Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33316 * 126.81135 * 2 1 4 4 N 1.28513 * 109.44109 * 179.97438 * 3 2 1 5 5 N 1.28716 * 110.63745 * 359.71757 * 4 3 2 6 6 H 0.96999 * 126.03798 * 180.29462 * 5 4 3 7 7 C 1.36997 * 126.81547 * 179.97438 * 2 1 3 8 8 C 1.47236 * 127.19070 * 0.02562 * 7 2 1 9 9 O 1.21613 * 119.99849 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99900 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99665 * 179.72407 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.46748 * 180.02562 * 13 12 11 15 15 C 1.46494 * 119.99955 * 90.00392 * 14 13 12 16 16 C 1.34777 * 119.99692 * 269.99967 * 14 13 12 17 17 O 1.21279 * 120.00487 * 0.02562 * 16 14 13 18 18 C 1.50703 * 119.99892 * 180.02562 * 16 14 13 19 19 S 1.81002 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99863 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99834 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99874 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99882 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47595 * 89.99786 * 24 22 20 26 26 H 1.48509 * 109.46804 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.47080 * 329.99311 * 24 22 20 28 28 H 1.08999 * 109.46915 * 270.02214 * 1 2 3 29 29 H 1.08999 * 109.47173 * 30.02268 * 1 2 3 30 30 H 1.08999 * 109.47302 * 150.02298 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 32 32 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 33 33 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 34 34 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 35 35 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 36 36 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 37 37 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 38 38 H 1.08998 * 109.47261 * 90.00116 * 15 14 13 39 39 H 1.09006 * 109.46899 * 209.99858 * 15 14 13 40 40 H 1.08991 * 109.47310 * 329.99868 * 15 14 13 41 41 H 1.09002 * 109.46734 * 300.00338 * 18 16 14 42 42 H 1.09001 * 109.47070 * 59.99937 * 18 16 14 43 43 H 0.96996 * 119.99594 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6837 0.0005 5 7 3.6057 -0.6014 0.0069 6 1 4.4213 -1.1264 0.0126 7 6 2.3279 -1.0968 0.0005 8 6 1.9223 -2.5121 0.0006 9 8 0.7423 -2.8064 -0.0002 10 7 2.8586 -3.4815 0.0006 11 6 2.4549 -4.8898 0.0068 12 6 3.7011 -5.7775 0.0124 13 6 3.2794 -7.2482 0.0196 14 7 4.4726 -8.0983 0.0256 15 6 5.0675 -8.5167 1.2972 16 6 5.0230 -8.4953 -1.1389 17 8 4.5308 -8.1486 -2.1917 18 6 6.2501 -9.3702 -1.1327 19 16 6.7442 -9.7284 -2.8368 20 6 8.1584 -10.7366 -2.5397 21 1 8.4651 -10.9516 -1.5267 22 6 8.8782 -11.2544 -3.6075 23 7 9.9350 -12.0072 -3.3856 24 14 8.3481 -10.8819 -5.3595 25 1 9.0212 -9.6439 -5.8278 26 1 8.7256 -12.0149 -6.2424 27 1 6.8760 -10.6911 -5.4012 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 3.7998 -3.2468 0.0009 32 1 1.8598 -5.0933 0.8972 33 1 1.8619 -5.1017 -0.8828 34 1 4.2961 -5.5740 -0.8778 35 1 4.2941 -5.5657 0.9022 36 1 2.6846 -7.4515 0.9100 37 1 2.6861 -7.4605 -0.8699 38 1 4.6188 -9.4574 1.6162 39 1 6.1416 -8.6515 1.1690 40 1 4.8849 -7.7525 2.0527 41 1 7.0618 -8.8538 -0.6203 42 1 6.0285 -10.3032 -0.6145 43 1 10.4377 -12.3693 -4.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720529620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -11.363516 kcal Electronic energy + Delta-G solvation = -25824.287571 eV Core-core repulsion = 21838.786076 eV Total energy + Delta-G solvation = -3985.501496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.53426 -40.97991 -40.64823 -37.39876 -36.28337 -35.09476 -34.67870 -33.76275 -32.96031 -30.75029 -29.06185 -27.93760 -27.85546 -26.43958 -25.12788 -23.47212 -22.74838 -21.84070 -20.68230 -20.04452 -19.55248 -18.16346 -17.82605 -17.68866 -17.40785 -17.12436 -16.90344 -16.69384 -16.53693 -15.78286 -15.34845 -15.21793 -14.91896 -14.88300 -14.58790 -14.35408 -14.03668 -13.72902 -13.60682 -13.47192 -13.36723 -13.30016 -13.07005 -13.02221 -12.94342 -12.73295 -12.59221 -12.32655 -11.90278 -11.81385 -11.71564 -11.40284 -11.17976 -10.93142 -10.57610 -10.52527 -10.21790 -9.72926 -9.00658 -8.52356 -6.23064 -0.29700 0.98376 1.07110 1.30099 1.33683 1.45617 1.51996 1.54206 1.79868 1.86408 2.15135 2.24006 2.68540 2.86047 3.13860 3.43333 3.59151 3.68835 3.87587 3.92346 3.97680 4.12118 4.17564 4.35209 4.45160 4.46325 4.57524 4.58422 4.67867 4.74724 4.79992 4.90746 4.97974 5.04587 5.06085 5.20270 5.28817 5.57053 5.58948 5.69945 6.10655 6.18337 6.23939 6.82933 6.93102 7.08582 7.10396 8.59839 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.001809 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.420653 B =15470.347391 C =16179.177853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.055 5.055 5 N -0.350 5.350 6 H 0.468 0.532 7 C -0.073 4.073 8 C 0.600 3.400 9 O -0.538 6.538 10 N -0.710 5.710 11 C 0.128 3.872 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.608 5.608 15 C 0.068 3.932 16 C 0.531 3.469 17 O -0.561 6.561 18 C -0.107 4.107 19 S -0.180 6.180 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.237 1.237 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 19.280 14.658 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 N -0.163 5.163 4 N -0.037 5.037 5 N -0.081 5.081 6 H 0.319 0.681 7 C -0.207 4.207 8 C 0.384 3.616 9 O -0.414 6.414 10 N -0.362 5.362 11 C 0.005 3.995 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.341 5.341 15 C -0.073 4.073 16 C 0.318 3.682 17 O -0.439 6.439 18 C -0.258 4.258 19 S 0.047 5.953 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.161 1.161 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.758 20.788 13.082 29.734 hybrid contribution 1.638 -1.846 0.343 2.492 sum -15.120 18.941 13.424 27.705 Atomic orbital electron populations 1.20378 0.83684 1.04687 1.04569 1.22770 0.99680 0.87008 0.99648 1.74971 0.95681 1.26903 1.18761 1.78164 1.15822 0.93232 1.16476 1.45458 1.09157 1.06421 1.47066 0.68107 1.21996 0.85451 0.96160 1.17130 1.16653 0.85774 0.82323 0.76846 1.90850 1.17657 1.82206 1.50652 1.45751 1.09682 1.06486 1.74289 1.21318 0.97021 0.77880 1.03319 1.22043 0.97446 0.94317 1.03734 1.21466 0.86322 0.88423 1.04467 1.47811 1.29682 1.50641 1.06016 1.22131 0.99162 1.02134 0.83908 1.20018 0.84301 0.79880 0.84030 1.90686 1.63407 1.57497 1.32308 1.23299 0.99156 1.02966 1.00350 1.84729 1.35694 1.65843 1.09046 1.22447 1.13021 1.35467 0.96582 0.91887 1.25548 0.93893 0.93421 1.03084 1.70011 1.18072 1.33329 1.33961 0.85884 0.81555 0.79201 0.79839 1.18701 1.18476 1.16127 0.88852 0.89267 0.89296 0.75291 0.89297 0.91873 0.92563 0.88505 0.86556 0.91595 0.91233 0.90985 0.87542 0.86949 0.87291 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 9.93 71.24 0.71 -0.31 16 2 C 0.05 0.87 7.29 42.04 0.31 1.18 16 3 N -0.30 -6.12 12.35 -47.89 -0.59 -6.71 16 4 N -0.06 -0.97 13.35 37.02 0.49 -0.48 16 5 N -0.35 -3.72 6.98 -48.52 -0.34 -4.06 16 6 H 0.47 0.90 8.32 -219.90 -1.83 -0.93 16 7 C -0.07 -1.04 7.17 40.40 0.29 -0.75 16 8 C 0.60 8.81 7.81 86.61 0.68 9.49 16 9 O -0.54 -11.22 14.99 -4.07 -0.06 -11.28 16 10 N -0.71 -6.55 5.55 -466.55 -2.59 -9.14 16 11 C 0.13 1.33 5.67 86.38 0.49 1.82 16 12 C -0.14 -1.46 5.65 30.59 0.17 -1.29 16 13 C 0.12 1.67 5.41 86.38 0.47 2.14 16 14 N -0.61 -11.92 2.87 -846.77 -2.43 -14.35 16 15 C 0.07 0.81 10.24 127.77 1.31 2.12 16 16 C 0.53 16.64 7.69 87.66 0.67 17.31 16 17 O -0.56 -22.19 15.44 -3.03 -0.05 -22.24 16 18 C -0.11 -3.78 4.71 71.24 0.34 -3.44 16 19 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 20 C -0.53 -29.91 10.04 67.95 0.68 -29.23 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 22 C 0.05 2.65 5.50 84.86 0.47 3.12 16 23 N -0.92 -54.72 13.97 21.65 0.30 -54.42 16 24 Si 0.91 44.16 27.74 68.60 1.90 46.07 16 25 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.33 6.61 -2.39 -0.02 1.32 16 31 H 0.41 1.42 7.74 -92.71 -0.72 0.71 16 32 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.12 0.87 8.07 -2.39 -0.02 0.86 16 37 H 0.07 1.31 7.42 -2.38 -0.02 1.29 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.98 6.44 -2.38 -0.02 0.96 16 40 H 0.11 0.54 8.07 -2.39 -0.02 0.52 16 41 H 0.11 3.60 7.40 -2.39 -0.02 3.58 16 42 H 0.11 3.59 8.11 -2.39 -0.02 3.57 16 43 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -82.56 381.36 0.65 -81.91 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -1.52 Total: 2.38 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.58 Total: 2.15 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -5.16 Total: -89.16 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.11 Total: -33.52 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -82.56 0.65 -81.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720529620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.544 kcal (2) G-P(sol) polarization free energy of solvation -82.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds