Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30212 * 126.79136 * 2 1 4 4 O 1.20919 * 111.64846 * 180.28588 * 3 2 1 5 5 C 1.34063 * 111.54685 * 359.70578 * 4 3 2 6 6 Cl 1.73608 * 126.79220 * 180.02562 * 5 4 3 7 7 C 1.35669 * 106.41334 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.01782 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47162 * 90.01858 * 8 7 5 10 10 O 1.21279 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99563 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00229 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99546 * 180.02562 * 11 9 8 14 14 H 1.08996 * 109.47508 * 0.02562 * 13 11 9 15 15 C 1.53002 * 109.47083 * 120.00689 * 13 11 9 16 16 N 1.46498 * 109.46713 * 304.99744 * 15 13 11 17 17 C 1.36944 * 119.99896 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99762 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00599 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99676 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47013 * 90.00607 * 21 19 17 23 23 H 1.48504 * 109.47047 * 210.00099 * 21 19 17 24 24 H 1.48498 * 109.47157 * 330.00158 * 21 19 17 25 25 C 1.53006 * 109.46868 * 240.00135 * 13 11 9 26 26 C 1.53004 * 117.50119 * 248.74782 * 25 13 11 27 27 C 1.53002 * 117.49554 * 180.08809 * 25 13 11 28 28 H 1.08997 * 109.47705 * 270.20108 * 1 2 3 29 29 H 1.08999 * 109.47213 * 30.20057 * 1 2 3 30 30 H 1.09006 * 109.47452 * 150.19828 * 1 2 3 31 31 H 1.09004 * 109.46910 * 330.02093 * 8 7 5 32 32 H 1.09002 * 109.47161 * 210.02378 * 8 7 5 33 33 H 1.09002 * 109.47391 * 89.99442 * 12 11 9 34 34 H 1.09001 * 109.46813 * 329.99499 * 12 11 9 35 35 H 1.09004 * 109.47041 * 209.99626 * 12 11 9 36 36 H 1.08997 * 109.47059 * 64.99868 * 15 13 11 37 37 H 1.09000 * 109.47062 * 184.99937 * 15 13 11 38 38 H 0.97001 * 120.00363 * 359.97438 * 16 15 13 39 39 H 0.97002 * 120.00625 * 179.97438 * 20 19 17 40 40 H 1.09001 * 115.55261 * 34.42285 * 25 13 11 41 41 H 1.08997 * 117.49595 * 0.02562 * 26 25 13 42 42 H 1.08993 * 117.50109 * 145.02335 * 26 25 13 43 43 H 1.09008 * 117.49624 * 214.98005 * 27 25 13 44 44 H 1.09001 * 117.50282 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0056 5 6 3.6036 -0.6054 -0.0038 6 17 5.1012 -1.4836 -0.0094 7 6 2.3531 -1.1315 0.0033 8 6 1.9580 -2.5858 0.0086 9 6 1.8325 -3.0671 1.4311 10 8 2.0427 -2.3043 2.3502 11 7 1.4857 -4.3451 1.6819 12 6 1.2312 -5.2665 0.5717 13 6 1.3632 -4.8129 3.0648 14 1 1.5881 -3.9931 3.7470 15 6 -0.0643 -5.3047 3.3123 16 7 -1.0131 -4.2427 2.9687 17 6 -2.3586 -4.4543 3.1104 18 1 -2.7202 -5.4041 3.4758 19 6 -3.2575 -3.4479 2.7853 20 7 -2.8168 -2.2902 2.3404 21 14 -5.0929 -3.7369 2.9779 22 1 -5.5170 -3.3334 4.3427 23 1 -5.8293 -2.9300 1.9719 24 1 -5.3916 -5.1769 2.7721 25 6 2.3466 -5.9605 3.3040 26 6 1.7624 -7.3579 3.5203 27 6 2.3704 -6.5914 4.6976 28 1 -0.3634 0.0036 1.0276 29 1 -0.3633 0.8882 -0.5169 30 1 -0.3634 -0.8918 -0.5108 31 1 2.7194 -3.1710 -0.5072 32 1 1.0016 -2.7043 -0.5008 33 1 2.1597 -5.7647 0.2928 34 1 0.8474 -4.7087 -0.2825 35 1 0.4971 -6.0115 0.8788 36 1 -0.2593 -6.1804 2.6933 37 1 -0.1803 -5.5695 4.3633 38 1 -0.6882 -3.3892 2.6415 39 1 -3.4449 -1.5870 2.1129 40 1 3.2930 -5.8880 2.7681 41 1 0.6776 -7.4599 3.4918 42 1 2.3246 -8.2048 3.1271 43 1 3.3325 -6.9345 5.0784 44 1 1.6853 -6.1893 5.4440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734314876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = 72.040195 kcal Electronic energy + Delta-G solvation = -28604.107695 eV Core-core repulsion = 24587.886398 eV Total energy + Delta-G solvation = -4016.221297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -44.96733 -39.94823 -37.87752 -37.25760 -35.26950 -34.92659 -34.03833 -32.36518 -31.16436 -29.31223 -28.49037 -27.66486 -26.36039 -24.35526 -22.59183 -22.30600 -21.89394 -21.38590 -19.89889 -18.54938 -17.82890 -17.60445 -17.12204 -16.81420 -16.24943 -15.72127 -15.13188 -14.90703 -14.45566 -14.13915 -13.91944 -13.25903 -13.17321 -13.07640 -12.94586 -12.90285 -12.75424 -12.53243 -12.45939 -12.24287 -12.06381 -11.89670 -11.84526 -11.52279 -11.30070 -11.06054 -10.85309 -10.83111 -10.75277 -10.34811 -10.11942 -9.92646 -9.75871 -9.72694 -9.47431 -9.11015 -8.88565 -8.28240 -6.92828 -5.77283 -3.05958 1.01724 1.27132 2.16116 2.95465 3.25047 3.41280 3.46756 3.47974 3.65476 3.96702 4.14024 4.55623 4.60345 4.77805 4.86684 4.87451 5.00266 5.09022 5.11956 5.30628 5.39386 5.44364 5.53443 5.57260 5.63804 5.74147 5.76522 5.83029 5.88826 5.91328 5.95997 5.96842 6.04016 6.24834 6.26945 6.36304 6.44487 6.46078 6.66907 6.94916 7.66991 7.70291 8.15801 8.40643 8.51007 9.52676 10.10223 10.46203 11.44810 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.004568 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.893299 B = 6128.065627 C = 8639.224677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.352 5.352 4 O 0.105 5.895 5 C 0.006 3.994 6 Cl 0.040 6.960 7 C -0.143 4.143 8 C -0.065 4.065 9 C 0.522 3.478 10 O -0.529 6.529 11 N -0.593 5.593 12 C 0.082 3.918 13 C 0.162 3.838 14 H 0.103 0.897 15 C 0.143 3.857 16 N -0.727 5.727 17 C -0.240 4.240 18 H 0.068 0.932 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C -0.157 4.157 26 C -0.183 4.183 27 C -0.174 4.174 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.676 -4.942 -7.411 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 N -0.060 5.060 4 O 0.040 5.960 5 C -0.084 4.084 6 Cl 0.068 6.932 7 C -0.148 4.148 8 C -0.105 4.105 9 C 0.309 3.691 10 O -0.405 6.405 11 N -0.326 5.326 12 C -0.062 4.062 13 C 0.059 3.941 14 H 0.121 0.879 15 C 0.015 3.985 16 N -0.371 5.371 17 C -0.371 4.371 18 H 0.086 0.914 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.209 1.209 25 C -0.177 4.177 26 C -0.220 4.220 27 C -0.211 4.211 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.547 -3.366 -6.898 16.447 hybrid contribution -0.782 -0.840 0.009 1.148 sum 13.764 -4.206 -6.889 15.956 Atomic orbital electron populations 1.20282 0.84288 1.03639 1.05360 1.23406 0.99443 0.87396 0.99999 1.73903 0.88355 1.22845 1.20914 1.84883 1.22370 1.20351 1.68406 1.24386 0.90358 0.85161 1.08499 1.98426 1.28675 1.69287 1.96818 1.20134 0.89975 0.96974 1.07715 1.20005 1.04740 0.89399 0.96402 1.20158 0.76692 0.81660 0.90550 1.90719 1.49730 1.53887 1.46198 1.47546 1.68147 1.09992 1.06916 1.21726 1.00725 0.94421 0.89299 1.20819 0.94674 0.95794 0.82847 0.87902 1.21110 0.87322 0.92592 0.97514 1.42292 1.02026 1.13662 1.79138 1.19180 0.82650 0.98494 1.36812 0.91396 1.24691 0.97703 0.96106 1.02104 1.69665 1.33142 1.04245 1.50541 0.86250 0.85784 0.77118 0.77350 1.21804 1.21813 1.20877 1.22575 1.00549 0.94147 1.00433 1.23186 1.01806 0.94338 1.02659 1.22955 1.02546 1.04148 0.91494 0.88315 0.90640 0.89526 0.87713 0.86569 0.93223 0.91337 0.90218 0.95597 0.95550 0.77976 0.93607 0.87980 0.87525 0.89320 0.89097 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.39 36.01 0.37 -0.83 16 2 C 0.06 0.91 7.32 -82.12 -0.60 0.31 16 3 N -0.35 -5.88 12.07 33.44 0.40 -5.47 16 4 O 0.11 1.62 11.20 17.12 0.19 1.82 16 5 C 0.01 0.09 8.12 29.81 0.24 0.33 16 6 Cl 0.04 0.45 29.23 -51.86 -1.52 -1.07 16 7 C -0.14 -2.14 4.82 -104.38 -0.50 -2.64 16 8 C -0.07 -0.86 4.65 -29.03 -0.14 -1.00 16 9 C 0.52 8.79 7.37 -10.98 -0.08 8.71 16 10 O -0.53 -11.11 15.36 5.56 0.09 -11.03 16 11 N -0.59 -9.13 2.24 -173.93 -0.39 -9.52 16 12 C 0.08 0.98 9.61 59.85 0.58 1.55 16 13 C 0.16 2.68 2.59 -67.93 -0.18 2.50 16 14 H 0.10 2.01 6.90 -51.93 -0.36 1.66 16 15 C 0.14 2.74 4.14 -4.04 -0.02 2.72 16 16 N -0.73 -17.83 5.43 -59.91 -0.33 -18.16 16 17 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 21 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.16 -2.04 5.48 -90.61 -0.50 -2.53 16 26 C -0.18 -2.11 9.59 -26.69 -0.26 -2.36 16 27 C -0.17 -2.06 9.94 -26.69 -0.27 -2.32 16 28 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.24 7.65 -51.93 -0.40 0.85 16 31 H 0.10 1.06 8.11 -51.93 -0.42 0.63 16 32 H 0.12 1.42 6.91 -51.93 -0.36 1.06 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 35 H 0.08 1.04 6.53 -51.93 -0.34 0.70 16 36 H 0.03 0.48 5.34 -51.93 -0.28 0.20 16 37 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 38 H 0.39 10.25 7.07 -40.82 -0.29 9.97 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.35 5.80 -51.93 -0.30 1.05 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.10 1.25 7.65 -51.93 -0.40 0.85 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -32.21 379.81 -7.65 -39.86 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.94 Total: 9.77 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.59 Total: -2.59 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.41 Total: -59.38 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.28 Total: -9.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.52 Total: -1.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.21 -7.65 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.902 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds