Wall clock time and date at job start Sat Apr 11 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47445 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46957 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47339 * 305.00217 * 12 11 10 14 14 C 1.53002 * 109.46972 * 184.99816 * 12 11 10 15 15 N 1.46905 * 109.46838 * 65.00134 * 12 11 10 16 16 C 1.46905 * 110.99635 * 204.99704 * 15 12 11 17 17 C 1.50696 * 109.46969 * 180.02562 * 16 15 12 18 18 O 1.21290 * 119.99990 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99934 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00148 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99684 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00096 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46889 * 119.99854 * 24 22 20 27 27 H 1.48492 * 109.47533 * 240.00051 * 24 22 20 28 28 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 29 29 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 30 30 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 31 31 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 33 33 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 34 34 H 1.08997 * 109.46721 * 300.00085 * 11 10 9 35 35 H 1.08996 * 109.46920 * 59.99719 * 11 10 9 36 36 H 1.08997 * 109.47087 * 60.00029 * 14 12 11 37 37 H 1.08997 * 109.47132 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46785 * 300.00370 * 14 12 11 39 39 H 1.00894 * 111.00087 * 81.04931 * 15 12 11 40 40 H 1.09003 * 109.47190 * 299.99925 * 16 15 12 41 41 H 1.09005 * 109.47168 * 59.99790 * 16 15 12 42 42 H 0.96998 * 120.00123 * 359.97438 * 19 17 16 43 43 H 0.97002 * 119.99648 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5336 -5.8594 -0.0007 12 6 3.0742 -7.3188 -0.0007 13 1 2.4031 -7.4886 0.8411 14 6 4.2919 -8.2367 0.1245 15 7 2.3686 -7.6099 -1.2559 16 6 1.4300 -8.7271 -1.0852 17 6 0.7270 -8.9964 -2.3906 18 8 0.9823 -8.3236 -3.3670 19 7 -0.1862 -9.9842 -2.4729 20 6 -0.8262 -10.2289 -3.6604 21 1 -0.5989 -9.6298 -4.5298 22 6 -1.7673 -11.2477 -3.7454 23 7 -2.0442 -11.9762 -2.6874 24 14 -2.6399 -11.5806 -5.3632 25 1 -2.1533 -10.6280 -6.3932 26 1 -2.3560 -12.9707 -5.8017 27 1 -4.1034 -11.4082 -5.1809 28 1 -0.3633 0.0008 1.0276 29 1 -0.3633 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5131 31 1 3.6973 -3.3319 0.0002 32 1 1.7112 -5.1325 0.8894 33 1 1.7118 -5.1319 -0.8905 34 1 4.1328 -5.6666 -0.8905 35 1 4.1328 -5.6674 0.8894 36 1 4.8155 -8.0206 1.0557 37 1 3.9647 -9.2764 0.1249 38 1 4.9630 -8.0669 -0.7175 39 1 3.0210 -7.7967 -2.0025 40 1 1.9776 -9.6179 -0.7773 41 1 0.6949 -8.4707 -0.3223 42 1 -0.3906 -10.5220 -1.6920 43 1 -2.7015 -12.6872 -2.7467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733899096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:49 Heat of formation + Delta-G solvation = -35.659321 kcal Electronic energy + Delta-G solvation = -26108.260082 eV Core-core repulsion = 22121.705041 eV Total energy + Delta-G solvation = -3986.555041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09402 -40.66669 -40.17530 -38.29824 -36.14110 -35.79286 -34.38242 -33.31286 -32.64938 -30.52306 -28.87943 -28.03720 -27.93111 -25.80146 -24.68772 -23.00491 -21.98876 -21.30185 -20.98233 -19.90651 -19.55783 -18.63804 -17.70731 -17.29642 -16.97364 -16.83580 -16.61149 -16.33829 -15.95611 -15.60287 -15.55401 -15.23133 -15.10040 -14.49780 -14.29066 -14.12672 -14.02729 -13.95469 -13.55462 -13.51233 -13.47527 -13.08063 -12.83778 -12.64160 -12.60939 -12.40691 -12.23027 -12.16915 -12.09235 -11.70590 -11.50704 -11.50426 -11.16977 -10.98264 -10.80972 -10.32558 -10.18000 -10.00329 -9.21673 -8.46401 -5.94719 -1.40362 -0.28947 0.36467 0.78770 1.36475 1.41628 1.55711 1.81406 1.89041 2.07272 2.29510 2.77084 2.98109 3.21279 3.44267 3.58450 3.62589 3.88460 4.15682 4.21495 4.25789 4.37172 4.49406 4.52751 4.57766 4.63737 4.65403 4.73267 4.78968 4.94468 5.02285 5.13811 5.22843 5.24588 5.33924 5.39737 5.41747 5.93957 6.17183 6.28978 6.50379 6.53765 6.61234 6.97368 7.13778 7.58014 8.13464 8.71244 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.001992 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.281450 B =14052.528686 C =15407.113639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.095 3.905 3 N -0.275 5.275 4 N -0.285 5.285 5 S 0.513 5.487 6 C -0.313 4.313 7 C 0.598 3.402 8 O -0.549 6.549 9 N -0.705 5.705 10 C 0.127 3.873 11 C -0.106 4.106 12 C 0.083 3.917 13 H 0.085 0.915 14 C -0.177 4.177 15 N -0.677 5.677 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.413 0.587 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.345 0.655 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.396 0.604 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.980 16.920 12.800 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 N -0.140 5.140 4 N -0.266 5.266 5 S 0.649 5.351 6 C -0.454 4.454 7 C 0.382 3.618 8 O -0.428 6.428 9 N -0.357 5.357 10 C 0.004 3.996 11 C -0.145 4.145 12 C -0.027 4.027 13 H 0.104 0.896 14 C -0.235 4.235 15 N -0.310 5.310 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.250 0.750 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.230 0.770 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.340 18.615 12.282 27.647 hybrid contribution -1.169 -1.813 -0.509 2.216 sum 15.171 16.803 11.773 25.516 Atomic orbital electron populations 1.20563 0.83199 1.05007 1.05005 1.23213 1.00974 0.85181 0.95947 1.70695 0.97179 1.28563 1.17539 1.78614 1.09507 1.18128 1.20315 1.82006 1.06594 0.98810 1.47667 1.27747 1.00169 0.99293 1.18189 1.16615 0.85760 0.82661 0.76805 1.90847 1.17511 1.83629 1.50790 1.45775 1.09677 1.06263 1.73952 1.21370 0.98230 0.77906 1.02100 1.21737 0.96087 0.92319 1.04313 1.21642 0.94721 0.94757 0.91564 0.89641 1.22436 0.98237 0.99300 1.03567 1.60228 1.21870 1.41217 1.07672 1.21532 0.96557 0.94493 0.94002 1.20992 0.83064 0.81993 0.91481 1.90490 1.68269 1.51601 1.40623 1.41957 1.36163 1.30823 1.12338 1.19678 1.19774 1.16223 0.90446 0.90463 1.26030 0.97716 0.95464 1.02195 1.69675 1.34615 1.21443 1.30414 0.84886 0.77933 0.78210 0.77399 1.19884 1.19484 1.19707 0.88303 0.88612 0.89376 0.74986 0.91763 0.92638 0.90393 0.87699 0.89744 0.93347 0.92115 0.83636 0.91545 0.88184 0.77004 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.90 71.24 0.71 -0.69 16 2 C 0.09 1.93 7.00 42.65 0.30 2.23 16 3 N -0.27 -5.99 11.54 -48.18 -0.56 -6.55 16 4 N -0.28 -5.45 12.51 37.02 0.46 -4.99 16 5 S 0.51 6.05 23.05 -56.49 -1.30 4.75 16 6 C -0.31 -5.72 6.81 24.62 0.17 -5.56 16 7 C 0.60 13.07 7.80 86.59 0.68 13.74 16 8 O -0.55 -16.58 14.89 -4.12 -0.06 -16.64 16 9 N -0.70 -11.33 5.55 -466.62 -2.59 -13.92 16 10 C 0.13 2.48 5.56 86.38 0.48 2.96 16 11 C -0.11 -1.41 5.01 30.59 0.15 -1.26 16 12 C 0.08 1.47 2.59 44.92 0.12 1.58 16 13 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 14 C -0.18 -2.51 9.16 71.98 0.66 -1.85 16 15 N -0.68 -18.88 5.33 -495.55 -2.64 -21.52 16 16 C 0.07 2.16 5.96 85.55 0.51 2.67 16 17 C 0.44 20.57 7.82 87.66 0.69 21.26 16 18 O -0.62 -34.36 15.78 -3.06 -0.05 -34.41 16 19 N -0.58 -29.55 5.29 -306.99 -1.62 -31.17 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 24 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.88 6.47 -2.39 -0.02 1.87 16 31 H 0.41 3.53 7.90 -92.71 -0.73 2.80 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.57 7.75 -2.39 -0.02 1.55 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.80 7.45 -2.39 -0.02 0.79 16 38 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 39 H 0.34 10.22 8.17 -89.70 -0.73 9.49 16 40 H 0.07 1.87 7.44 -2.39 -0.02 1.85 16 41 H 0.10 2.99 8.06 -2.38 -0.02 2.97 16 42 H 0.40 19.28 7.90 -92.71 -0.73 18.54 16 43 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -76.43 382.02 -1.43 -77.86 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -1.11 Total: 34.16 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 5.73 Total: 16.63 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -6.66 Total: -127.70 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.11 Total: -51.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.30 Total: 4.75 kcal Total: -76.43 -1.43 -77.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733899096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.197 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds