Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30212 * 126.79136 * 2 1 4 4 O 1.20919 * 111.64846 * 180.28588 * 3 2 1 5 5 C 1.34063 * 111.54685 * 359.70578 * 4 3 2 6 6 Cl 1.73608 * 126.79220 * 180.02562 * 5 4 3 7 7 C 1.35669 * 106.41334 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.01782 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47162 * 90.01858 * 8 7 5 10 10 O 1.21279 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99563 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00229 * 0.02562 * 11 9 8 13 13 C 1.46499 * 119.99546 * 180.02562 * 11 9 8 14 14 H 1.08996 * 109.47508 * 0.02562 * 13 11 9 15 15 C 1.53002 * 109.47083 * 120.00689 * 13 11 9 16 16 N 1.46498 * 109.46713 * 304.99744 * 15 13 11 17 17 C 1.36944 * 119.99896 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99582 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99762 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00599 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99676 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47013 * 90.00607 * 21 19 17 23 23 H 1.48504 * 109.47047 * 210.00099 * 21 19 17 24 24 H 1.48498 * 109.47157 * 330.00158 * 21 19 17 25 25 C 1.53006 * 109.46868 * 240.00135 * 13 11 9 26 26 C 1.53004 * 117.50119 * 248.74782 * 25 13 11 27 27 C 1.53002 * 117.49554 * 180.08809 * 25 13 11 28 28 H 1.08997 * 109.47705 * 270.20108 * 1 2 3 29 29 H 1.08999 * 109.47213 * 30.20057 * 1 2 3 30 30 H 1.09006 * 109.47452 * 150.19828 * 1 2 3 31 31 H 1.09004 * 109.46910 * 330.02093 * 8 7 5 32 32 H 1.09002 * 109.47161 * 210.02378 * 8 7 5 33 33 H 1.09002 * 109.47391 * 89.99442 * 12 11 9 34 34 H 1.09001 * 109.46813 * 329.99499 * 12 11 9 35 35 H 1.09004 * 109.47041 * 209.99626 * 12 11 9 36 36 H 1.08997 * 109.47059 * 64.99868 * 15 13 11 37 37 H 1.09000 * 109.47062 * 184.99937 * 15 13 11 38 38 H 0.97001 * 120.00363 * 359.97438 * 16 15 13 39 39 H 0.97002 * 120.00625 * 179.97438 * 20 19 17 40 40 H 1.09001 * 115.55261 * 34.42285 * 25 13 11 41 41 H 1.08997 * 117.49595 * 0.02562 * 26 25 13 42 42 H 1.08993 * 117.50109 * 145.02335 * 26 25 13 43 43 H 1.09008 * 117.49624 * 214.98005 * 27 25 13 44 44 H 1.09001 * 117.50282 * 0.02562 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0056 5 6 3.6036 -0.6054 -0.0038 6 17 5.1012 -1.4836 -0.0094 7 6 2.3531 -1.1315 0.0033 8 6 1.9580 -2.5858 0.0086 9 6 1.8325 -3.0671 1.4311 10 8 2.0427 -2.3043 2.3502 11 7 1.4857 -4.3451 1.6819 12 6 1.2312 -5.2665 0.5717 13 6 1.3632 -4.8129 3.0648 14 1 1.5881 -3.9931 3.7470 15 6 -0.0643 -5.3047 3.3123 16 7 -1.0131 -4.2427 2.9687 17 6 -2.3586 -4.4543 3.1104 18 1 -2.7202 -5.4041 3.4758 19 6 -3.2575 -3.4479 2.7853 20 7 -2.8168 -2.2902 2.3404 21 14 -5.0929 -3.7369 2.9779 22 1 -5.5170 -3.3334 4.3427 23 1 -5.8293 -2.9300 1.9719 24 1 -5.3916 -5.1769 2.7721 25 6 2.3466 -5.9605 3.3040 26 6 1.7624 -7.3579 3.5203 27 6 2.3704 -6.5914 4.6976 28 1 -0.3634 0.0036 1.0276 29 1 -0.3633 0.8882 -0.5169 30 1 -0.3634 -0.8918 -0.5108 31 1 2.7194 -3.1710 -0.5072 32 1 1.0016 -2.7043 -0.5008 33 1 2.1597 -5.7647 0.2928 34 1 0.8474 -4.7087 -0.2825 35 1 0.4971 -6.0115 0.8788 36 1 -0.2593 -6.1804 2.6933 37 1 -0.1803 -5.5695 4.3633 38 1 -0.6882 -3.3892 2.6415 39 1 -3.4449 -1.5870 2.1129 40 1 3.2930 -5.8880 2.7681 41 1 0.6776 -7.4599 3.4918 42 1 2.3246 -8.2048 3.1271 43 1 3.3325 -6.9345 5.0784 44 1 1.6853 -6.1893 5.4440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734314876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 52.848099 kcal Electronic energy + Delta-G solvation = -28604.939926 eV Core-core repulsion = 24587.886398 eV Total energy + Delta-G solvation = -4017.053528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.17458 -41.21466 -39.07495 -38.27628 -36.46862 -36.30114 -35.71477 -33.59761 -32.98645 -30.64771 -29.76915 -28.96061 -27.59525 -26.00435 -24.11953 -23.44023 -23.04401 -22.56292 -21.09445 -19.90379 -19.05313 -18.99667 -18.78849 -18.06989 -17.51433 -16.92913 -16.49985 -16.23755 -16.03987 -15.37655 -15.17808 -14.90837 -14.65037 -14.45900 -14.33762 -14.13034 -13.87616 -13.72947 -13.58457 -13.45505 -13.21972 -13.04529 -12.93353 -12.90952 -12.84598 -12.70290 -12.29308 -12.21570 -11.98340 -11.95000 -11.72767 -11.35561 -11.15374 -10.94740 -10.89988 -10.68047 -10.25895 -9.51452 -8.94609 -7.89038 -5.18130 -0.06788 0.13364 0.93320 1.47992 1.49693 1.57294 1.69156 2.09023 2.51786 2.57531 2.95169 2.97707 3.43483 3.47993 3.60987 3.72865 3.75086 3.88498 4.03981 4.12257 4.18119 4.31155 4.34245 4.40311 4.47865 4.52895 4.58359 4.66054 4.69463 4.74352 4.82455 4.87556 4.93639 5.08199 5.09338 5.16799 5.19095 5.26863 5.35831 5.52188 5.68503 6.30683 6.49940 6.96974 7.25521 7.38129 8.12540 8.37216 9.33186 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.004568 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.893299 B = 6128.065627 C = 8639.224677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.040 3.960 3 N -0.372 5.372 4 O 0.103 5.897 5 C 0.008 3.992 6 Cl 0.070 6.930 7 C -0.152 4.152 8 C -0.058 4.058 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.592 5.592 12 C 0.074 3.926 13 C 0.170 3.830 14 H 0.064 0.936 15 C 0.146 3.854 16 N -0.739 5.739 17 C -0.244 4.244 18 H 0.074 0.926 19 C -0.066 4.066 20 N -0.959 5.959 21 Si 0.966 3.034 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.268 1.268 25 C -0.161 4.161 26 C -0.166 4.166 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.020 0.980 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.794 -7.509 -8.654 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 N -0.080 5.080 4 O 0.038 5.962 5 C -0.082 4.082 6 Cl 0.098 6.902 7 C -0.158 4.158 8 C -0.097 4.097 9 C 0.303 3.697 10 O -0.462 6.462 11 N -0.323 5.323 12 C -0.067 4.067 13 C 0.066 3.934 14 H 0.082 0.918 15 C 0.019 3.981 16 N -0.381 5.381 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.259 4.259 20 N -0.609 5.609 21 Si 0.796 3.204 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.193 1.193 25 C -0.180 4.180 26 C -0.203 4.203 27 C -0.212 4.212 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.161 0.839 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.670 -6.011 -8.150 18.658 hybrid contribution -1.048 -0.112 0.459 1.150 sum 14.622 -6.123 -7.691 17.619 Atomic orbital electron populations 1.20182 0.84312 1.04888 1.03463 1.23608 0.99744 0.88093 1.00382 1.73876 0.88882 1.23504 1.21707 1.84840 1.21878 1.21160 1.68311 1.24629 0.91546 0.84739 1.07270 1.98435 1.26748 1.68404 1.96597 1.20339 0.90015 0.97521 1.07882 1.20082 1.06610 0.88732 0.94309 1.20781 0.75884 0.81540 0.91481 1.90695 1.52261 1.55249 1.47999 1.47663 1.67208 1.10229 1.07244 1.22002 1.02520 0.93857 0.88363 1.20535 0.93876 0.95833 0.83201 0.91812 1.21243 0.88050 0.91703 0.97128 1.42472 1.02179 1.14348 1.79140 1.19544 0.83958 0.98497 1.35618 0.90855 1.25435 1.01638 0.96100 1.02751 1.69822 1.34105 1.04963 1.51995 0.85259 0.81014 0.77549 0.76588 1.22289 1.22163 1.19316 1.22413 1.00263 0.93547 1.01788 1.23199 1.01278 0.94089 1.01714 1.23036 1.03428 1.03865 0.90914 0.91654 0.89092 0.88658 0.83905 0.85419 0.89419 0.90034 0.91236 0.93841 0.96236 0.79511 0.94169 0.86401 0.88909 0.86483 0.86800 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.39 71.24 0.74 -1.54 16 2 C 0.04 1.31 7.32 43.55 0.32 1.63 16 3 N -0.37 -12.60 12.07 -49.43 -0.60 -13.20 16 4 O 0.10 3.19 11.20 71.42 0.80 3.99 16 5 C 0.01 0.23 8.12 67.22 0.55 0.78 16 6 Cl 0.07 1.44 29.23 -2.72 -0.08 1.37 16 7 C -0.15 -4.48 4.82 -19.71 -0.10 -4.58 16 8 C -0.06 -1.44 4.65 29.10 0.14 -1.31 16 9 C 0.51 17.17 7.37 87.66 0.65 17.82 16 10 O -0.58 -25.27 15.36 -3.02 -0.05 -25.32 16 11 N -0.59 -17.63 2.24 -822.58 -1.85 -19.48 16 12 C 0.07 1.58 9.61 127.77 1.23 2.81 16 13 C 0.17 5.59 2.59 44.99 0.12 5.71 16 14 H 0.06 2.62 6.90 -2.39 -0.02 2.60 16 15 C 0.15 5.59 4.14 86.38 0.36 5.94 16 16 N -0.74 -36.86 5.43 -343.46 -1.87 -38.73 16 17 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 18 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 20 N -0.96 -57.07 13.06 21.65 0.28 -56.79 16 21 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C -0.16 -3.83 5.48 -10.79 -0.06 -3.89 16 26 C -0.17 -3.33 9.59 30.62 0.29 -3.04 16 27 C -0.17 -3.80 9.94 30.62 0.30 -3.50 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.09 2.80 7.65 -2.38 -0.02 2.78 16 31 H 0.14 2.39 8.11 -2.39 -0.02 2.37 16 32 H 0.13 2.90 6.91 -2.39 -0.02 2.89 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.53 6.44 -2.39 -0.02 1.51 16 35 H 0.07 1.64 6.53 -2.38 -0.02 1.63 16 36 H 0.04 1.55 5.34 -2.39 -0.01 1.54 16 37 H 0.02 0.79 7.44 -2.39 -0.02 0.77 16 38 H 0.37 20.46 7.07 -92.71 -0.65 19.80 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.09 2.15 5.80 -2.39 -0.01 2.13 16 42 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.08 2.04 7.65 -2.39 -0.02 2.02 16 Total: -1.00 -72.18 379.81 4.90 -67.27 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.39 Total: 32.39 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.84 Total: 1.13 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -4.03 Total: -128.19 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.75 Total: -21.33 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 17 Polarization: 1.44 SS G_CDS: -0.08 Total: 1.37 kcal Total: -72.18 4.90 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.120 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds