Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30212 * 126.78915 * 2 1 4 4 O 1.20922 * 111.64793 * 179.97438 * 3 2 1 5 5 C 1.34072 * 111.54799 * 359.76075 * 4 3 2 6 6 Cl 1.73604 * 126.79314 * 180.25866 * 5 4 3 7 7 C 1.35677 * 106.40877 * 0.38232 * 5 4 3 8 8 C 1.50696 * 128.01175 * 179.91180 * 7 5 4 9 9 C 1.50707 * 109.47027 * 269.67416 * 8 7 5 10 10 O 1.21281 * 119.99941 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99901 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00080 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.53903 * 323.84285 * 12 11 9 14 14 C 1.54268 * 110.48921 * 86.45526 * 12 11 9 15 15 C 1.53869 * 106.60115 * 142.28956 * 14 12 11 16 16 C 1.54270 * 106.63967 * 359.97438 * 15 14 12 17 17 C 1.54895 * 110.48864 * 201.23194 * 12 11 9 18 18 H 1.09001 * 110.75082 * 321.69036 * 17 12 11 19 19 C 1.52994 * 110.75628 * 84.87699 * 17 12 11 20 20 N 1.46503 * 109.47139 * 185.00262 * 19 17 12 21 21 C 1.36936 * 120.00044 * 180.02562 * 20 19 17 22 22 H 1.07994 * 119.99896 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99768 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99775 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47318 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46945 * 120.00117 * 25 23 21 28 28 H 1.48505 * 109.46942 * 239.99719 * 25 23 21 29 29 H 1.09001 * 109.47538 * 270.02463 * 1 2 3 30 30 H 1.08996 * 109.47432 * 30.02423 * 1 2 3 31 31 H 1.09006 * 109.47633 * 150.02583 * 1 2 3 32 32 H 1.09000 * 109.46526 * 149.68076 * 8 7 5 33 33 H 1.08993 * 109.47408 * 29.67682 * 8 7 5 34 34 H 0.97001 * 120.00178 * 0.02562 * 11 9 8 35 35 H 1.08999 * 110.03048 * 23.00239 * 14 12 11 36 36 H 1.08996 * 110.03060 * 261.57828 * 14 12 11 37 37 H 1.09002 * 110.03268 * 119.28653 * 15 14 12 38 38 H 1.08995 * 110.03391 * 240.66959 * 15 14 12 39 39 H 1.08997 * 110.48585 * 95.09409 * 16 15 14 40 40 H 1.09002 * 110.48442 * 217.73292 * 16 15 14 41 41 H 1.08995 * 109.47442 * 305.00103 * 19 17 12 42 42 H 1.09000 * 109.46886 * 65.00268 * 19 17 12 43 43 H 0.97006 * 119.99896 * 359.97438 * 20 19 17 44 44 H 0.96992 * 120.00230 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6036 -0.6054 0.0061 6 17 5.1012 -1.4835 0.0151 7 6 2.3530 -1.1315 0.0006 8 6 1.9580 -2.5858 0.0016 9 6 1.8261 -3.0715 -1.4189 10 8 2.0330 -2.3116 -2.3413 11 7 1.4782 -4.3502 -1.6643 12 6 1.3505 -4.8225 -3.0451 13 1 0.9402 -4.0381 -3.6812 14 6 2.7173 -5.2941 -3.5831 15 6 2.4428 -6.5300 -4.4576 16 6 0.9190 -6.7678 -4.4206 17 6 0.4612 -6.0893 -3.1048 18 1 0.6540 -6.7371 -2.2496 19 6 -1.0193 -5.7097 -3.1721 20 7 -1.8380 -6.9230 -3.1070 21 6 -3.2035 -6.8307 -3.1510 22 1 -3.6770 -5.8636 -3.2333 23 6 -3.9791 -7.9804 -3.0899 24 7 -3.4020 -9.1591 -2.9901 25 14 -5.8419 -7.8545 -3.1492 26 1 -6.2384 -6.4279 -3.2612 27 1 -6.3514 -8.6042 -4.3255 28 1 -6.4168 -8.4316 -1.9075 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.0040 -2.7027 0.5156 33 1 2.7216 -3.1694 0.5157 34 1 1.3124 -4.9578 -0.9266 35 1 3.3728 -5.5612 -2.7542 36 1 3.1745 -4.5067 -4.1824 37 1 2.7668 -6.3426 -5.4813 38 1 2.9658 -7.3968 -4.0535 39 1 0.4387 -6.2980 -5.2789 40 1 0.6999 -7.8353 -4.3967 41 1 -1.2663 -5.0595 -2.3329 42 1 -1.2182 -5.1870 -4.1076 43 1 -1.4126 -7.7917 -3.0334 44 1 -3.9439 -9.9624 -2.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716070566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -3.443627 kcal Electronic energy + Delta-G solvation = -27269.378102 eV Core-core repulsion = 23249.883581 eV Total energy + Delta-G solvation = -4019.494521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.16028 -41.05997 -39.21663 -38.27813 -36.45797 -36.22008 -34.71294 -33.49526 -33.27646 -30.48556 -30.13443 -29.66990 -28.13471 -26.28549 -24.05935 -23.43004 -22.58054 -21.79842 -21.35380 -20.64770 -19.25417 -19.00039 -18.81336 -17.82294 -17.62657 -16.69114 -16.63423 -16.20545 -15.79750 -15.38798 -15.12865 -15.05141 -14.71096 -14.64227 -14.31012 -14.23733 -14.13642 -13.69980 -13.56538 -13.47625 -13.30508 -13.09883 -12.96357 -12.88399 -12.78221 -12.32273 -12.10267 -12.03488 -11.97050 -11.85859 -11.58424 -11.56056 -11.28227 -11.20482 -10.92619 -10.85843 -10.29326 -10.00477 -8.96819 -7.93755 -5.21470 -0.04528 0.11979 0.94429 1.48521 1.49345 1.58949 1.65138 2.24482 2.52330 2.57066 2.97317 3.39706 3.45759 3.48534 3.69306 3.75129 3.75409 3.91819 4.04136 4.21138 4.40991 4.44929 4.51693 4.54528 4.56389 4.61347 4.63164 4.68292 4.71114 4.72134 4.75572 4.99250 5.06692 5.12624 5.17499 5.26172 5.27236 5.32485 5.49141 5.53726 5.64953 6.29115 6.60171 6.95811 7.28768 7.36243 8.11881 8.36283 9.29654 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002585 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.134752 B =10828.616348 C =12372.660636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.039 3.961 3 N -0.374 5.374 4 O 0.095 5.905 5 C 0.006 3.994 6 Cl 0.064 6.936 7 C -0.154 4.154 8 C -0.065 4.065 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.156 3.844 13 H 0.071 0.929 14 C -0.123 4.123 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.090 4.090 18 H 0.089 0.911 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.295 1.295 28 H -0.291 1.291 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.008 0.992 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.719 13.105 9.050 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 N -0.083 5.083 4 O 0.031 5.969 5 C -0.084 4.084 6 Cl 0.092 6.908 7 C -0.159 4.159 8 C -0.105 4.105 9 C 0.303 3.697 10 O -0.456 6.456 11 N -0.360 5.360 12 C 0.051 3.949 13 H 0.089 0.911 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.109 4.109 18 H 0.108 0.892 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.798 3.202 26 H -0.193 1.193 27 H -0.222 1.222 28 H -0.218 1.218 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.253 0.747 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.645 14.992 8.380 24.624 hybrid contribution -0.878 -1.447 -0.034 1.692 sum 16.768 13.545 8.347 23.115 Atomic orbital electron populations 1.20373 0.83531 1.04636 1.05163 1.23783 1.00296 0.87659 1.00180 1.73915 0.88851 1.23877 1.21704 1.84864 1.22146 1.21266 1.68590 1.24760 0.91745 0.84807 1.07113 1.98455 1.27333 1.68428 1.96569 1.20371 0.89776 0.97683 1.08067 1.20128 1.07687 0.88482 0.94174 1.20790 0.75705 0.81646 0.91521 1.90723 1.51276 1.55962 1.47603 1.45927 1.69657 1.11521 1.08876 1.21634 0.95422 0.94918 0.82970 0.91103 1.22429 0.96265 0.97579 0.99927 1.22061 0.94880 0.97864 1.00331 1.22259 0.96072 1.00352 0.96384 1.22401 0.92978 0.96001 0.99524 0.89241 1.20738 0.89717 0.88804 0.97098 1.42497 1.02529 1.04456 1.88754 1.19614 0.84277 0.92844 1.40755 0.91120 1.25483 1.02092 0.95116 1.03740 1.69798 1.35344 0.97343 1.59220 0.85147 0.80794 0.77561 0.76709 1.19322 1.22225 1.21847 0.87291 0.90195 0.89318 0.83807 0.84318 0.74672 0.90132 0.92077 0.91129 0.90439 0.92668 0.92148 0.96127 0.97379 0.79147 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.39 71.23 0.74 -0.51 16 2 C 0.04 0.84 7.32 43.55 0.32 1.16 16 3 N -0.37 -9.36 12.07 -49.42 -0.60 -9.95 16 4 O 0.10 2.27 11.20 71.34 0.80 3.06 16 5 C 0.01 0.12 8.12 67.23 0.55 0.67 16 6 Cl 0.06 1.01 29.23 -2.72 -0.08 0.93 16 7 C -0.15 -2.98 4.82 -19.71 -0.10 -3.08 16 8 C -0.07 -0.90 6.10 29.10 0.18 -0.72 16 9 C 0.52 10.92 7.82 87.66 0.69 11.61 16 10 O -0.58 -17.51 15.75 -3.03 -0.05 -17.56 16 11 N -0.71 -13.68 5.11 -437.44 -2.24 -15.91 16 12 C 0.16 3.79 2.60 46.07 0.12 3.91 16 13 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 14 C -0.12 -2.60 6.53 31.32 0.20 -2.40 16 15 C -0.11 -2.41 6.80 31.32 0.21 -2.19 16 16 C -0.11 -3.14 6.22 31.70 0.20 -2.95 16 17 C -0.09 -2.53 2.49 -9.48 -0.02 -2.56 16 18 H 0.09 2.42 8.02 -2.39 -0.02 2.40 16 19 C 0.16 6.16 5.71 86.38 0.49 6.65 16 20 N -0.74 -35.85 5.52 -343.46 -1.90 -37.75 16 21 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 25 Si 0.97 45.25 29.55 68.60 2.03 47.27 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.42 5.87 8.53 -92.71 -0.79 5.08 16 35 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 43 H 0.38 19.19 7.67 -92.70 -0.71 18.48 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.51 386.57 2.67 -68.84 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.46 Total: 24.60 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 4.88 Total: -6.38 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.45 Total: -120.76 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.75 Total: -14.50 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -71.51 2.67 -68.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716070566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.394 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds