Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30218 * 126.78852 * 2 1 4 4 O 1.20910 * 111.64761 * 180.02562 * 3 2 1 5 5 C 1.34068 * 111.55386 * 359.76600 * 4 3 2 6 6 Cl 1.73598 * 126.79927 * 180.25920 * 5 4 3 7 7 C 1.35675 * 106.40411 * 0.37567 * 5 4 3 8 8 C 1.50701 * 128.01541 * 179.91090 * 7 5 4 9 9 C 1.50701 * 109.47356 * 269.68327 * 8 7 5 10 10 O 1.21278 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99870 * 179.97438 * 9 8 7 12 12 C 1.47292 * 125.79528 * 0.02562 * 11 9 8 13 13 C 1.54328 * 107.30566 * 178.92089 * 12 11 9 14 14 C 1.55154 * 102.94154 * 337.81859 * 13 12 11 15 15 H 1.08995 * 111.03671 * 277.41069 * 14 13 12 16 16 C 1.53002 * 111.00297 * 153.57406 * 14 13 12 17 17 N 1.46504 * 109.47133 * 72.79978 * 16 14 13 18 18 C 1.46502 * 119.99891 * 89.99870 * 17 16 14 19 19 C 1.36934 * 120.00158 * 270.00300 * 17 16 14 20 20 H 1.08002 * 119.99933 * 141.78118 * 19 17 16 21 21 C 1.38809 * 120.00291 * 321.77956 * 19 17 16 22 22 N 1.31612 * 120.00333 * 157.37283 * 21 19 17 23 23 Si 1.86803 * 119.99661 * 337.37695 * 21 19 17 24 24 H 1.48501 * 109.47077 * 95.66889 * 23 21 19 25 25 H 1.48504 * 109.46903 * 215.66495 * 23 21 19 26 26 H 1.48497 * 109.47106 * 335.66425 * 23 21 19 27 27 C 1.47428 * 125.64648 * 179.97438 * 11 9 8 28 28 H 1.09000 * 109.46599 * 269.97206 * 1 2 3 29 29 H 1.08998 * 109.47425 * 29.97140 * 1 2 3 30 30 H 1.08994 * 109.46725 * 149.97519 * 1 2 3 31 31 H 1.08998 * 109.47036 * 149.67947 * 8 7 5 32 32 H 1.08999 * 109.46841 * 29.68828 * 8 7 5 33 33 H 1.09004 * 109.85856 * 59.50160 * 12 11 9 34 34 H 1.08998 * 110.00230 * 298.43299 * 12 11 9 35 35 H 1.08998 * 110.71728 * 219.45190 * 13 12 11 36 36 H 1.08997 * 110.71306 * 96.18364 * 13 12 11 37 37 H 1.08996 * 109.47511 * 192.80195 * 16 14 13 38 38 H 1.09004 * 109.46991 * 312.80361 * 16 14 13 39 39 H 1.08999 * 109.47001 * 85.68093 * 18 17 16 40 40 H 1.08996 * 109.47401 * 205.68258 * 18 17 16 41 41 H 1.09003 * 109.47283 * 325.68377 * 18 17 16 42 42 H 0.96999 * 120.00454 * 179.97438 * 22 21 19 43 43 H 1.08993 * 110.36628 * 85.26615 * 27 11 9 44 44 H 1.08997 * 110.36377 * 323.04645 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0429 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6037 -0.6052 0.0042 6 17 5.1013 -1.4833 0.0116 7 6 2.3532 -1.1314 -0.0006 8 6 1.9581 -2.5857 -0.0002 9 6 1.8252 -3.0706 -1.4209 10 8 2.0306 -2.3100 -2.3429 11 7 1.4782 -4.3495 -1.6667 12 6 1.1998 -5.3774 -0.6492 13 6 0.8193 -6.6726 -1.3971 14 6 0.3543 -6.1502 -2.7821 15 1 -0.6832 -5.8178 -2.7467 16 6 0.5495 -7.2148 -3.8635 17 7 -0.4513 -8.2714 -3.6949 18 6 -1.7454 -8.1696 -4.3741 19 6 -0.1771 -9.3540 -2.9025 20 1 -0.9517 -9.7779 -2.2806 21 6 1.0962 -9.9066 -2.8986 22 7 1.5014 -10.6187 -1.8686 23 14 2.2347 -9.6394 -4.3553 24 1 3.1330 -8.4901 -4.0772 25 1 3.0488 -10.8614 -4.5779 26 1 1.4275 -9.3546 -5.5687 27 6 1.3125 -4.9534 -3.0013 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3632 -0.8897 -0.5142 31 1 1.0045 -2.7030 0.5145 32 1 2.7221 -3.1695 0.5131 33 1 0.3716 -5.0577 -0.0167 34 1 2.0870 -5.5483 -0.0395 35 1 0.0060 -7.1880 -0.8864 36 1 1.6856 -7.3257 -1.5022 37 1 0.4346 -6.7591 -4.8470 38 1 1.5481 -7.6429 -3.7759 39 1 -1.6586 -8.5718 -5.3834 40 1 -2.4924 -8.7376 -3.8196 41 1 -2.0480 -7.1237 -4.4245 42 1 2.3911 -11.0052 -1.8660 43 1 2.2726 -5.3016 -3.3820 44 1 0.8700 -4.2344 -3.6907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732078200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 52.859277 kcal Electronic energy + Delta-G solvation = -27810.572536 eV Core-core repulsion = 23793.519492 eV Total energy + Delta-G solvation = -4017.053044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -45.31616 -40.00015 -37.81256 -37.46195 -35.68482 -35.45267 -32.78845 -31.98592 -31.34326 -29.42290 -29.12090 -28.73818 -26.45120 -25.42839 -23.21052 -22.15089 -21.74143 -21.22605 -19.98356 -19.24265 -18.14573 -17.93060 -17.06659 -16.96451 -16.05032 -15.85764 -15.26393 -14.98190 -14.50660 -14.07753 -13.89270 -13.68964 -13.47544 -13.37502 -13.32583 -12.98828 -12.83479 -12.77714 -12.58171 -12.41722 -12.33218 -12.13779 -12.07693 -11.81360 -11.50060 -11.18715 -11.02693 -10.83720 -10.55747 -10.38538 -10.33103 -10.21406 -9.91027 -9.79537 -9.59140 -9.44123 -8.58162 -8.54808 -6.87444 -6.07603 -3.48334 0.77022 0.95007 1.75717 2.59465 3.02944 3.24059 3.33318 3.42353 3.47464 3.73057 4.21483 4.43963 4.46032 4.51147 4.64546 4.85616 4.99228 5.07663 5.15601 5.17278 5.23213 5.31353 5.36104 5.38372 5.43035 5.51651 5.66505 5.75977 5.81122 5.91865 6.13610 6.20141 6.24309 6.30790 6.42962 6.50669 6.64437 6.67502 6.82186 6.93302 7.57805 7.78545 7.98139 8.14536 8.30258 8.91447 9.63977 10.05971 11.07688 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002772 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.116278 B =10097.926209 C =10831.863950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.348 5.348 4 O 0.109 5.891 5 C 0.013 3.987 6 Cl 0.050 6.950 7 C -0.148 4.148 8 C -0.064 4.064 9 C 0.528 3.472 10 O -0.540 6.540 11 N -0.613 5.613 12 C 0.092 3.908 13 C -0.104 4.104 14 C -0.112 4.112 15 H 0.077 0.923 16 C 0.148 3.852 17 N -0.610 5.610 18 C 0.124 3.876 19 C -0.266 4.266 20 H 0.078 0.922 21 C 0.040 3.960 22 N -0.897 5.897 23 Si 0.869 3.131 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.108 3.892 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.006 0.994 40 H 0.045 0.955 41 H 0.026 0.974 42 H 0.263 0.737 43 H 0.065 0.935 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 17.762 6.778 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.055 5.055 4 O 0.043 5.957 5 C -0.077 4.077 6 Cl 0.078 6.922 7 C -0.153 4.153 8 C -0.104 4.104 9 C 0.316 3.684 10 O -0.417 6.417 11 N -0.346 5.346 12 C -0.030 4.030 13 C -0.142 4.142 14 C -0.133 4.133 15 H 0.095 0.905 16 C 0.022 3.978 17 N -0.334 5.334 18 C -0.021 4.021 19 C -0.394 4.394 20 H 0.096 0.904 21 C -0.160 4.160 22 N -0.538 5.538 23 Si 0.700 3.300 24 H -0.213 1.213 25 H -0.229 1.229 26 H -0.195 1.195 27 C -0.015 4.015 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.026 19.345 6.369 20.393 hybrid contribution 1.059 -0.912 -0.750 1.586 sum 2.085 18.434 5.619 19.383 Atomic orbital electron populations 1.20231 0.85185 1.04483 1.03593 1.23247 0.99098 0.87675 1.01355 1.73911 0.88481 1.22857 1.20273 1.84896 1.22145 1.20524 1.68131 1.24484 0.90913 0.84962 1.07356 1.98462 1.28177 1.68917 1.96640 1.20121 0.90120 0.96829 1.08255 1.19960 1.05051 0.89403 0.96005 1.19904 0.77221 0.80636 0.90659 1.90719 1.50542 1.54255 1.46199 1.48627 1.67600 1.09232 1.09185 1.22370 1.00207 0.89117 0.91308 1.22489 1.03121 0.93797 0.94752 1.23002 0.98164 0.94281 0.97884 0.90502 1.21083 0.94099 0.88334 0.94325 1.44025 1.13711 1.20225 1.55454 1.21086 0.88256 0.97717 0.95064 1.18736 0.97533 1.06070 1.17110 0.90426 1.25427 0.97630 0.96461 0.96527 1.69860 1.18880 1.36978 1.28059 0.87064 0.80767 0.76093 0.86114 1.21325 1.22895 1.19486 1.22361 0.99936 0.95074 0.84110 0.89642 0.90009 0.89698 0.86832 0.87150 0.91628 0.91553 0.89145 0.89998 0.94066 0.92543 0.97559 0.93631 0.95501 0.92716 0.91627 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.39 36.01 0.37 -0.27 16 2 C 0.05 0.52 7.32 -82.12 -0.60 -0.08 16 3 N -0.35 -4.51 12.07 33.44 0.40 -4.11 16 4 O 0.11 1.38 11.20 17.11 0.19 1.57 16 5 C 0.01 0.15 8.12 29.82 0.24 0.40 16 6 Cl 0.05 0.51 29.23 -51.86 -1.52 -1.01 16 7 C -0.15 -1.71 4.82 -104.38 -0.50 -2.21 16 8 C -0.06 -0.65 5.30 -29.03 -0.15 -0.80 16 9 C 0.53 7.37 7.85 -10.99 -0.09 7.28 16 10 O -0.54 -9.50 16.29 5.56 0.09 -9.41 16 11 N -0.61 -8.59 3.34 -170.33 -0.57 -9.16 16 12 C 0.09 1.16 6.51 -2.91 -0.02 1.14 16 13 C -0.10 -1.71 5.73 -24.90 -0.14 -1.85 16 14 C -0.11 -1.84 3.25 -88.49 -0.29 -2.13 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.15 2.91 4.05 -4.04 -0.02 2.90 16 17 N -0.61 -13.38 2.45 -181.11 -0.44 -13.83 16 18 C 0.12 2.32 10.70 59.85 0.64 2.96 16 19 C -0.27 -6.80 9.21 -15.06 -0.14 -6.94 16 20 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 21 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 22 N -0.90 -25.28 13.97 55.49 0.78 -24.51 16 23 Si 0.87 21.08 25.09 -169.99 -4.26 16.81 16 24 H -0.29 -6.67 6.68 56.52 0.38 -6.30 16 25 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.11 1.67 6.37 -2.55 -0.02 1.65 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.08 1.58 7.91 -51.93 -0.41 1.17 16 37 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.06 1.23 3.21 -51.93 -0.17 1.07 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.04 0.83 8.00 -51.93 -0.42 0.42 16 41 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.07 1.06 8.03 -51.93 -0.42 0.65 16 44 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -30.87 378.61 -6.90 -37.78 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.48 Total: -2.88 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.80 Total: 3.03 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.17 Total: -51.60 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.28 Total: -7.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.26 Total: 16.81 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -1.52 Total: -1.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.87 -6.90 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732078200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.636 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds