Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30214 * 126.78872 * 2 1 4 4 O 1.20923 * 111.64524 * 180.26327 * 3 2 1 5 5 C 1.34064 * 111.55043 * 359.73511 * 4 3 2 6 6 Cl 1.73600 * 126.79770 * 179.97438 * 5 4 3 7 7 C 1.35673 * 106.40810 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01499 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46961 * 90.03145 * 8 7 5 10 10 C 1.50699 * 109.47268 * 179.97438 * 9 8 7 11 11 O 1.21285 * 119.99616 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99846 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.85161 * 336.19663 * 13 12 10 15 15 C 1.53774 * 113.61681 * 107.49921 * 13 12 10 16 16 C 1.53791 * 87.07790 * 89.11919 * 15 13 12 17 17 H 1.09001 * 113.68682 * 270.87041 * 16 15 13 18 18 C 1.53001 * 113.61290 * 139.98683 * 16 15 13 19 19 N 1.46496 * 109.47205 * 87.50343 * 18 16 15 20 20 C 1.36945 * 119.99718 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 C 1.53781 * 113.61613 * 205.00474 * 13 12 10 29 29 H 1.09006 * 109.46998 * 270.18422 * 1 2 3 30 30 H 1.09002 * 109.47059 * 30.18206 * 1 2 3 31 31 H 1.08997 * 109.47575 * 150.17977 * 1 2 3 32 32 H 1.08997 * 109.47030 * 330.02972 * 8 7 5 33 33 H 1.09004 * 109.47231 * 210.02961 * 8 7 5 34 34 H 1.09002 * 109.47108 * 60.00430 * 9 8 7 35 35 H 1.08996 * 109.47311 * 300.00511 * 9 8 7 36 36 H 0.96993 * 120.00347 * 0.02562 * 12 10 9 37 37 H 1.08995 * 113.61727 * 334.57470 * 15 13 12 38 38 H 1.08997 * 113.62284 * 203.66078 * 15 13 12 39 39 H 1.08997 * 109.46922 * 327.49385 * 18 16 15 40 40 H 1.09000 * 109.46483 * 207.50204 * 18 16 15 41 41 H 0.96996 * 120.00499 * 359.97438 * 19 18 16 42 42 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 43 43 H 1.08996 * 113.61658 * 156.33602 * 28 13 12 44 44 H 1.08999 * 113.69080 * 25.43952 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7269 -0.0052 5 6 3.6036 -0.6053 -0.0036 6 17 5.1011 -1.4836 -0.0101 7 6 2.3530 -1.1314 0.0040 8 6 1.9579 -2.5857 0.0081 9 6 1.8314 -3.0757 1.4520 10 6 1.4357 -4.5298 1.4562 11 8 1.2716 -5.1166 0.4075 12 7 1.2653 -5.1784 2.6253 13 6 0.8811 -6.5921 2.6293 14 1 0.3740 -6.8956 1.7134 15 6 2.0186 -7.5384 3.0483 16 6 1.5372 -7.3484 4.4965 17 1 2.0018 -6.5038 5.0052 18 6 1.5701 -8.6332 5.3267 19 7 2.8934 -8.7871 5.9360 20 6 3.1600 -9.8711 6.7294 21 1 2.3945 -10.6121 6.9062 22 6 4.4140 -10.0173 7.3062 23 7 5.3468 -9.1139 7.0911 24 14 4.7774 -11.4954 8.3890 25 1 4.4407 -11.1712 9.7985 26 1 3.9615 -12.6515 7.9385 27 1 6.2189 -11.8385 8.2908 28 6 0.1517 -7.0286 3.9108 29 1 -0.3633 0.0033 1.0277 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8915 -0.5110 32 1 2.7189 -3.1704 -0.5087 33 1 1.0012 -2.7038 -0.5008 34 1 1.0703 -2.4910 1.9687 35 1 2.7880 -2.9575 1.9609 36 1 1.3969 -4.7092 3.4639 37 1 3.0136 -7.1342 2.8624 38 1 1.8983 -8.5565 2.6783 39 1 1.3651 -9.4877 4.6820 40 1 0.8137 -8.5791 6.1097 41 1 3.5808 -8.1214 5.7775 42 1 6.2230 -9.2159 7.4946 43 1 -0.4790 -7.9074 3.7765 44 1 -0.3610 -6.2139 4.4221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725369275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = 20.443087 kcal Electronic energy + Delta-G solvation = -26180.567280 eV Core-core repulsion = 22162.108564 eV Total energy + Delta-G solvation = -4018.458715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.15761 -41.25109 -39.55341 -38.29612 -36.88917 -36.31211 -34.43738 -34.12481 -32.78979 -31.60521 -29.71080 -28.57121 -26.59542 -26.55737 -25.06902 -23.05952 -22.64743 -22.45096 -21.41435 -20.26094 -19.06344 -19.00153 -18.78844 -18.06165 -17.00150 -16.81658 -16.67126 -16.16180 -15.80982 -15.71314 -15.15052 -15.07474 -14.73974 -14.43910 -14.27516 -14.08231 -13.94801 -13.66183 -13.64004 -13.51827 -13.32749 -13.21521 -13.10531 -12.88165 -12.85357 -12.67680 -12.22876 -12.17709 -11.92040 -11.82626 -11.71622 -11.32354 -11.12127 -11.06429 -10.88043 -10.83081 -10.29025 -9.97701 -8.97243 -7.95067 -5.23089 0.00628 0.08052 0.97132 1.47055 1.48687 1.57151 1.65655 2.19050 2.52415 2.56229 3.00182 3.38076 3.46049 3.62891 3.63335 3.71933 3.73276 3.96435 3.98639 4.02534 4.23364 4.28569 4.35341 4.53200 4.61595 4.67997 4.70237 4.78499 4.80550 4.88298 4.94834 4.96386 4.99587 5.01714 5.04484 5.18802 5.24790 5.30970 5.40554 5.50224 5.72927 6.28096 6.59936 6.95567 7.29005 7.33962 8.12416 8.34418 9.28539 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.001929 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.866055 B =14514.495204 C =15709.848169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 N -0.373 5.373 4 O 0.094 5.906 5 C -0.004 4.004 6 Cl 0.057 6.943 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.130 4.130 10 C 0.517 3.483 11 O -0.580 6.580 12 N -0.703 5.703 13 C 0.128 3.872 14 H 0.095 0.905 15 C -0.144 4.144 16 C -0.112 4.112 17 H 0.086 0.914 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.245 4.245 21 H 0.075 0.925 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.286 1.286 26 H -0.270 1.270 27 H -0.296 1.296 28 C -0.117 4.117 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.414 0.586 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.103 0.897 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 20.330 -15.788 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 N -0.082 5.082 4 O 0.030 5.970 5 C -0.094 4.094 6 Cl 0.085 6.915 7 C -0.168 4.168 8 C -0.062 4.062 9 C -0.169 4.169 10 C 0.305 3.695 11 O -0.460 6.460 12 N -0.354 5.354 13 C 0.022 3.978 14 H 0.113 0.887 15 C -0.183 4.183 16 C -0.130 4.130 17 H 0.104 0.896 18 C 0.032 3.968 19 N -0.388 5.388 20 C -0.377 4.377 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.213 1.213 26 H -0.195 1.195 27 H -0.223 1.223 28 C -0.155 4.155 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.122 0.878 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.869 20.982 -16.450 29.184 hybrid contribution 1.492 -1.289 1.013 2.217 sum -10.377 19.694 -15.437 27.089 Atomic orbital electron populations 1.20443 0.82916 1.05241 1.05218 1.23889 1.00513 0.87197 1.00397 1.73974 0.88822 1.24023 1.21385 1.84901 1.22279 1.21237 1.68624 1.24856 0.91787 0.84808 1.07943 1.98486 1.27895 1.68506 1.96592 1.20926 0.89508 0.98460 1.07929 1.19646 1.04130 0.85978 0.96492 1.21637 1.05532 0.91043 0.98711 1.21032 0.75557 0.89814 0.83079 1.90702 1.52525 1.70058 1.32708 1.45676 1.69716 1.10768 1.09247 1.21718 0.95796 0.80825 0.99468 0.88662 1.23419 0.98552 1.00080 0.96266 1.22691 0.98311 0.97412 0.94624 0.89557 1.20843 0.86565 0.95343 0.94007 1.42585 1.11359 1.26815 1.57995 1.19662 0.96569 1.00740 1.20694 0.90741 1.25575 0.96431 1.01702 1.03334 1.69815 1.04407 1.37620 1.50267 0.85143 0.76615 0.79347 0.78693 1.21275 1.19488 1.22262 1.23216 0.95328 1.02658 0.94302 0.88016 0.89752 0.88007 0.90285 0.88287 0.85712 0.87644 0.74914 0.93073 0.89980 0.96339 0.96098 0.79542 0.94055 0.87838 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 71.23 0.74 0.12 16 2 C 0.04 0.57 7.32 43.54 0.32 0.89 16 3 N -0.37 -7.24 12.07 -49.43 -0.60 -7.84 16 4 O 0.09 1.82 11.20 71.41 0.80 2.62 16 5 C 0.00 -0.07 8.12 67.23 0.55 0.48 16 6 Cl 0.06 0.88 29.23 -2.72 -0.08 0.80 16 7 C -0.16 -2.40 5.58 -19.71 -0.11 -2.51 16 8 C -0.02 -0.33 4.90 29.85 0.15 -0.19 16 9 C -0.13 -1.55 5.68 29.85 0.17 -1.38 16 10 C 0.52 9.90 7.83 87.66 0.69 10.59 16 11 O -0.58 -15.80 15.58 -3.05 -0.05 -15.85 16 12 N -0.70 -12.53 5.26 -440.04 -2.32 -14.85 16 13 C 0.13 2.77 4.32 45.52 0.20 2.97 16 14 H 0.10 2.23 7.47 -2.38 -0.02 2.21 16 15 C -0.14 -4.06 7.43 31.12 0.23 -3.82 16 16 C -0.11 -3.17 3.63 -10.26 -0.04 -3.21 16 17 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 18 C 0.16 6.07 6.10 86.38 0.53 6.59 16 19 N -0.75 -37.64 5.60 -343.47 -1.92 -39.56 16 20 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 23 N -0.97 -59.54 13.06 21.65 0.28 -59.25 16 24 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 28 C -0.12 -2.32 7.39 31.12 0.23 -2.09 16 29 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.50 7.65 -2.39 -0.02 0.48 16 32 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.10 1.24 7.60 -2.39 -0.02 1.23 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.41 5.48 8.70 -92.71 -0.81 4.67 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.42 7.90 -2.39 -0.02 2.40 16 39 H 0.02 0.72 7.84 -2.39 -0.02 0.70 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.37 20.04 7.67 -92.71 -0.71 19.33 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.10 1.93 8.10 -2.39 -0.02 1.91 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -72.61 389.36 2.62 -69.99 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.48 Total: 24.21 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 4.95 Total: -8.49 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.55 Total: -121.51 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.75 Total: -13.23 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 17 Polarization: 0.88 SS G_CDS: -0.08 Total: 0.80 kcal Total: -72.61 2.62 -69.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725369275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.435 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds