Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33316 * 126.81135 * 2 1 4 4 N 1.28513 * 109.44109 * 179.97438 * 3 2 1 5 5 N 1.28716 * 110.63745 * 359.71757 * 4 3 2 6 6 H 0.96999 * 126.03798 * 180.29462 * 5 4 3 7 7 C 1.36997 * 126.81547 * 179.97438 * 2 1 3 8 8 C 1.47236 * 127.19070 * 0.02562 * 7 2 1 9 9 O 1.21613 * 119.99849 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99900 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99665 * 179.72407 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.46494 * 119.99955 * 90.00392 * 14 13 12 16 16 C 1.34777 * 119.99692 * 269.99967 * 14 13 12 17 17 O 1.21279 * 120.00487 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.99892 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99863 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99882 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47595 * 89.99786 * 24 22 20 26 26 H 1.48509 * 109.46804 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.47080 * 329.99311 * 24 22 20 28 28 H 1.08999 * 109.46915 * 270.02214 * 1 2 3 29 29 H 1.08999 * 109.47173 * 30.02268 * 1 2 3 30 30 H 1.08999 * 109.47302 * 150.02298 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 32 32 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 33 33 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 34 34 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 35 35 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 36 36 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 37 37 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 38 38 H 1.08998 * 109.47261 * 90.00116 * 15 14 13 39 39 H 1.09006 * 109.46899 * 209.99858 * 15 14 13 40 40 H 1.08991 * 109.47310 * 329.99868 * 15 14 13 41 41 H 1.09002 * 109.46734 * 300.00338 * 18 16 14 42 42 H 1.09001 * 109.47070 * 59.99937 * 18 16 14 43 43 H 0.96996 * 119.99594 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6837 0.0005 5 7 3.6057 -0.6014 0.0069 6 1 4.4213 -1.1264 0.0126 7 6 2.3279 -1.0968 0.0005 8 6 1.9223 -2.5121 0.0006 9 8 0.7423 -2.8064 -0.0002 10 7 2.8586 -3.4815 0.0006 11 6 2.4549 -4.8898 0.0068 12 6 3.7011 -5.7775 0.0124 13 6 3.2794 -7.2482 0.0196 14 7 4.4726 -8.0983 0.0256 15 6 5.0675 -8.5167 1.2972 16 6 5.0230 -8.4953 -1.1389 17 8 4.5308 -8.1486 -2.1917 18 6 6.2501 -9.3702 -1.1327 19 16 6.7442 -9.7284 -2.8368 20 6 8.1584 -10.7366 -2.5397 21 1 8.4651 -10.9516 -1.5267 22 6 8.8782 -11.2544 -3.6075 23 7 9.9350 -12.0072 -3.3856 24 14 8.3481 -10.8819 -5.3595 25 1 9.0212 -9.6439 -5.8278 26 1 8.7256 -12.0149 -6.2424 27 1 6.8760 -10.6911 -5.4012 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.7998 -3.2468 0.0009 32 1 1.8598 -5.0933 0.8972 33 1 1.8619 -5.1017 -0.8828 34 1 4.2961 -5.5740 -0.8778 35 1 4.2941 -5.5657 0.9022 36 1 2.6846 -7.4515 0.9100 37 1 2.6861 -7.4605 -0.8699 38 1 4.6188 -9.4574 1.6162 39 1 6.1416 -8.6515 1.1690 40 1 4.8849 -7.7525 2.0527 41 1 7.0618 -8.8538 -0.6203 42 1 6.0285 -10.3032 -0.6145 43 1 10.4377 -12.3693 -4.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720529620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = 17.734410 kcal Electronic energy + Delta-G solvation = -25823.025791 eV Core-core repulsion = 21838.786076 eV Total energy + Delta-G solvation = -3984.239715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.90076 -40.16224 -39.67481 -36.57728 -35.43059 -34.45056 -33.09600 -32.50103 -32.21430 -29.54810 -28.40946 -27.20682 -25.81838 -25.53295 -24.43397 -22.78194 -22.14930 -21.19441 -19.58091 -19.32034 -17.78101 -17.25570 -17.07598 -16.90799 -16.61461 -16.06183 -15.81538 -15.57154 -15.02957 -14.69968 -14.60319 -14.27530 -13.89575 -13.55447 -13.50645 -13.27794 -13.15867 -12.87560 -12.82239 -12.72106 -12.44849 -12.37367 -12.08417 -12.03523 -11.67971 -11.33216 -11.22848 -11.08538 -11.06574 -10.71828 -10.66212 -9.93934 -9.91878 -9.64816 -9.61205 -9.06518 -8.79409 -8.56845 -6.99514 -6.34945 -4.07437 0.32465 1.75099 1.86384 2.30825 2.49463 2.63720 2.81117 3.11272 3.27735 3.45082 3.52112 3.71691 3.99534 4.25973 4.27042 4.41995 4.47442 4.53181 4.60457 4.73767 4.90883 4.97632 5.04128 5.14116 5.16337 5.18480 5.25715 5.28168 5.36918 5.44513 5.53739 5.61335 5.67934 5.69317 5.79670 5.83286 5.91539 6.01535 6.40526 6.68861 7.27910 7.40049 7.73749 7.87976 8.29876 8.35121 9.11136 10.74191 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.001809 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.420653 B =15470.347391 C =16179.177853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.269 5.269 4 N -0.040 5.040 5 N -0.375 5.375 6 H 0.451 0.549 7 C -0.076 4.076 8 C 0.597 3.403 9 O -0.508 6.508 10 N -0.724 5.724 11 C 0.123 3.877 12 C -0.150 4.150 13 C 0.122 3.878 14 N -0.624 5.624 15 C 0.078 3.922 16 C 0.531 3.469 17 O -0.516 6.516 18 C -0.122 4.122 19 S -0.143 6.143 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 18.614 13.174 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 N -0.136 5.136 4 N -0.022 5.022 5 N -0.102 5.102 6 H 0.298 0.702 7 C -0.209 4.209 8 C 0.380 3.620 9 O -0.382 6.382 10 N -0.375 5.375 11 C 0.000 4.000 12 C -0.190 4.190 13 C -0.002 4.002 14 N -0.360 5.360 15 C -0.065 4.065 16 C 0.319 3.681 17 O -0.390 6.390 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.515 5.515 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.105 20.120 11.540 28.237 hybrid contribution 1.444 -1.632 0.605 2.262 sum -14.660 18.487 12.146 26.537 Atomic orbital electron populations 1.20353 0.84633 1.04649 1.03948 1.22394 0.98752 0.86879 0.99536 1.74994 0.95142 1.25925 1.17519 1.78234 1.16048 0.92137 1.15753 1.45494 1.08796 1.07084 1.48858 0.70202 1.22066 0.85101 0.96442 1.17319 1.16679 0.85989 0.82131 0.77161 1.90859 1.16371 1.81849 1.49073 1.45881 1.09151 1.07008 1.75490 1.21396 0.97293 0.77915 1.03414 1.22211 0.97478 0.95621 1.03644 1.21216 0.87381 0.87857 1.03718 1.47825 1.29771 1.51836 1.06532 1.21816 0.99559 1.00183 0.84959 1.20362 0.84820 0.79944 0.82999 1.90699 1.62269 1.55605 1.30405 1.23318 0.97372 1.01521 1.05008 1.84803 1.37286 1.66564 1.03066 1.22294 1.11804 1.35243 0.97626 0.89393 1.24714 0.93790 0.93464 0.99315 1.69933 1.16907 1.32142 1.32564 0.86739 0.82105 0.78895 0.84133 1.19226 1.19884 1.15931 0.89783 0.90081 0.88653 0.76982 0.90570 0.90281 0.90286 0.91048 0.90276 0.89301 0.92388 0.90478 0.91297 0.88562 0.88452 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.93 36.01 0.36 -0.19 16 2 C 0.06 0.59 7.29 -82.40 -0.60 -0.01 16 3 N -0.27 -2.83 12.35 33.51 0.41 -2.42 16 4 N -0.04 -0.37 13.35 60.35 0.81 0.44 16 5 N -0.37 -2.29 6.98 33.31 0.23 -2.06 16 6 H 0.45 0.94 8.32 -190.33 -1.58 -0.65 16 7 C -0.08 -0.59 7.17 -82.33 -0.59 -1.18 16 8 C 0.60 4.86 7.81 -12.60 -0.10 4.76 16 9 O -0.51 -5.56 14.99 5.27 0.08 -5.49 16 10 N -0.72 -4.20 5.55 -61.44 -0.34 -4.54 16 11 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 12 C -0.15 -1.03 5.65 -26.73 -0.15 -1.18 16 13 C 0.12 1.06 5.41 -4.04 -0.02 1.04 16 14 N -0.62 -7.01 2.87 -181.58 -0.52 -7.53 16 15 C 0.08 0.62 10.24 59.84 0.61 1.24 16 16 C 0.53 8.69 7.69 -10.98 -0.08 8.60 16 17 O -0.52 -10.27 15.44 5.56 0.09 -10.19 16 18 C -0.12 -2.21 4.71 36.01 0.17 -2.05 16 19 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 20 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 21 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 22 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 23 N -0.88 -25.97 13.97 55.49 0.78 -25.20 16 24 Si 0.86 21.32 27.74 -169.99 -4.71 16.60 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.72 6.61 -51.93 -0.34 0.38 16 31 H 0.40 1.26 7.74 -40.82 -0.32 0.95 16 32 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 37 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.65 6.44 -51.93 -0.33 0.32 16 40 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 41 H 0.10 1.61 7.40 -51.91 -0.38 1.23 16 42 H 0.10 1.67 8.11 -51.92 -0.42 1.25 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -37.10 381.36 -6.79 -43.89 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -7.14 Total: -3.89 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.21 Total: 0.13 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.36 Total: -41.31 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.16 Total: -15.67 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.10 -6.79 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720529620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.624 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds