3.1694 0.5157 34 1 1.3124 -4.9578 -0.9266 35 1 3.3728 -5.5612 -2.7542 36 1 3.1745 -4.5067 -4.1824 37 1 2.7668 -6.3426 -5.4813 38 1 2.9658 -7.3968 -4.0535 39 1 0.4387 -6.2980 -5.2789 40 1 0.6999 -7.8353 -4.3967 41 1 -1.2663 -5.0595 -2.3329 42 1 -1.2182 -5.1870 -4.1076 43 1 -1.4126 -7.7917 -3.0334 44 1 -3.9439 -9.9624 -2.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716070566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = 17.670548 kcal Electronic energy + Delta-G solvation = -27268.462523 eV Core-core repulsion = 23249.883581 eV Total energy + Delta-G solvation = -4018.578942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -45.33552 -40.07083 -38.11074 -37.53644 -35.60002 -34.49468 -33.66748 -32.69273 -31.43718 -29.63442 -28.94179 -28.59928 -27.15183 -24.54090 -22.80000 -22.11782 -21.78867 -20.85462 -20.24113 -19.56021 -18.19001 -18.03947 -17.31126 -16.81431 -16.54913 -15.85978 -15.31488 -14.81144 -14.47641 -14.38098 -13.93006 -13.72050 -13.65072 -13.40700 -13.26679 -13.21497 -12.97954 -12.91534 -12.75313 -12.59601 -12.27161 -12.11774 -11.89178 -11.30673 -11.21012 -10.99088 -10.93748 -10.78079 -10.49923 -10.36596 -10.34411 -10.26351 -10.00440 -9.95278 -9.73333 -9.48284 -9.01361 -8.90298 -6.94547 -5.79673 -3.07982 0.72426 0.92171 1.74773 2.53432 3.10232 3.32811 3.40957 3.47188 3.49051 3.72401 4.19481 4.47323 4.49494 4.53158 4.65856 4.80316 4.85756 5.00456 5.04627 5.18832 5.23516 5.33427 5.40004 5.42212 5.52610 5.60261 5.61584 5.73070 5.78583 5.79397 5.91075 6.05563 6.15439 6.21208 6.27624 6.45902 6.52826 6.55969 6.73431 6.87110 7.45475 7.68149 7.77589 8.15351 8.39426 9.50913 10.08521 10.43375 11.43252 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002585 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.134752 B =10828.616348 C =12372.660636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.047 3.953 3 N -0.348 5.348 4 O 0.109 5.891 5 C 0.012 3.988 6 Cl 0.047 6.953 7 C -0.147 4.147 8 C -0.071 4.071 9 C 0.515 3.485 10 O -0.532 6.532 11 N -0.716 5.716 12 C 0.148 3.852 13 H 0.094 0.906 14 C -0.131 4.131 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.081 0.919 19 C 0.162 3.838 20 N -0.731 5.731 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.239 13.185 7.945 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.078 4.078 6 Cl 0.075 6.925 7 C -0.153 4.153 8 C -0.111 4.111 9 C 0.300 3.700 10 O -0.409 6.409 11 N -0.367 5.367 12 C 0.043 3.957 13 H 0.112 0.888 14 C -0.170 4.170 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.099 0.901 19 C 0.034 3.966 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.141 15.056 7.254 23.940 hybrid contribution -0.761 -1.506 0.337 1.721 sum 16.380 13.550 7.591 22.573 Atomic orbital electron populations 1.20259 0.85049 1.04701 1.03693 1.23277 0.99163 0.87630 1.01143 1.73926 0.88444 1.22855 1.20240 1.84908 1.22194 1.20486 1.68113 1.24468 0.90752 0.85050 1.07557 1.98453 1.28316 1.69010 1.96681 1.20083 0.90057 0.96804 1.08309 1.20013 1.05253 0.89657 0.96170 1.20283 0.76905 0.82151 0.90625 1.90731 1.49286 1.54893 1.45951 1.46024 1.70109 1.11268 1.09317 1.21908 0.95207 0.96645 0.81956 0.88826 1.22499 0.97095 0.97887 0.99548 1.22123 0.97189 0.97282 0.99530 1.22298 0.93883 1.01542 0.97175 1.22570 0.95732 0.94876 0.98930 0.90093 1.20635 0.87460 0.90649 0.97834 1.42339 1.02958 1.03238 1.88964 1.19268 0.82664 0.92854 1.42117 0.91228 1.24727 0.97917 0.95296 1.03049 1.69662 1.34041 0.96885 1.57641 0.86137 0.85776 0.77216 0.77200 1.20565 1.21868 1.21887 0.89598 0.89962 0.89482 0.86551 0.87140 0.76288 0.91756 0.91638 0.91998 0.91935 0.91218 0.90741 0.96452 0.96256 0.78275 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.39 36.00 0.37 -0.30 16 2 C 0.05 0.52 7.32 -82.12 -0.60 -0.08 16 3 N -0.35 -4.37 12.07 33.44 0.40 -3.97 16 4 O 0.11 1.30 11.20 17.09 0.19 1.50 16 5 C 0.01 0.13 8.12 29.82 0.24 0.37 16 6 Cl 0.05 0.41 29.23 -51.86 -1.52 -1.11 16 7 C -0.15 -1.54 4.82 -104.38 -0.50 -2.05 16 8 C -0.07 -0.59 6.10 -29.03 -0.18 -0.76 16 9 C 0.52 5.96 7.82 -10.98 -0.09 5.87 16 10 O -0.53 -8.32 15.75 5.56 0.09 -8.23 16 11 N -0.72 -7.72 5.11 -52.20 -0.27 -7.99 16 12 C 0.15 1.89 2.60 -66.27 -0.17 1.72 16 13 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 14 C -0.13 -1.53 6.53 -25.62 -0.17 -1.70 16 15 C -0.12 -1.43 6.80 -25.61 -0.17 -1.60 16 16 C -0.11 -1.58 6.22 -25.03 -0.16 -1.74 16 17 C -0.10 -1.49 2.49 -88.59 -0.22 -1.71 16 18 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 19 C 0.16 3.08 5.71 -4.04 -0.02 3.06 16 20 N -0.73 -17.70 5.52 -59.91 -0.33 -18.03 16 21 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 25 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 3.46 8.53 -40.82 -0.35 3.11 16 35 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 43 H 0.38 9.72 7.67 -40.82 -0.31 9.40 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -33.01 386.57 -8.31 -41.32 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.49 Total: 6.58 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.91 Total: -6.07 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.53 Total: -56.85 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.28 Total: -6.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.52 Total: -1.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.01 -8.31 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.987 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds