Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30224 * 126.79018 * 2 1 4 4 O 1.20910 * 111.64177 * 180.28620 * 3 2 1 5 5 C 1.34057 * 111.56034 * 359.70506 * 4 3 2 6 6 Cl 1.73599 * 126.80052 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40767 * 0.02562 * 5 4 3 8 8 C 1.50693 * 128.01882 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47449 * 90.02129 * 8 7 5 10 10 O 1.21284 * 119.99860 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00240 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99946 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01968 * 325.70269 * 12 11 9 14 14 C 1.54266 * 110.07197 * 87.12181 * 12 11 9 15 15 C 1.54894 * 104.19690 * 95.69521 * 14 12 11 16 16 C 1.54884 * 102.74702 * 37.94277 * 15 14 12 17 17 H 1.09000 * 110.59769 * 80.78992 * 16 15 14 18 18 C 1.53000 * 110.48444 * 203.38159 * 16 15 14 19 19 N 1.46505 * 109.47077 * 289.77194 * 18 16 15 20 20 C 1.36929 * 119.99987 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99891 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99980 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00189 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47141 * 89.99899 * 24 22 20 26 26 H 1.48500 * 109.47164 * 210.00363 * 24 22 20 27 27 H 1.48502 * 109.46769 * 329.99835 * 24 22 20 28 28 C 1.53873 * 110.03247 * 204.31155 * 12 11 9 29 29 H 1.08999 * 109.46566 * 270.19765 * 1 2 3 30 30 H 1.09004 * 109.46974 * 30.19936 * 1 2 3 31 31 H 1.08996 * 109.46930 * 150.19759 * 1 2 3 32 32 H 1.09001 * 109.46761 * 330.02167 * 8 7 5 33 33 H 1.08998 * 109.47060 * 210.02726 * 8 7 5 34 34 H 0.97000 * 120.00222 * 0.02562 * 11 9 8 35 35 H 1.08998 * 110.48638 * 214.37659 * 14 12 11 36 36 H 1.09001 * 110.48707 * 337.01745 * 14 12 11 37 37 H 1.08996 * 110.75265 * 279.62931 * 15 14 12 38 38 H 1.08991 * 110.91507 * 156.33313 * 15 14 12 39 39 H 1.08992 * 109.47364 * 49.77465 * 18 16 15 40 40 H 1.09001 * 109.46830 * 169.77768 * 18 16 15 41 41 H 0.96999 * 119.99616 * 0.02562 * 19 18 16 42 42 H 0.97004 * 120.00141 * 180.02562 * 23 22 20 43 43 H 1.09002 * 110.03049 * 359.94889 * 28 12 11 44 44 H 1.08996 * 110.03511 * 121.38227 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0429 0.0000 4 8 3.4540 0.7269 -0.0056 5 6 3.6037 -0.6053 -0.0038 6 17 5.1012 -1.4834 -0.0094 7 6 2.3531 -1.1315 0.0034 8 6 1.9581 -2.5857 0.0086 9 6 1.8326 -3.0670 1.4311 10 8 2.0428 -2.3041 2.3502 11 7 1.4858 -4.3450 1.6820 12 6 1.3643 -4.8131 3.0649 13 1 2.1011 -4.3136 3.6940 14 6 -0.0577 -4.5359 3.5947 15 6 -0.8153 -5.8671 3.3640 16 6 0.2602 -6.9331 3.6895 17 1 0.3417 -7.0793 4.7666 18 6 -0.0692 -8.2557 2.9943 19 7 -1.2443 -8.8604 3.6267 20 6 -1.7283 -10.0569 3.1694 21 1 -1.2435 -10.5550 2.3428 22 6 -2.8419 -10.6296 3.7683 23 7 -3.4329 -10.0222 4.7753 24 14 -3.5018 -12.2622 3.1450 25 1 -2.8445 -13.3741 3.8778 26 1 -4.9688 -12.3210 3.3684 27 1 -3.2168 -12.3894 1.6931 28 6 1.5665 -6.3373 3.1252 29 1 -0.3632 0.0035 1.0277 30 1 -0.3633 0.8882 -0.5169 31 1 -0.3633 -0.8917 -0.5107 32 1 2.7195 -3.1708 -0.5071 33 1 1.0018 -2.7042 -0.5008 34 1 1.3173 -4.9551 0.9469 35 1 -0.0285 -4.2927 4.6568 36 1 -0.5245 -3.7286 3.0303 37 1 -1.1413 -5.9513 2.3274 38 1 -1.6637 -5.9546 4.0426 39 1 -0.2787 -8.0701 1.9409 40 1 0.7798 -8.9336 3.0821 41 1 -1.6798 -8.4128 4.3689 42 1 -4.2110 -10.4226 5.1941 43 1 1.7541 -6.7289 2.1254 44 1 2.4014 -6.5775 3.7834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734482621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 18.830510 kcal Electronic energy + Delta-G solvation = -26808.037457 eV Core-core repulsion = 22789.508815 eV Total energy + Delta-G solvation = -4018.528642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.42534 -40.19212 -38.17153 -37.61003 -35.72347 -34.81478 -33.42030 -32.77307 -31.15075 -29.60424 -29.01202 -28.82089 -27.44087 -24.44015 -22.90096 -22.20439 -21.88539 -20.96253 -20.18170 -19.51409 -18.29121 -18.11787 -17.20115 -17.03784 -16.41451 -16.12713 -15.39001 -15.06184 -14.62360 -14.33359 -13.99416 -13.79613 -13.70078 -13.51408 -13.30494 -13.17048 -13.09430 -12.84393 -12.81823 -12.60203 -12.29719 -12.08965 -11.65992 -11.49307 -11.30315 -11.09829 -10.87048 -10.83888 -10.58110 -10.44362 -10.30998 -10.26964 -10.04607 -9.97961 -9.68412 -9.56820 -9.15358 -8.88125 -6.92593 -5.77762 -3.06108 0.64874 0.83768 1.65688 2.41030 2.99368 3.23188 3.41922 3.46901 3.48697 3.62616 4.09532 4.37016 4.38606 4.55868 4.58929 4.74586 4.76684 4.93421 5.02565 5.07682 5.12820 5.21650 5.28252 5.44877 5.53151 5.57745 5.63000 5.67132 5.73115 5.82576 5.87690 6.04262 6.09554 6.24112 6.28058 6.48070 6.53906 6.56357 6.78438 6.90515 7.32082 7.68003 7.68933 8.02869 8.41401 9.52481 10.11484 10.45898 11.45159 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.001937 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.731756 B =14455.240907 C =14866.567697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.045 3.955 3 N -0.347 5.347 4 O 0.110 5.890 5 C 0.013 3.987 6 Cl 0.049 6.951 7 C -0.150 4.150 8 C -0.070 4.070 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.718 5.718 12 C 0.142 3.858 13 H 0.087 0.913 14 C -0.132 4.132 15 C -0.111 4.111 16 C -0.099 4.099 17 H 0.077 0.923 18 C 0.162 3.838 19 N -0.732 5.732 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.122 4.122 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 19.551 -12.141 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.054 5.054 4 O 0.044 5.956 5 C -0.077 4.077 6 Cl 0.077 6.923 7 C -0.155 4.155 8 C -0.110 4.110 9 C 0.299 3.701 10 O -0.408 6.408 11 N -0.370 5.370 12 C 0.038 3.962 13 H 0.105 0.895 14 C -0.171 4.171 15 C -0.149 4.149 16 C -0.118 4.118 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.376 5.376 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.161 4.161 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.320 21.187 -11.561 28.064 hybrid contribution -0.422 -2.013 -0.373 2.090 sum 13.898 19.174 -11.934 26.518 Atomic orbital electron populations 1.20250 0.85122 1.04062 1.04175 1.23267 0.99136 0.87668 1.01282 1.73934 0.88447 1.22831 1.20183 1.84907 1.22183 1.20499 1.68023 1.24489 0.90831 0.85045 1.07327 1.98459 1.28247 1.68939 1.96653 1.20063 0.90081 0.96768 1.08565 1.20001 1.05173 0.89756 0.96087 1.20302 0.76829 0.82281 0.90649 1.90738 1.49329 1.54489 1.46252 1.46203 1.70220 1.11301 1.09291 1.21666 0.97979 0.94762 0.81830 0.89491 1.22778 0.94802 0.98325 1.01177 1.22491 0.97805 0.92629 1.01933 1.22181 0.93248 0.95646 1.00674 0.90488 1.20680 0.90450 0.90750 0.94728 1.42355 1.31438 1.23781 1.40021 1.19222 1.08346 0.96938 1.12513 0.91284 1.24741 0.98671 0.99066 0.98603 1.69657 1.23440 1.39600 1.25512 0.86199 0.78068 0.83876 0.78100 1.21746 1.21784 1.20806 1.22452 0.98844 0.92689 1.02074 0.89434 0.90040 0.89693 0.87102 0.86691 0.76378 0.90999 0.91741 0.91552 0.91036 0.96485 0.96596 0.78247 0.93527 0.90901 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16 2 C 0.05 0.45 7.32 -82.12 -0.60 -0.15 16 3 N -0.35 -4.03 12.07 33.44 0.40 -3.63 16 4 O 0.11 1.22 11.20 17.13 0.19 1.41 16 5 C 0.01 0.13 8.12 29.82 0.24 0.37 16 6 Cl 0.05 0.39 29.23 -51.86 -1.52 -1.13 16 7 C -0.15 -1.39 4.82 -104.38 -0.50 -1.90 16 8 C -0.07 -0.48 6.10 -29.04 -0.18 -0.66 16 9 C 0.51 5.16 7.82 -10.99 -0.09 5.08 16 10 O -0.53 -7.59 15.70 5.55 0.09 -7.51 16 11 N -0.72 -6.45 5.04 -52.72 -0.27 -6.71 16 12 C 0.14 1.56 3.23 -66.81 -0.22 1.34 16 13 H 0.09 1.06 7.59 -51.93 -0.39 0.66 16 14 C -0.13 -1.60 6.54 -25.07 -0.16 -1.77 16 15 C -0.11 -1.57 6.19 -24.74 -0.15 -1.73 16 16 C -0.10 -1.46 2.89 -88.96 -0.26 -1.71 16 17 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.16 3.05 5.54 -4.04 -0.02 3.03 16 19 N -0.73 -18.03 5.49 -59.91 -0.33 -18.36 16 20 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 21 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 24 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C -0.12 -1.37 6.14 -25.61 -0.16 -1.53 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.12 0.50 7.65 -51.93 -0.40 0.11 16 34 H 0.40 2.66 8.31 -40.82 -0.34 2.33 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.32 8.02 -51.93 -0.42 -0.09 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 9.98 7.63 -40.82 -0.31 9.67 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -33.67 384.68 -8.29 -41.96 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.39 Total: 5.35 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.97 Total: -7.06 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.53 Total: -55.95 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: 0.28 Total: -6.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.52 Total: -1.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.67 -8.29 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734482621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.788 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds