Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47384 * 2 1 4 4 N 1.46492 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00324 * 274.90031 * 4 3 2 6 6 C 1.52997 * 109.47182 * 263.57895 * 5 4 3 7 7 N 1.46502 * 109.47184 * 179.97438 * 6 5 4 8 8 C 1.34770 * 119.99889 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00581 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99761 * 180.02562 * 8 7 6 11 11 S 1.81004 * 109.47209 * 180.02562 * 10 8 7 12 12 C 1.76191 * 100.00001 * 179.97438 * 11 10 8 13 13 H 1.08000 * 120.00395 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99760 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99982 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00218 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47132 * 89.99826 * 16 14 12 18 18 H 1.48496 * 109.47111 * 209.99805 * 16 14 12 19 19 H 1.48502 * 109.46920 * 329.99881 * 16 14 12 20 20 C 1.34786 * 119.99894 * 94.90524 * 4 3 2 21 21 O 1.21553 * 119.99980 * 4.36841 * 20 4 3 22 22 C 1.47869 * 119.99883 * 184.37100 * 20 4 3 23 23 N 1.34547 * 126.04471 * 173.98236 * 22 20 4 24 24 C 1.30872 * 107.26579 * 180.02562 * 23 22 20 25 25 N 1.34579 * 107.62770 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.74944 * 179.73008 * 25 24 23 27 27 N 1.28853 * 108.50346 * 0.02562 * 25 24 23 28 28 H 1.08993 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47175 * 300.01061 * 1 2 3 30 30 H 1.09006 * 109.46427 * 60.00213 * 1 2 3 31 31 H 1.08995 * 109.46944 * 239.99688 * 2 1 3 32 32 H 1.09006 * 109.46427 * 119.99787 * 2 1 3 33 33 H 1.08997 * 109.47116 * 59.99188 * 3 2 1 34 34 H 1.09001 * 109.46597 * 299.99758 * 3 2 1 35 35 H 1.09002 * 109.46651 * 23.57639 * 5 4 3 36 36 H 1.08994 * 109.47061 * 143.57904 * 5 4 3 37 37 H 1.09005 * 109.46880 * 299.99921 * 6 5 4 38 38 H 1.09003 * 109.47311 * 59.99434 * 6 5 4 39 39 H 0.96999 * 119.99962 * 0.02562 * 7 6 5 40 40 H 1.09002 * 109.46883 * 300.00220 * 10 8 7 41 41 H 1.08994 * 109.46955 * 60.00562 * 10 8 7 42 42 H 0.96999 * 120.00347 * 180.02562 * 15 14 12 43 43 H 1.08004 * 126.18454 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2371 1.3342 1.2650 6 6 4.6317 2.7316 1.7471 7 7 5.3632 2.6234 3.0118 8 6 5.8134 3.7347 3.6270 9 8 5.6125 4.8245 3.1341 10 6 6.5663 3.6233 4.9277 11 16 7.0331 5.2765 5.4982 12 6 7.8727 4.8597 6.9900 13 1 7.9641 3.8255 7.2874 14 6 8.4176 5.8605 7.7826 15 7 9.0453 5.5491 8.8969 16 14 8.2602 7.6492 7.2679 17 1 7.0133 8.2203 7.8375 18 1 9.4296 8.4138 7.7709 19 1 8.2124 7.7356 5.7862 20 6 4.1795 1.5420 -1.1621 21 8 3.5748 1.7117 -2.2028 22 6 5.6549 1.4448 -1.1717 23 7 6.4392 1.4132 -2.2645 24 6 7.6777 1.3233 -1.8513 25 7 7.6578 1.3001 -0.5059 26 1 8.4346 1.2341 0.0714 27 7 6.4326 1.3738 -0.1137 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.6027 0.8577 2.0124 36 1 5.1349 0.7347 1.1148 37 1 5.2661 3.2081 0.9996 38 1 3.7339 3.3312 1.8972 39 1 5.5242 1.7518 3.4059 40 1 5.9318 3.1471 5.6752 41 1 7.4640 3.0236 4.7776 42 1 9.4258 6.2484 9.4510 43 1 8.5568 1.2763 -2.4770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721203830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = 24.398506 kcal Electronic energy + Delta-G solvation = -26883.622182 eV Core-core repulsion = 22899.671444 eV Total energy + Delta-G solvation = -3983.950738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.87422 -40.23093 -39.21358 -36.81734 -34.95911 -33.77724 -33.56947 -32.47822 -31.75356 -30.37699 -28.22770 -27.13753 -25.65660 -24.45167 -23.35205 -23.23601 -21.87349 -20.64962 -19.97800 -18.83293 -17.98882 -17.59852 -16.94248 -16.68414 -16.25124 -16.01854 -15.51546 -15.39687 -15.05972 -14.95309 -14.84443 -14.31677 -14.21747 -13.78536 -13.52796 -13.30871 -12.84451 -12.78667 -12.57835 -12.38320 -12.26884 -12.02164 -11.71061 -11.51088 -11.30476 -11.07738 -11.04674 -11.04273 -10.75854 -10.65803 -10.51995 -10.09837 -9.90114 -9.60510 -9.12727 -9.05479 -8.98373 -8.53942 -6.96265 -6.33022 -4.04956 0.95619 1.73346 2.11330 2.40202 2.76363 2.94581 2.98717 3.27826 3.31333 3.47306 3.55851 3.81954 4.07352 4.29482 4.36996 4.52614 4.57866 4.65082 4.68987 4.77836 4.91241 5.06114 5.08543 5.16650 5.27605 5.31455 5.43209 5.50278 5.56204 5.67671 5.72047 5.73102 5.77734 5.87878 5.93140 5.95790 6.12886 6.34476 6.46151 6.83043 7.49534 7.56653 7.79317 7.90001 8.37132 8.46087 9.13249 10.76124 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002457 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.305692 B =11395.588919 C =12636.238172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.113 3.887 4 N -0.595 5.595 5 C 0.090 3.910 6 C 0.115 3.885 7 N -0.730 5.730 8 C 0.530 3.470 9 O -0.519 6.519 10 C -0.123 4.123 11 S -0.142 6.142 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.236 1.236 20 C 0.616 3.384 21 O -0.506 6.506 22 C 0.147 3.853 23 N -0.463 5.463 24 C 0.200 3.800 25 N -0.397 5.397 26 H 0.454 0.546 27 N -0.266 5.266 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -15.927 -18.960 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C -0.009 4.009 4 N -0.328 5.328 5 C -0.034 4.034 6 C -0.011 4.011 7 N -0.384 5.384 8 C 0.316 3.684 9 O -0.393 6.393 10 C -0.273 4.273 11 S 0.084 5.916 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.160 1.160 20 C 0.399 3.601 21 O -0.377 6.377 22 C -0.133 4.133 23 N -0.187 5.187 24 C -0.098 4.098 25 N -0.119 5.119 26 H 0.301 0.699 27 N -0.108 5.108 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.051 -13.904 -20.032 26.010 hybrid contribution 1.364 -0.953 1.213 2.059 sum -7.687 -14.857 -18.819 25.179 Atomic orbital electron populations 1.21690 0.94772 1.02090 1.02214 1.21896 0.96488 0.96758 1.02645 1.21703 0.77343 0.97555 1.04288 1.47549 1.07041 1.72582 1.05645 1.22104 0.98517 0.97577 0.85179 1.21520 0.96683 0.96746 0.86139 1.45717 1.59113 1.09444 1.24173 1.20267 0.78594 0.83841 0.85686 1.90715 1.56022 1.26777 1.65792 1.23265 1.02491 1.05170 0.96401 1.84838 1.72756 1.04897 1.29099 1.22309 1.40728 0.97800 1.06080 0.89390 1.24717 0.93410 0.99344 0.93848 1.69936 1.35136 1.34078 1.12520 0.86737 0.78695 0.84449 0.81987 1.19174 1.19939 1.15958 1.16396 0.82785 0.77075 0.83811 1.90831 1.67791 1.47601 1.31483 1.23748 0.96312 1.07833 0.85371 1.71305 0.99951 1.18376 1.29085 1.26753 0.98285 1.00996 0.83771 1.45313 1.07459 1.50708 1.08436 0.69914 1.74477 0.90736 1.19692 1.25864 0.92366 0.92386 0.92332 0.91550 0.91660 0.89813 0.88923 0.89395 0.87223 0.91539 0.91701 0.76705 0.88470 0.88562 0.91918 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -0.95 6.26 -26.73 -0.17 -1.12 16 3 C 0.11 0.91 5.46 -4.04 -0.02 0.88 16 4 N -0.59 -5.70 2.49 -174.80 -0.43 -6.14 16 5 C 0.09 0.72 5.12 -4.04 -0.02 0.70 16 6 C 0.11 1.27 5.51 -4.04 -0.02 1.25 16 7 N -0.73 -8.42 5.56 -60.29 -0.33 -8.76 16 8 C 0.53 8.97 7.85 -10.99 -0.09 8.88 16 9 O -0.52 -11.07 15.86 5.55 0.09 -10.98 16 10 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 11 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 12 C -0.52 -14.70 10.04 30.94 0.31 -14.38 16 13 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 14 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 15 N -0.88 -26.15 13.97 55.49 0.78 -25.38 16 16 Si 0.86 21.52 27.74 -169.99 -4.72 16.80 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.24 -5.92 6.74 56.52 0.38 -5.53 16 20 C 0.62 7.76 7.63 -12.31 -0.09 7.67 16 21 O -0.51 -7.90 16.58 5.32 0.09 -7.81 16 22 C 0.15 1.73 7.51 -156.36 -1.17 0.55 16 23 N -0.46 -5.29 11.41 -12.37 -0.14 -5.43 16 24 C 0.20 1.26 13.14 -90.49 -1.19 0.07 16 25 N -0.40 -2.37 6.93 29.56 0.20 -2.16 16 26 H 0.45 1.08 8.96 -190.21 -1.71 -0.63 16 27 N -0.27 -2.44 7.60 32.07 0.24 -2.20 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.09 0.86 7.23 -51.93 -0.38 0.48 16 35 H 0.09 0.52 8.02 -51.93 -0.42 0.10 16 36 H 0.11 0.86 5.31 -51.93 -0.28 0.59 16 37 H 0.07 0.90 7.11 -51.93 -0.37 0.53 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.29 8.47 -40.82 -0.35 2.94 16 40 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 41 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 43 H 0.23 0.27 8.06 -52.48 -0.42 -0.15 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -39.58 380.49 -9.75 -49.33 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.29 Total: -2.16 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.97 Total: 4.66 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.31 Total: -50.06 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.72 Total: 16.80 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.58 -9.75 -49.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721203830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.730 kcal (2) G-P(sol) polarization free energy of solvation -39.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds