Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30218 * 126.78852 * 2 1 4 4 O 1.20910 * 111.64761 * 180.02562 * 3 2 1 5 5 C 1.34068 * 111.55386 * 359.76600 * 4 3 2 6 6 Cl 1.73598 * 126.79927 * 180.25920 * 5 4 3 7 7 C 1.35675 * 106.40411 * 0.37567 * 5 4 3 8 8 C 1.50701 * 128.01541 * 179.91090 * 7 5 4 9 9 C 1.50701 * 109.47356 * 269.68327 * 8 7 5 10 10 O 1.21278 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99870 * 179.97438 * 9 8 7 12 12 C 1.47292 * 125.79528 * 0.02562 * 11 9 8 13 13 C 1.54328 * 107.30566 * 178.92089 * 12 11 9 14 14 C 1.55154 * 102.94154 * 337.81859 * 13 12 11 15 15 H 1.08995 * 111.03671 * 277.41069 * 14 13 12 16 16 C 1.53002 * 111.00297 * 153.57406 * 14 13 12 17 17 N 1.46504 * 109.47133 * 72.79978 * 16 14 13 18 18 C 1.46502 * 119.99891 * 89.99870 * 17 16 14 19 19 C 1.36934 * 120.00158 * 270.00300 * 17 16 14 20 20 H 1.08002 * 119.99933 * 141.78118 * 19 17 16 21 21 C 1.38809 * 120.00291 * 321.77956 * 19 17 16 22 22 N 1.31612 * 120.00333 * 157.37283 * 21 19 17 23 23 Si 1.86803 * 119.99661 * 337.37695 * 21 19 17 24 24 H 1.48501 * 109.47077 * 95.66889 * 23 21 19 25 25 H 1.48504 * 109.46903 * 215.66495 * 23 21 19 26 26 H 1.48497 * 109.47106 * 335.66425 * 23 21 19 27 27 C 1.47428 * 125.64648 * 179.97438 * 11 9 8 28 28 H 1.09000 * 109.46599 * 269.97206 * 1 2 3 29 29 H 1.08998 * 109.47425 * 29.97140 * 1 2 3 30 30 H 1.08994 * 109.46725 * 149.97519 * 1 2 3 31 31 H 1.08998 * 109.47036 * 149.67947 * 8 7 5 32 32 H 1.08999 * 109.46841 * 29.68828 * 8 7 5 33 33 H 1.09004 * 109.85856 * 59.50160 * 12 11 9 34 34 H 1.08998 * 110.00230 * 298.43299 * 12 11 9 35 35 H 1.08998 * 110.71728 * 219.45190 * 13 12 11 36 36 H 1.08997 * 110.71306 * 96.18364 * 13 12 11 37 37 H 1.08996 * 109.47511 * 192.80195 * 16 14 13 38 38 H 1.09004 * 109.46991 * 312.80361 * 16 14 13 39 39 H 1.08999 * 109.47001 * 85.68093 * 18 17 16 40 40 H 1.08996 * 109.47401 * 205.68258 * 18 17 16 41 41 H 1.09003 * 109.47283 * 325.68377 * 18 17 16 42 42 H 0.96999 * 120.00454 * 179.97438 * 22 21 19 43 43 H 1.08993 * 110.36628 * 85.26615 * 27 11 9 44 44 H 1.08997 * 110.36377 * 323.04645 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0429 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6037 -0.6052 0.0042 6 17 5.1013 -1.4833 0.0116 7 6 2.3532 -1.1314 -0.0006 8 6 1.9581 -2.5857 -0.0002 9 6 1.8252 -3.0706 -1.4209 10 8 2.0306 -2.3100 -2.3429 11 7 1.4782 -4.3495 -1.6667 12 6 1.1998 -5.3774 -0.6492 13 6 0.8193 -6.6726 -1.3971 14 6 0.3543 -6.1502 -2.7821 15 1 -0.6832 -5.8178 -2.7467 16 6 0.5495 -7.2148 -3.8635 17 7 -0.4513 -8.2714 -3.6949 18 6 -1.7454 -8.1696 -4.3741 19 6 -0.1771 -9.3540 -2.9025 20 1 -0.9517 -9.7779 -2.2806 21 6 1.0962 -9.9066 -2.8986 22 7 1.5014 -10.6187 -1.8686 23 14 2.2347 -9.6394 -4.3553 24 1 3.1330 -8.4901 -4.0772 25 1 3.0488 -10.8614 -4.5779 26 1 1.4275 -9.3546 -5.5687 27 6 1.3125 -4.9534 -3.0013 28 1 -0.3632 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3632 -0.8897 -0.5142 31 1 1.0045 -2.7030 0.5145 32 1 2.7221 -3.1695 0.5131 33 1 0.3716 -5.0577 -0.0167 34 1 2.0870 -5.5483 -0.0395 35 1 0.0060 -7.1880 -0.8864 36 1 1.6856 -7.3257 -1.5022 37 1 0.4346 -6.7591 -4.8470 38 1 1.5481 -7.6429 -3.7759 39 1 -1.6586 -8.5718 -5.3834 40 1 -2.4924 -8.7376 -3.8196 41 1 -2.0480 -7.1237 -4.4245 42 1 2.3911 -11.0052 -1.8660 43 1 2.2726 -5.3016 -3.3820 44 1 0.8700 -4.2344 -3.6907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732078200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = 34.637855 kcal Electronic energy + Delta-G solvation = -27811.362676 eV Core-core repulsion = 23793.519492 eV Total energy + Delta-G solvation = -4017.843184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -46.17878 -41.13690 -39.08982 -38.31679 -37.17137 -36.39866 -33.90125 -33.57702 -32.77519 -30.45377 -30.14305 -29.57571 -28.07458 -26.98980 -24.38519 -23.14000 -22.91103 -22.56999 -21.38696 -20.29917 -19.05335 -18.80407 -18.77414 -18.10717 -17.21900 -17.16055 -16.75367 -16.02725 -15.75102 -15.59064 -15.19080 -14.89224 -14.62978 -14.37346 -14.28120 -14.15405 -14.05334 -13.79252 -13.67592 -13.61121 -13.48725 -13.28321 -13.20993 -13.11565 -12.88959 -12.66228 -12.47020 -12.17251 -12.00585 -11.90949 -11.69950 -11.56709 -11.28571 -11.21547 -10.92125 -10.57959 -10.33708 -9.67511 -8.69254 -8.14248 -5.50158 -0.07982 0.08185 0.91791 1.30158 1.43688 1.51597 1.55375 1.98430 2.44735 2.46880 2.95328 3.08568 3.36161 3.41986 3.55252 3.71759 3.78158 3.83633 3.97793 4.10963 4.35680 4.37341 4.42611 4.51851 4.56129 4.59712 4.64832 4.67091 4.72609 4.76172 4.79895 4.85053 4.96755 5.09562 5.12856 5.16828 5.18461 5.22618 5.43498 5.55234 6.00608 6.24121 6.50670 6.92368 7.04614 7.07721 7.69241 8.12900 9.04885 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002772 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.116278 B =10097.926209 C =10831.863950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.044 3.956 3 N -0.372 5.372 4 O 0.094 5.906 5 C 0.006 3.994 6 Cl 0.059 6.941 7 C -0.156 4.156 8 C -0.058 4.058 9 C 0.529 3.471 10 O -0.580 6.580 11 N -0.613 5.613 12 C 0.102 3.898 13 C -0.102 4.102 14 C -0.101 4.101 15 H 0.088 0.912 16 C 0.143 3.857 17 N -0.623 5.623 18 C 0.122 3.878 19 C -0.245 4.245 20 H 0.047 0.953 21 C -0.002 4.002 22 N -0.938 5.938 23 Si 0.919 3.081 24 H -0.276 1.276 25 H -0.313 1.313 26 H -0.267 1.267 27 C 0.113 3.887 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.009 0.991 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.006 19.274 7.148 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 N -0.082 5.082 4 O 0.031 5.969 5 C -0.085 4.085 6 Cl 0.088 6.912 7 C -0.161 4.161 8 C -0.097 4.097 9 C 0.319 3.681 10 O -0.460 6.460 11 N -0.346 5.346 12 C -0.020 4.020 13 C -0.141 4.141 14 C -0.122 4.122 15 H 0.106 0.894 16 C 0.017 3.983 17 N -0.348 5.348 18 C -0.022 4.022 19 C -0.375 4.375 20 H 0.065 0.935 21 C -0.199 4.199 22 N -0.581 5.581 23 Si 0.750 3.250 24 H -0.203 1.203 25 H -0.242 1.242 26 H -0.192 1.192 27 C -0.010 4.010 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.161 20.879 6.731 21.937 hybrid contribution 1.254 -1.383 -0.879 2.063 sum 1.414 19.496 5.852 20.404 Atomic orbital electron populations 1.20399 0.83027 1.04785 1.05329 1.23826 1.00507 0.87290 0.99893 1.73907 0.88762 1.23820 1.21720 1.84864 1.22292 1.21033 1.68687 1.24762 0.91677 0.84911 1.07103 1.98463 1.27667 1.68541 1.96571 1.20369 0.89931 0.97577 1.08239 1.20063 1.07556 0.88484 0.93622 1.20492 0.75946 0.79880 0.91791 1.90710 1.52269 1.55182 1.47843 1.48651 1.67575 1.09632 1.08733 1.22363 1.02352 0.86640 0.90661 1.22319 1.01074 0.95233 0.95434 1.22780 0.99031 0.93740 0.96688 0.89377 1.21131 0.92266 0.88466 0.96414 1.44172 1.15188 1.19945 1.55453 1.21188 0.86563 0.99796 0.94666 1.18566 0.96374 1.06412 1.16147 0.93540 1.25813 0.99037 0.97039 0.98021 1.69953 1.19327 1.39204 1.29666 0.86246 0.79467 0.75599 0.83718 1.20322 1.24222 1.19185 1.22167 0.98984 0.94627 0.85258 0.87088 0.89933 0.89120 0.83367 0.85209 0.88209 0.89757 0.90718 0.93492 0.92235 0.94845 0.97242 0.93778 0.92367 0.93014 0.92784 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.39 71.24 0.74 -0.33 16 2 C 0.04 0.92 7.32 43.55 0.32 1.24 16 3 N -0.37 -9.29 12.07 -49.43 -0.60 -9.89 16 4 O 0.09 2.33 11.20 71.39 0.80 3.13 16 5 C 0.01 0.12 8.12 67.23 0.55 0.67 16 6 Cl 0.06 1.13 29.23 -2.72 -0.08 1.05 16 7 C -0.16 -3.24 4.82 -19.71 -0.10 -3.34 16 8 C -0.06 -0.96 5.30 29.10 0.15 -0.81 16 9 C 0.53 13.26 7.85 87.66 0.69 13.95 16 10 O -0.58 -19.37 16.29 -3.02 -0.05 -19.42 16 11 N -0.61 -15.40 3.34 -811.19 -2.71 -18.10 16 12 C 0.10 2.22 6.51 86.68 0.56 2.79 16 13 C -0.10 -3.25 5.73 31.78 0.18 -3.07 16 14 C -0.10 -3.14 3.25 -9.42 -0.03 -3.17 16 15 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 16 C 0.14 5.40 4.05 86.38 0.35 5.75 16 17 N -0.62 -26.59 2.45 -726.92 -1.78 -28.37 16 18 C 0.12 4.30 10.70 127.77 1.37 5.67 16 19 C -0.25 -12.61 9.21 84.03 0.77 -11.84 16 20 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 21 C 0.00 -0.10 5.29 84.86 0.45 0.35 16 22 N -0.94 -54.12 13.97 21.65 0.30 -53.82 16 23 Si 0.92 43.86 25.09 68.60 1.72 45.58 16 24 H -0.28 -12.58 6.68 99.48 0.66 -11.91 16 25 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.11 3.27 6.37 86.84 0.55 3.82 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 1.82 7.91 -2.39 -0.02 1.80 16 37 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 38 H 0.03 1.43 3.21 -2.38 -0.01 1.43 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 41 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.05 1.69 8.03 -2.39 -0.02 1.67 16 44 H 0.08 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -68.26 378.61 5.14 -63.12 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.97 Total: 5.04 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.56 Total: 11.69 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.78 Total: -110.18 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.75 Total: -16.29 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.72 Total: 45.58 kcal Atomic # 17 Polarization: 1.13 SS G_CDS: -0.08 Total: 1.05 kcal Total: -68.26 5.14 -63.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732078200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.756 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds