Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31239 * 124.05747 * 2 1 4 4 N 1.27331 * 120.03342 * 180.36830 * 3 2 1 5 5 S 1.56630 * 109.74683 * 359.69423 * 4 3 2 6 6 C 1.38247 * 124.05224 * 179.81537 * 2 1 3 7 7 C 1.47171 * 128.47766 * 359.97438 * 6 2 1 8 8 O 1.21622 * 119.99952 * 359.69807 * 7 6 2 9 9 N 1.34778 * 120.00147 * 179.70420 * 7 6 2 10 10 C 1.46499 * 120.00004 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47210 * 34.99777 * 10 9 7 12 12 C 1.53000 * 109.46933 * 274.99442 * 10 9 7 13 13 C 1.53004 * 109.46956 * 155.00083 * 10 9 7 14 14 C 1.53008 * 109.46689 * 294.99729 * 13 10 9 15 15 N 1.46902 * 109.46622 * 180.02562 * 14 13 10 16 16 C 1.46906 * 110.99573 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46990 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99883 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99812 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99796 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99739 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00310 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47545 * 89.99653 * 24 22 20 26 26 H 1.48498 * 109.47176 * 210.00238 * 24 22 20 27 27 H 1.48507 * 109.47046 * 329.99813 * 24 22 20 28 28 H 1.09004 * 109.46820 * 270.18628 * 1 2 3 29 29 H 1.09000 * 109.47031 * 30.18484 * 1 2 3 30 30 H 1.08999 * 109.47407 * 150.18867 * 1 2 3 31 31 H 0.97003 * 119.99664 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.47447 * 300.00190 * 12 10 9 33 33 H 1.09004 * 109.47093 * 60.00613 * 12 10 9 34 34 H 1.09000 * 109.47134 * 179.97438 * 12 10 9 35 35 H 1.09006 * 109.46807 * 175.00088 * 13 10 9 36 36 H 1.08995 * 109.47458 * 54.99705 * 13 10 9 37 37 H 1.08990 * 109.46924 * 60.00331 * 14 13 10 38 38 H 1.09004 * 109.46978 * 300.00208 * 14 13 10 39 39 H 1.00896 * 111.00219 * 303.95583 * 15 14 13 40 40 H 1.09002 * 109.46991 * 299.99841 * 16 15 14 41 41 H 1.09000 * 109.47202 * 60.00133 * 16 15 14 42 42 H 0.97000 * 120.00083 * 0.02562 * 19 17 16 43 43 H 0.96998 * 119.99752 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9979 -0.0071 5 16 3.9366 -0.5097 -0.0069 6 6 2.2812 -1.1454 0.0037 7 6 1.8393 -2.5492 0.0087 8 8 0.6521 -2.8131 0.0156 9 7 2.7504 -3.5425 0.0058 10 6 2.3105 -4.9399 0.0114 11 1 1.3952 -5.0350 -0.5726 12 6 2.0457 -5.3854 1.4509 13 6 3.4011 -5.8202 -0.6024 14 6 3.5785 -5.4576 -2.0783 15 7 4.6251 -6.3032 -2.6678 16 6 4.8230 -5.9828 -4.0877 17 6 5.9011 -6.8687 -4.6570 18 8 6.4501 -7.6868 -3.9496 19 7 6.2544 -6.7527 -5.9524 20 6 7.2355 -7.5583 -6.4702 21 1 7.7255 -8.2855 -5.8399 22 6 7.6001 -7.4382 -7.8057 23 7 8.5409 -8.2100 -8.3019 24 14 6.7540 -6.1788 -8.8953 25 1 7.4958 -4.8938 -8.8347 26 1 6.7312 -6.6717 -10.2959 27 1 5.3622 -5.9696 -8.4214 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3634 -0.8916 -0.5109 31 1 3.6973 -3.3320 0.0000 32 1 2.9611 -5.2903 2.0350 33 1 1.2688 -4.7583 1.8883 34 1 1.7180 -6.4250 1.4551 35 1 3.1126 -6.8680 -0.5178 36 1 4.3399 -5.6579 -0.0730 37 1 3.8669 -4.4099 -2.1628 38 1 2.6396 -5.6199 -2.6077 39 1 5.4895 -6.2198 -2.1540 40 1 3.8926 -6.1487 -4.6307 41 1 5.1203 -4.9388 -4.1866 42 1 5.8150 -6.0987 -6.5182 43 1 8.7957 -8.1259 -9.2340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732671366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = -1.192939 kcal Electronic energy + Delta-G solvation = -26210.553542 eV Core-core repulsion = 22225.493076 eV Total energy + Delta-G solvation = -3985.060466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47187 -40.20349 -38.55750 -37.20103 -35.23184 -33.93208 -33.78419 -32.25743 -31.68644 -29.58262 -28.68855 -27.41885 -26.46489 -24.20319 -23.48230 -22.26797 -21.25288 -20.93460 -19.41991 -19.02834 -18.40822 -17.92671 -16.80730 -16.58498 -16.23034 -15.70558 -15.38772 -15.01890 -14.96631 -14.58165 -14.49475 -14.02816 -13.96658 -13.56643 -13.54704 -13.45827 -13.05404 -12.93798 -12.89573 -12.52783 -12.41466 -12.19505 -12.03580 -11.82698 -11.51793 -11.32589 -11.22164 -11.12594 -10.85179 -10.62368 -10.50223 -10.36097 -10.22494 -10.00717 -9.65183 -9.60675 -8.64502 -8.25076 -8.19542 -6.34204 -3.85826 -0.78133 0.29811 0.95885 1.44030 2.44707 2.46106 3.00220 3.03993 3.12828 3.38391 3.69711 3.88389 4.04146 4.07372 4.16785 4.57316 4.61732 4.71517 4.80343 4.96993 5.06311 5.13016 5.15069 5.19092 5.25229 5.34271 5.34975 5.53469 5.56321 5.65540 5.72464 5.74541 5.80250 5.87293 5.93164 6.03258 6.81083 7.00125 7.15426 7.49103 7.52266 7.54882 8.11022 8.56215 8.91562 9.39002 9.78697 10.78835 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002166 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.870941 B =12921.793043 C =14198.705201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.105 3.895 3 N -0.250 5.250 4 N -0.248 5.248 5 S 0.419 5.581 6 C -0.299 4.299 7 C 0.606 3.394 8 O -0.512 6.512 9 N -0.715 5.715 10 C 0.144 3.856 11 H 0.096 0.904 12 C -0.164 4.164 13 C -0.127 4.127 14 C 0.058 3.942 15 N -0.668 5.668 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.399 0.601 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.350 0.650 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 16.033 19.004 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.117 5.117 4 N -0.229 5.229 5 S 0.555 5.445 6 C -0.440 4.440 7 C 0.389 3.611 8 O -0.389 6.389 9 N -0.367 5.367 10 C 0.040 3.960 11 H 0.114 0.886 12 C -0.222 4.222 13 C -0.165 4.165 14 C -0.072 4.072 15 N -0.301 5.301 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.170 0.830 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.203 0.797 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.464 15.795 19.154 28.733 hybrid contribution -0.775 1.430 -1.068 1.946 sum -15.239 17.225 18.086 29.258 Atomic orbital electron populations 1.20556 0.83644 1.05176 1.04439 1.23003 1.00300 0.84994 0.95959 1.70643 0.96876 1.27957 1.16195 1.78913 1.09469 1.15554 1.18972 1.82632 1.09579 1.01710 1.50569 1.27770 0.98255 1.00019 1.17909 1.16403 0.85997 0.81911 0.76795 1.90824 1.15696 1.83010 1.49326 1.46057 1.09284 1.06494 1.74889 1.21122 0.98974 0.78389 0.97489 0.88558 1.22175 1.02216 1.02207 0.95586 1.21916 0.98419 1.01002 0.95176 1.21991 0.96602 0.94099 0.94470 1.60037 1.12241 1.55940 1.01877 1.21706 0.99499 0.97054 0.90222 1.19691 0.86502 0.87436 0.82896 1.90563 1.56580 1.38562 1.58980 1.42216 1.35985 1.35453 1.09302 1.19431 1.12487 1.16222 0.95289 0.86258 1.25047 0.96754 0.97635 0.96736 1.69623 1.29172 1.38156 1.15081 0.86671 0.79633 0.81844 0.81233 1.19663 1.20125 1.19478 0.89222 0.89739 0.87958 0.76639 0.92221 0.92005 0.90896 0.88563 0.91045 0.95736 0.90884 0.83038 0.89483 0.93846 0.79691 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.89 36.01 0.36 -0.17 16 2 C 0.10 0.92 7.00 -82.84 -0.58 0.34 16 3 N -0.25 -2.58 11.54 33.42 0.39 -2.19 16 4 N -0.25 -2.44 12.51 60.35 0.75 -1.69 16 5 S 0.42 2.81 23.05 -107.50 -2.48 0.33 16 6 C -0.30 -2.40 6.81 -35.95 -0.24 -2.65 16 7 C 0.61 5.15 7.77 -12.63 -0.10 5.06 16 8 O -0.51 -5.60 14.56 5.26 0.08 -5.53 16 9 N -0.72 -4.71 4.53 -54.96 -0.25 -4.96 16 10 C 0.14 0.99 2.58 -67.93 -0.17 0.82 16 11 H 0.10 0.78 7.58 -51.93 -0.39 0.39 16 12 C -0.16 -1.02 9.48 37.16 0.35 -0.67 16 13 C -0.13 -0.94 5.01 -26.72 -0.13 -1.07 16 14 C 0.06 0.56 5.57 -3.82 -0.02 0.54 16 15 N -0.67 -9.32 6.12 -115.05 -0.70 -10.03 16 16 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 17 C 0.45 9.92 7.82 -10.99 -0.09 9.83 16 18 O -0.56 -14.81 15.78 5.55 0.09 -14.72 16 19 N -0.59 -13.82 5.09 -10.97 -0.06 -13.87 16 20 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 24 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.76 6.48 -51.93 -0.34 0.43 16 31 H 0.40 1.92 8.03 -40.82 -0.33 1.59 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.22 7.75 -51.93 -0.40 -0.19 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.35 4.96 8.43 -39.29 -0.33 4.63 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -34.63 380.50 -7.11 -41.73 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.81 Total: 10.40 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.91 Total: 5.08 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.91 Total: -57.46 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.16 Total: -20.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.48 Total: 0.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.63 -7.11 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732671366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.541 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds