Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46957 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47339 * 305.00217 * 12 11 10 14 14 C 1.53002 * 109.46972 * 184.99816 * 12 11 10 15 15 N 1.46905 * 109.46838 * 65.00134 * 12 11 10 16 16 C 1.46905 * 110.99635 * 204.99704 * 15 12 11 17 17 C 1.50696 * 109.46969 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99990 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99934 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00148 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99684 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00096 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46889 * 119.99854 * 24 22 20 27 27 H 1.48492 * 109.47533 * 240.00051 * 24 22 20 28 28 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 29 29 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 30 30 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 31 31 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 33 33 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 34 34 H 1.08997 * 109.46721 * 300.00085 * 11 10 9 35 35 H 1.08996 * 109.46920 * 59.99719 * 11 10 9 36 36 H 1.08997 * 109.47087 * 60.00029 * 14 12 11 37 37 H 1.08997 * 109.47132 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46785 * 300.00370 * 14 12 11 39 39 H 1.00894 * 111.00087 * 81.04931 * 15 12 11 40 40 H 1.09003 * 109.47190 * 299.99925 * 16 15 12 41 41 H 1.09005 * 109.47168 * 59.99790 * 16 15 12 42 42 H 0.96998 * 120.00123 * 359.97438 * 19 17 16 43 43 H 0.97002 * 119.99648 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 6 3.0742 -7.3188 -0.0007 13 1 2.4031 -7.4886 0.8411 14 6 4.2919 -8.2367 0.1245 15 7 2.3686 -7.6099 -1.2559 16 6 1.4300 -8.7271 -1.0852 17 6 0.7270 -8.9964 -2.3906 18 8 0.9823 -8.3236 -3.3670 19 7 -0.1862 -9.9842 -2.4729 20 6 -0.8262 -10.2289 -3.6604 21 1 -0.5989 -9.6298 -4.5298 22 6 -1.7673 -11.2477 -3.7454 23 7 -2.0442 -11.9762 -2.6874 24 14 -2.6399 -11.5806 -5.3632 25 1 -2.1533 -10.6280 -6.3932 26 1 -2.3560 -12.9707 -5.8017 27 1 -4.1034 -11.4082 -5.1809 28 1 -0.3633 0.0008 1.0276 29 1 -0.3633 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5131 31 1 3.6973 -3.3319 0.0002 32 1 1.7112 -5.1325 0.8894 33 1 1.7118 -5.1319 -0.8905 34 1 4.1328 -5.6666 -0.8905 35 1 4.1328 -5.6674 0.8894 36 1 4.8155 -8.0206 1.0557 37 1 3.9647 -9.2764 0.1249 38 1 4.9630 -8.0669 -0.7175 39 1 3.0210 -7.7967 -2.0025 40 1 1.9776 -9.6179 -0.7773 41 1 0.6949 -8.4707 -0.3223 42 1 -0.3906 -10.5220 -1.6920 43 1 -2.7015 -12.6872 -2.7467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733899096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = -8.074600 kcal Electronic energy + Delta-G solvation = -26107.063919 eV Core-core repulsion = 22121.705041 eV Total energy + Delta-G solvation = -3985.358877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34468 -39.79211 -38.50021 -37.17112 -35.08486 -33.90725 -33.63741 -31.73807 -31.14076 -29.68148 -28.15935 -27.29147 -26.34075 -24.31983 -23.66716 -22.20424 -21.16207 -20.39628 -19.26156 -18.86582 -17.94269 -17.78392 -16.53093 -16.20697 -16.02763 -15.74736 -15.31107 -14.86637 -14.75201 -14.56165 -14.35389 -14.00981 -13.74420 -13.47902 -13.41350 -13.28572 -13.11811 -12.85034 -12.74907 -12.20158 -12.00379 -11.93031 -11.60923 -11.58047 -11.42312 -11.30471 -11.05907 -10.94988 -10.73286 -10.34301 -10.33952 -10.24887 -10.22211 -10.10086 -9.51839 -9.34148 -8.48165 -8.07371 -7.95789 -6.41746 -3.82372 -0.66954 0.39543 1.05262 1.56014 2.64522 2.69020 3.16607 3.27268 3.34540 3.49678 3.90836 4.07110 4.17612 4.29637 4.33767 4.60248 4.90287 4.93692 5.02702 5.14186 5.24483 5.25455 5.28432 5.33500 5.40711 5.46467 5.62044 5.70941 5.76786 5.83262 5.92591 6.01404 6.03538 6.09478 6.17657 6.27384 7.02047 7.18426 7.26102 7.55656 7.62398 7.75310 8.06699 8.61212 9.18228 9.54549 10.05788 10.76068 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.001992 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.281450 B =14052.528686 C =15407.113639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.103 3.897 3 N -0.249 5.249 4 N -0.252 5.252 5 S 0.409 5.591 6 C -0.290 4.290 7 C 0.599 3.401 8 O -0.506 6.506 9 N -0.720 5.720 10 C 0.122 3.878 11 C -0.117 4.117 12 C 0.085 3.915 13 H 0.081 0.919 14 C -0.183 4.183 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 16.992 11.634 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 N -0.116 5.116 4 N -0.233 5.233 5 S 0.545 5.455 6 C -0.430 4.430 7 C 0.381 3.619 8 O -0.381 6.381 9 N -0.371 5.371 10 C 0.000 4.000 11 C -0.155 4.155 12 C -0.026 4.026 13 H 0.099 0.901 14 C -0.242 4.242 15 N -0.295 5.295 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.230 0.770 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.345 18.682 11.077 26.028 hybrid contribution -0.702 -1.846 -0.175 1.982 sum 13.643 16.836 10.902 24.258 Atomic orbital electron populations 1.20576 0.83549 1.05322 1.04493 1.23008 1.00351 0.84971 0.96066 1.70630 0.96869 1.28011 1.16083 1.78907 1.09504 1.15463 1.19388 1.82472 1.09997 1.01832 1.51236 1.27825 0.97954 1.00167 1.17094 1.16406 0.86101 0.81845 0.77506 1.90869 1.15666 1.82856 1.48754 1.45938 1.08997 1.07129 1.75082 1.21533 0.97421 0.76811 1.04251 1.21772 0.97009 0.94452 1.02308 1.21497 0.94249 0.93217 0.93685 0.90097 1.22512 0.98970 1.00509 1.02203 1.60215 1.21394 1.42314 1.05625 1.21702 0.96012 0.92520 0.97991 1.19819 0.84199 0.83742 0.89645 1.90524 1.67312 1.50574 1.38336 1.41874 1.35421 1.29890 1.12904 1.19747 1.17878 1.15217 0.89906 0.87887 1.25264 0.97666 0.96188 0.98899 1.69619 1.34357 1.21299 1.29046 0.85804 0.78883 0.78188 0.81496 1.19222 1.20807 1.20720 0.89195 0.89747 0.87764 0.77038 0.91300 0.88630 0.90929 0.91321 0.92197 0.92274 0.92265 0.82977 0.93841 0.89575 0.77484 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.90 36.01 0.36 -0.33 16 2 C 0.10 1.05 7.00 -82.84 -0.58 0.48 16 3 N -0.25 -2.78 11.54 33.42 0.39 -2.40 16 4 N -0.25 -2.58 12.51 60.35 0.75 -1.83 16 5 S 0.41 2.89 23.05 -107.50 -2.48 0.42 16 6 C -0.29 -2.77 6.81 -35.95 -0.24 -3.01 16 7 C 0.60 6.64 7.80 -12.64 -0.10 6.54 16 8 O -0.51 -7.38 14.89 5.25 0.08 -7.30 16 9 N -0.72 -6.33 5.55 -61.46 -0.34 -6.67 16 10 C 0.12 1.25 5.56 -4.04 -0.02 1.23 16 11 C -0.12 -0.94 5.01 -26.73 -0.13 -1.08 16 12 C 0.08 0.85 2.59 -67.71 -0.18 0.67 16 13 H 0.08 0.80 7.80 -51.93 -0.40 0.39 16 14 C -0.18 -1.58 9.16 37.16 0.34 -1.24 16 15 N -0.66 -9.50 5.33 -107.98 -0.58 -10.07 16 16 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 17 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 18 O -0.58 -15.56 15.78 5.55 0.09 -15.48 16 19 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.04 6.47 -51.93 -0.34 0.70 16 31 H 0.40 2.26 7.90 -40.82 -0.32 1.94 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.32 7.75 -51.93 -0.40 0.92 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.35 5.27 8.17 -39.29 -0.32 4.95 16 40 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 41 H 0.09 1.33 8.06 -51.93 -0.42 0.92 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -33.84 382.02 -7.37 -41.21 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.77 Total: 12.10 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.91 Total: 6.18 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.89 Total: -58.93 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.48 Total: 0.42 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.84 -7.37 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733899096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.134 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds