Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30214 * 126.79054 * 2 1 4 4 O 1.20918 * 111.64861 * 179.73371 * 3 2 1 5 5 C 1.34062 * 111.55080 * 359.97438 * 4 3 2 6 6 Cl 1.73603 * 126.79783 * 179.97438 * 5 4 3 7 7 C 1.35673 * 106.40859 * 359.97438 * 5 4 3 8 8 C 1.50705 * 128.01447 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47216 * 270.00158 * 8 7 5 10 10 O 1.21278 * 120.00284 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00235 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00186 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.67115 * 34.30337 * 12 11 9 14 14 C 1.54888 * 110.75594 * 271.06338 * 12 11 9 15 15 C 1.54461 * 104.10123 * 203.89703 * 14 12 11 16 16 C 1.53879 * 106.68733 * 23.34232 * 15 14 12 17 17 H 1.08998 * 110.07047 * 240.85259 * 16 15 14 18 18 C 1.52997 * 110.03138 * 119.44544 * 16 15 14 19 19 N 1.46492 * 109.47464 * 67.83467 * 18 16 15 20 20 C 1.36942 * 120.00114 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00277 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00032 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99869 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00118 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47272 * 59.99732 * 24 22 20 26 26 H 1.48504 * 109.47048 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46745 * 299.99507 * 24 22 20 28 28 C 1.54264 * 106.59496 * 0.16003 * 16 15 14 29 29 H 1.09004 * 109.46701 * 90.03040 * 1 2 3 30 30 H 1.08994 * 109.47153 * 210.02500 * 1 2 3 31 31 H 1.08997 * 109.47110 * 330.03055 * 1 2 3 32 32 H 1.08998 * 109.47082 * 30.00817 * 8 7 5 33 33 H 1.09005 * 109.46941 * 150.00251 * 8 7 5 34 34 H 0.97009 * 119.99433 * 0.02562 * 11 9 8 35 35 H 1.09008 * 110.48700 * 322.42185 * 14 12 11 36 36 H 1.08998 * 110.48566 * 85.06774 * 14 12 11 37 37 H 1.09007 * 109.85901 * 264.10251 * 15 14 12 38 38 H 1.09005 * 110.16951 * 142.74896 * 15 14 12 39 39 H 1.08999 * 109.47094 * 187.83450 * 18 16 15 40 40 H 1.08998 * 109.47055 * 307.83265 * 18 16 15 41 41 H 0.96998 * 120.00052 * 359.97438 * 19 18 16 42 42 H 0.97001 * 119.99840 * 179.97438 * 23 22 20 43 43 H 1.09000 * 110.48608 * 217.71287 * 28 16 15 44 44 H 1.08995 * 110.48777 * 95.07055 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 0.0052 5 6 3.6037 -0.6053 0.0100 6 17 5.1012 -1.4835 0.0176 7 6 2.3531 -1.1314 0.0078 8 6 1.9581 -2.5858 0.0108 9 6 1.8307 -3.0746 -1.4090 10 8 2.0405 -2.3169 -2.3324 11 7 1.4845 -4.3542 -1.6527 12 6 1.3612 -4.8296 -3.0329 13 1 2.0924 -4.3392 -3.6755 14 6 -0.0759 -4.6041 -3.5647 15 6 -0.2280 -5.6487 -4.6923 16 6 0.7858 -6.7681 -4.3974 17 1 1.4992 -6.8521 -5.2172 18 6 0.0556 -8.0980 -4.2002 19 7 -0.5345 -8.5243 -5.4715 20 6 -1.2413 -9.6953 -5.5397 21 1 -1.3634 -10.3046 -4.6565 22 6 -1.8000 -10.0995 -6.7444 23 7 -1.6508 -9.3571 -7.8210 24 14 -2.7648 -11.6964 -6.8374 25 1 -3.9222 -11.6301 -5.9095 26 1 -3.2541 -11.8990 -8.2247 27 1 -1.8853 -12.8291 -6.4518 28 6 1.5173 -6.3692 -3.0991 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5133 32 1 2.7200 -3.1682 0.5287 33 1 1.0024 -2.7016 0.5221 34 1 1.3171 -4.9604 -0.9140 35 1 -0.8071 -4.7860 -2.7770 36 1 -0.1824 -3.5938 -3.9596 37 1 -0.0068 -5.1888 -5.6555 38 1 -1.2402 -6.0533 -4.6959 39 1 0.7625 -8.8531 -3.8564 40 1 -0.7324 -7.9731 -3.4576 41 1 -0.4245 -7.9773 -6.2649 42 1 -2.0408 -9.6398 -8.6630 43 1 2.5707 -6.6437 -3.1550 44 1 1.0452 -6.8380 -2.2358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734482625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -4.615275 kcal Electronic energy + Delta-G solvation = -26654.836320 eV Core-core repulsion = 22635.290993 eV Total energy + Delta-G solvation = -4019.545327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.15309 -40.98684 -39.28297 -38.28099 -36.57639 -36.25033 -34.79235 -33.53795 -32.86468 -30.45011 -30.03714 -29.66736 -28.46217 -26.12067 -23.96006 -23.61784 -22.57623 -21.67130 -21.57599 -20.43544 -19.11797 -19.00675 -18.83793 -17.96226 -17.31823 -16.87928 -16.64247 -16.46071 -15.90803 -15.39672 -15.13798 -14.94742 -14.75033 -14.38310 -14.31451 -14.19738 -14.12027 -13.67440 -13.47790 -13.34064 -13.27731 -13.13839 -12.94862 -12.80264 -12.75101 -12.42409 -12.20629 -12.06907 -11.96652 -11.81765 -11.69049 -11.49233 -11.26464 -11.20526 -10.88577 -10.87373 -10.28873 -9.99804 -8.96334 -7.92974 -5.21401 -0.04131 0.12672 0.95847 1.48128 1.51329 1.57440 1.66068 2.23311 2.52098 2.58292 2.99356 3.40442 3.46568 3.60455 3.67764 3.75481 3.77328 3.87941 4.08170 4.24080 4.40292 4.42714 4.50342 4.54533 4.57803 4.62469 4.64695 4.68811 4.73686 4.77462 4.82167 4.95856 5.03855 5.15120 5.18542 5.21624 5.29047 5.43625 5.51423 5.55231 5.63698 6.29463 6.63058 6.96411 7.32256 7.35392 8.13996 8.35639 9.30569 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.001832 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.791818 B =15276.170837 C =15774.003575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.040 3.960 3 N -0.377 5.377 4 O 0.092 5.908 5 C 0.003 3.997 6 Cl 0.061 6.939 7 C -0.154 4.154 8 C -0.063 4.063 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.705 5.705 12 C 0.149 3.851 13 H 0.076 0.924 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.090 4.090 17 H 0.060 0.940 18 C 0.160 3.840 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.077 0.923 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.974 3.026 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.277 1.277 28 C -0.105 4.105 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.420 0.580 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.083 0.917 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 16.575 24.307 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 N -0.087 5.087 4 O 0.028 5.972 5 C -0.087 4.087 6 Cl 0.090 6.910 7 C -0.159 4.159 8 C -0.102 4.102 9 C 0.302 3.698 10 O -0.459 6.459 11 N -0.357 5.357 12 C 0.043 3.957 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.151 4.151 16 C -0.110 4.110 17 H 0.079 0.921 18 C 0.034 3.966 19 N -0.389 5.389 20 C -0.375 4.375 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.203 1.203 28 C -0.144 4.144 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.258 0.742 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.900 18.180 23.742 31.499 hybrid contribution -0.301 -1.579 -0.921 1.852 sum 9.599 16.601 22.821 29.808 Atomic orbital electron populations 1.20407 0.83226 1.05813 1.04237 1.23849 1.00456 0.87565 1.00024 1.73927 0.88863 1.24105 1.21758 1.84865 1.22242 1.21373 1.68671 1.24821 0.91848 0.84841 1.07162 1.98460 1.27564 1.68422 1.96573 1.20427 0.89581 0.97932 1.08005 1.20143 1.07972 0.88113 0.94014 1.20862 0.75538 0.81880 0.91548 1.90746 1.51272 1.56175 1.47691 1.45805 1.69805 1.11385 1.08697 1.21751 0.96466 0.94404 0.83030 0.90615 1.22653 0.97240 0.97974 0.98043 1.22068 0.99253 0.95499 0.98323 1.21766 0.96717 0.94100 0.98386 0.92102 1.20920 0.94353 0.93616 0.87734 1.42620 1.63606 1.24643 1.08067 1.19629 1.24327 0.98626 0.94965 0.90489 1.25601 1.03427 1.02492 0.95656 1.69824 1.51597 1.40665 1.00162 0.85197 0.78694 0.79638 0.76152 1.20273 1.22405 1.20315 1.22491 1.01280 0.93124 0.97465 0.90066 0.86901 0.89370 0.84375 0.83054 0.74195 0.90177 0.92590 0.93211 0.92890 0.96103 0.95704 0.79583 0.94110 0.89851 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.39 71.24 0.74 -0.16 16 2 C 0.04 0.72 7.32 43.55 0.32 1.04 16 3 N -0.38 -8.62 12.07 -49.42 -0.60 -9.22 16 4 O 0.09 2.04 11.20 71.43 0.80 2.84 16 5 C 0.00 0.06 8.12 67.23 0.55 0.61 16 6 Cl 0.06 0.89 29.23 -2.72 -0.08 0.81 16 7 C -0.15 -2.49 4.82 -19.71 -0.10 -2.59 16 8 C -0.06 -0.57 6.10 29.10 0.18 -0.39 16 9 C 0.51 8.64 7.82 87.65 0.69 9.33 16 10 O -0.58 -15.97 15.72 -3.02 -0.05 -16.02 16 11 N -0.70 -9.50 5.19 -436.45 -2.27 -11.76 16 12 C 0.15 2.99 3.21 46.28 0.15 3.14 16 13 H 0.08 1.88 7.62 -2.39 -0.02 1.86 16 14 C -0.12 -2.83 6.53 31.74 0.21 -2.62 16 15 C -0.11 -3.42 6.19 31.39 0.19 -3.23 16 16 C -0.09 -2.68 2.96 -10.07 -0.03 -2.71 16 17 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 18 C 0.16 6.00 5.27 86.38 0.46 6.45 16 19 N -0.75 -37.54 5.39 -343.48 -1.85 -39.39 16 20 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 23 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 24 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 C -0.11 -2.09 5.98 31.67 0.19 -1.90 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 0.58 7.65 -2.39 -0.02 0.56 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.14 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.15 0.28 7.65 -2.38 -0.02 0.27 16 34 H 0.42 2.54 8.55 -92.70 -0.79 1.75 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.05 1.87 7.61 -2.38 -0.02 1.85 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.37 20.18 7.55 -92.71 -0.70 19.48 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.09 1.52 7.73 -2.39 -0.02 1.50 16 Total: -1.00 -76.30 384.85 2.66 -73.64 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.45 Total: 20.59 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.84 Total: -9.80 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -4.43 Total: -119.96 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.75 Total: -13.18 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -76.30 2.66 -73.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734482625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.024 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds