Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 110.27220 * 2 1 4 4 C 1.34774 * 119.99961 * 302.09019 * 3 2 1 5 5 O 1.21281 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99741 * 180.02562 * 4 3 2 7 7 S 1.81005 * 109.47173 * 179.97438 * 6 4 3 8 8 C 1.76189 * 100.00097 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00127 * 0.02562 * 8 7 6 10 10 C 1.38805 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31633 * 120.00034 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47174 * 270.00277 * 12 10 8 14 14 H 1.48501 * 109.47062 * 30.00228 * 12 10 8 15 15 H 1.48490 * 109.46901 * 150.00205 * 12 10 8 16 16 C 1.54597 * 110.39354 * 237.85474 * 2 1 3 17 17 C 1.54937 * 102.92134 * 219.08275 * 16 2 1 18 18 N 1.48524 * 103.22652 * 37.41690 * 17 16 2 19 19 C 1.46904 * 110.99806 * 200.27970 * 18 17 16 20 20 C 1.50707 * 109.46978 * 307.39276 * 19 18 17 21 21 N 1.30884 * 125.91053 * 275.02392 * 20 19 18 22 22 C 1.33550 * 109.77994 * 180.02562 * 21 20 19 23 23 O 1.35860 * 125.59150 * 179.97438 * 22 21 20 24 24 N 1.31076 * 108.81849 * 0.02562 * 22 21 20 25 25 N 1.34354 * 125.90924 * 94.71804 * 20 19 18 26 26 H 0.97004 * 126.77413 * 0.02562 * 25 20 19 27 27 C 1.47903 * 105.82278 * 320.79017 * 18 17 16 28 28 H 1.09004 * 109.47213 * 59.30153 * 1 2 3 29 29 H 1.09010 * 109.46895 * 179.29857 * 1 2 3 30 30 H 1.08996 * 109.47055 * 299.29705 * 1 2 3 31 31 H 0.97002 * 119.99685 * 122.09521 * 3 2 1 32 32 H 1.09005 * 109.47318 * 59.99759 * 6 4 3 33 33 H 1.09002 * 109.47150 * 299.99724 * 6 4 3 34 34 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 35 35 H 1.08997 * 110.72213 * 337.44280 * 16 2 1 36 36 H 1.09001 * 110.72317 * 100.72065 * 16 2 1 37 37 H 1.08995 * 110.66610 * 278.97545 * 17 16 2 38 38 H 1.09003 * 110.66257 * 155.84907 * 17 16 2 39 39 H 1.08998 * 109.47437 * 67.39359 * 19 18 17 40 40 H 1.09000 * 109.47138 * 187.39693 * 19 18 17 41 41 H 0.96698 * 114.00460 * 89.99512 * 23 22 21 42 42 H 1.09001 * 109.91863 * 265.98312 * 27 18 17 43 43 H 1.08996 * 110.08021 * 144.77617 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3743 0.0000 4 6 1.6894 2.2212 -0.9888 5 8 0.9562 1.8456 -1.8790 6 6 2.2120 3.6347 -0.9891 7 16 1.5712 4.5147 -2.4352 8 6 2.3177 6.0916 -2.1894 9 1 2.9530 6.2607 -1.3326 10 6 2.0893 7.1166 -3.0971 11 7 2.6466 8.2949 -2.9132 12 14 0.9911 6.8239 -4.5796 13 1 1.8131 6.3359 -5.7160 14 1 -0.0377 5.8081 -4.2407 15 1 0.3249 8.0951 -4.9606 16 6 2.0687 -0.7710 -1.2269 17 6 3.2882 -1.5326 -0.6495 18 7 2.8333 -1.9216 0.7098 19 6 3.9768 -2.2223 1.5816 20 6 4.8701 -3.2321 0.9080 21 7 4.7201 -4.5319 0.9400 22 6 5.6926 -5.1166 0.2357 23 8 5.8448 -6.4548 0.0574 24 7 6.4768 -4.1876 -0.2543 25 7 5.9549 -2.9535 0.1659 26 1 6.3097 -2.0736 -0.0365 27 6 2.0645 -0.7673 1.2236 28 1 -0.3634 0.5247 -0.8837 29 1 -0.3633 -1.0277 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 2.6243 1.6745 0.7117 32 1 3.3013 3.6194 -1.0268 33 1 1.8871 4.1424 -0.0809 34 1 2.4873 9.0110 -3.5478 35 1 1.3206 -1.4690 -1.6027 36 1 2.3809 -0.0801 -2.0101 37 1 4.1580 -0.8784 -0.5916 38 1 3.5090 -2.4159 -1.2488 39 1 4.5398 -1.3084 1.7709 40 1 3.6164 -2.6293 2.5263 41 1 5.3869 -6.8026 -0.7200 42 1 2.7148 -0.1204 1.8124 43 1 1.2327 -1.1145 1.8365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733395949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -1.297801 kcal Electronic energy + Delta-G solvation = -26961.506595 eV Core-core repulsion = 22976.441581 eV Total energy + Delta-G solvation = -3985.065013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37296 -41.48425 -39.51945 -38.47852 -35.95792 -34.66789 -33.60023 -33.36633 -31.96016 -30.89274 -29.95414 -28.17019 -27.84094 -25.88577 -23.67117 -23.25474 -22.28990 -21.66451 -20.55191 -19.86223 -19.69416 -18.68551 -17.95267 -17.54602 -17.31401 -17.09957 -16.68975 -16.31224 -16.20453 -15.74658 -15.57233 -15.07178 -14.88935 -14.86716 -14.59448 -14.18132 -14.10794 -13.81096 -13.42473 -13.34440 -13.17431 -13.05450 -12.98891 -12.79331 -12.62520 -12.52977 -12.43696 -12.05480 -11.86700 -11.85433 -11.27329 -11.17157 -11.06810 -10.79348 -10.70259 -10.51182 -10.09559 -9.53609 -8.97670 -8.51544 -6.21268 0.29662 1.00723 1.30672 1.30914 1.46523 1.50391 1.57422 1.63014 2.21186 2.25404 2.35234 2.72398 2.86935 2.94823 3.29803 3.41551 3.60911 3.75001 3.89667 3.94504 4.16773 4.25000 4.28051 4.31500 4.47448 4.50630 4.56864 4.74659 4.80762 4.85624 4.88684 4.91946 4.95947 5.02941 5.15741 5.39450 5.45307 5.70731 5.73093 5.79334 5.97566 6.11758 6.47960 6.54435 6.84996 6.94091 7.27672 8.60670 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.002134 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.341209 B =13116.862079 C =13641.107690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 N -0.705 5.705 4 C 0.538 3.462 5 O -0.549 6.549 6 C -0.112 4.112 7 S -0.175 6.175 8 C -0.527 4.527 9 H 0.062 0.938 10 C 0.044 3.956 11 N -0.917 5.917 12 Si 0.914 3.086 13 H -0.264 1.264 14 H -0.236 1.236 15 H -0.261 1.261 16 C -0.122 4.122 17 C 0.039 3.961 18 N -0.509 5.509 19 C 0.121 3.879 20 C 0.315 3.685 21 N -0.558 5.558 22 C 0.393 3.607 23 O -0.450 6.450 24 N -0.334 5.334 25 N -0.455 5.455 26 H 0.458 0.542 27 C 0.047 3.953 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.415 0.585 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.276 0.724 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.428 0.572 42 H 0.087 0.913 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -24.396 12.202 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 N -0.360 5.360 4 C 0.324 3.676 5 O -0.426 6.426 6 C -0.263 4.263 7 S 0.051 5.949 8 C -0.675 4.675 9 H 0.081 0.919 10 C -0.161 4.161 11 N -0.555 5.555 12 Si 0.736 3.264 13 H -0.188 1.188 14 H -0.160 1.160 15 H -0.186 1.186 16 C -0.162 4.162 17 C -0.089 4.089 18 N -0.235 5.235 19 C -0.009 4.009 20 C 0.036 3.964 21 N -0.297 5.297 22 C 0.073 3.927 23 O -0.254 6.254 24 N -0.177 5.177 25 N -0.179 5.179 26 H 0.308 0.692 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.289 0.711 42 H 0.105 0.895 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.327 -25.865 10.914 28.170 hybrid contribution 1.380 2.207 -0.132 2.607 sum 3.707 -23.657 10.782 26.262 Atomic orbital electron populations 1.22149 0.93633 1.03016 1.02604 1.21150 0.94642 0.80405 0.95662 1.45974 1.51708 1.11214 1.27096 1.19828 0.79914 0.86121 0.81761 1.90682 1.36837 1.77639 1.37427 1.23296 1.05168 0.95405 1.02454 1.84726 1.66554 1.09462 1.34155 1.22471 1.34297 0.96812 1.13900 0.91937 1.25569 0.96372 0.93902 1.00280 1.70018 1.44095 1.03250 1.38162 0.85872 0.80820 0.79692 0.80017 1.18846 1.15976 1.18580 1.22761 0.97737 0.98386 0.97267 1.23233 0.96830 0.98414 0.90436 1.64963 1.19735 1.37061 1.01724 1.21134 0.89009 0.94401 0.96321 1.24312 0.88430 0.91893 0.91725 1.70297 1.26747 1.06074 1.26549 1.21406 0.89866 0.86660 0.94726 1.84850 1.75460 1.11943 1.53125 1.78175 1.24074 0.90689 1.24795 1.47781 1.21931 1.08393 1.39804 0.69243 1.23220 0.99731 0.90369 0.94782 0.93334 0.90258 0.91442 0.74670 0.87076 0.87024 0.91446 0.90562 0.92311 0.92203 0.91346 0.88134 0.84897 0.71072 0.89457 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.12 71.98 0.58 -2.37 16 2 C 0.17 2.66 0.94 4.48 0.00 2.66 16 3 N -0.70 -12.50 5.15 -418.95 -2.16 -14.66 16 4 C 0.54 15.76 7.04 87.66 0.62 16.38 16 5 O -0.55 -20.53 12.76 -3.03 -0.04 -20.57 16 6 C -0.11 -3.79 6.16 71.24 0.44 -3.35 16 7 S -0.18 -8.42 18.55 -56.49 -1.05 -9.46 16 8 C -0.53 -29.69 10.04 67.96 0.68 -29.01 16 9 H 0.06 3.71 8.03 -2.91 -0.02 3.68 16 10 C 0.04 2.53 5.50 84.86 0.47 3.00 16 11 N -0.92 -54.86 13.97 21.65 0.30 -54.56 16 12 Si 0.91 44.12 27.74 68.60 1.90 46.02 16 13 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.24 -11.33 6.74 99.48 0.67 -10.66 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 C -0.12 -2.32 5.85 31.80 0.19 -2.14 16 17 C 0.04 0.52 5.48 86.65 0.47 0.99 16 18 N -0.51 -5.26 5.39 -887.58 -4.78 -10.04 16 19 C 0.12 0.82 5.66 85.56 0.48 1.30 16 20 C 0.32 4.25 6.47 138.24 0.89 5.14 16 21 N -0.56 -11.10 11.21 -304.29 -3.41 -14.51 16 22 C 0.39 8.03 9.47 180.56 1.71 9.74 16 23 O -0.45 -7.58 13.66 -91.97 -1.26 -8.84 16 24 N -0.33 -6.61 12.81 -174.94 -2.24 -8.85 16 25 N -0.45 -5.84 7.31 -50.71 -0.37 -6.21 16 26 H 0.46 2.95 8.96 -213.10 -1.91 1.04 16 27 C 0.05 0.38 6.16 86.45 0.53 0.91 16 28 H 0.05 1.32 6.07 -2.38 -0.01 1.31 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.42 4.42 8.09 -92.71 -0.75 3.67 16 32 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.08 1.57 7.86 -2.39 -0.02 1.55 16 36 H 0.06 1.48 6.81 -2.39 -0.02 1.46 16 37 H 0.06 0.62 8.02 -2.39 -0.02 0.60 16 38 H 0.07 1.11 7.90 -2.39 -0.02 1.10 16 39 H 0.10 0.05 7.81 -2.39 -0.02 0.03 16 40 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.43 2.69 9.06 -74.06 -0.67 2.02 16 42 H 0.09 0.25 6.89 -2.39 -0.02 0.23 16 43 H 0.11 0.77 7.68 -2.39 -0.02 0.75 16 Total: -1.00 -81.88 368.58 -8.30 -90.19 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.28 Total: 8.21 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 7.07 Total: 3.27 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -12.66 Total: -108.82 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.29 Total: -29.40 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.02 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.46 kcal Total: -81.88 -8.30 -90.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733395949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.889 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds