Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59309 * 124.70838 * 4 3 2 6 6 C 1.36595 * 106.83881 * 179.85454 * 5 4 3 7 7 C 1.47527 * 125.77268 * 180.18299 * 6 5 4 8 8 O 1.21592 * 119.99730 * 0.30699 * 7 6 5 9 9 N 1.34780 * 119.99941 * 180.30218 * 7 6 5 10 10 C 1.46496 * 119.99736 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46907 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46979 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99807 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00069 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99896 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47325 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00251 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00028 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00100 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99867 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46995 * 89.99815 * 21 19 17 23 23 H 1.48502 * 109.46956 * 209.99407 * 21 19 17 24 24 H 1.48495 * 109.47198 * 329.99764 * 21 19 17 25 25 N 1.34400 * 108.45728 * 0.42161 * 6 5 4 26 26 N 1.28758 * 109.52493 * 359.74123 * 25 6 5 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.07999 * 126.58097 * 0.02562 * 5 4 3 35 35 H 0.96998 * 119.99858 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.47449 * 300.00731 * 10 9 7 37 37 H 1.08997 * 109.47022 * 60.00933 * 10 9 7 38 38 H 1.08996 * 109.47366 * 300.00418 * 11 10 9 39 39 H 1.08997 * 109.46814 * 60.00442 * 11 10 9 40 40 H 0.96995 * 119.99842 * 0.02562 * 12 11 10 41 41 H 1.09004 * 109.47207 * 300.00204 * 15 13 12 42 42 H 1.09001 * 109.47268 * 60.00160 * 15 13 12 43 43 H 0.96998 * 120.00484 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3082 2.0591 -0.8906 6 6 5.5939 1.7990 -0.5098 7 6 6.8098 2.2788 -1.1938 8 8 6.7144 2.9750 -2.1861 9 7 8.0263 1.9454 -0.7188 10 6 9.2336 2.4214 -1.3984 11 6 10.4709 1.9040 -0.6619 12 7 11.6783 2.3806 -1.3412 13 6 12.8948 2.0473 -0.8661 14 8 12.9898 1.3526 0.1235 15 6 14.1368 2.5380 -1.5644 16 16 15.6005 1.9258 -0.6933 17 6 16.8687 2.6297 -1.6938 18 1 16.6080 3.2321 -2.5514 19 6 18.2027 2.4099 -1.3798 20 7 19.1501 2.9352 -2.1274 21 14 18.6535 1.3672 0.1032 22 1 18.7739 -0.0543 -0.3094 23 1 19.9493 1.8324 0.6598 24 1 17.5960 1.4946 1.1378 25 7 5.5641 1.0277 0.5904 26 7 4.3413 0.7963 0.9207 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.9952 2.6481 -1.7400 35 1 8.1023 1.3898 0.0726 36 1 9.2418 2.0540 -2.4245 37 1 9.2423 3.5114 -1.4027 38 1 10.4629 2.2712 0.3643 39 1 10.4620 0.8141 -0.6580 40 1 11.6022 2.9365 -2.1324 41 1 14.1454 2.1712 -2.5909 42 1 14.1451 3.6279 -1.5680 43 1 20.0823 2.7813 -1.9082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736673099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 13.244495 kcal Electronic energy + Delta-G solvation = -24879.220172 eV Core-core repulsion = 20894.785760 eV Total energy + Delta-G solvation = -3984.434412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.71375 -39.86494 -39.20659 -36.63975 -36.04013 -34.06802 -33.22228 -32.42997 -31.54361 -30.30295 -28.33946 -27.48860 -25.60850 -24.32847 -23.45706 -22.56275 -22.15345 -20.97184 -20.34650 -18.73628 -17.87217 -16.89830 -16.75201 -16.70384 -16.18196 -16.05410 -15.70344 -15.64750 -15.16276 -15.06415 -14.92965 -14.35958 -14.26766 -14.00920 -13.72708 -13.41399 -13.29750 -12.85612 -12.78739 -12.69229 -12.48172 -12.26090 -12.08589 -11.84475 -11.74980 -11.55746 -11.25825 -10.99728 -10.88222 -10.65207 -10.57217 -9.85340 -9.83841 -9.58617 -9.45567 -9.07332 -8.98328 -8.49600 -6.91161 -6.27909 -3.99843 0.62519 1.24694 1.45495 2.46728 2.88157 2.88433 2.94133 3.33761 3.39157 3.51798 3.60989 3.66793 3.76898 3.95867 4.17579 4.30502 4.34227 4.37267 4.44999 4.50226 4.59623 4.74949 4.77193 4.80350 4.90974 5.11292 5.13245 5.21032 5.22763 5.29247 5.35424 5.43665 5.60876 5.69060 5.77556 5.80619 5.95956 6.02016 6.42701 7.00346 7.45766 7.53676 7.76022 7.95125 8.42749 8.44211 9.18305 10.81353 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.043229 B = 0.001358 C = 0.001325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.559915 B =20614.627953 C =21133.346298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.119 3.881 4 N -0.360 5.360 5 C 0.096 3.904 6 C -0.104 4.104 7 C 0.609 3.391 8 O -0.537 6.537 9 N -0.711 5.711 10 C 0.110 3.890 11 C 0.110 3.890 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.517 6.517 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 N -0.204 5.204 26 N -0.060 5.060 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.206 0.794 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.402 0.598 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.313 -1.746 1.444 40.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.061 4.061 6 C -0.244 4.244 7 C 0.393 3.607 8 O -0.413 6.413 9 N -0.363 5.363 10 C -0.014 4.014 11 C -0.015 4.015 12 N -0.390 5.390 13 C 0.319 3.681 14 O -0.391 6.391 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.670 4.670 18 H 0.107 0.893 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 N -0.078 5.078 26 N -0.040 5.040 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.222 0.778 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -39.996 -3.250 3.608 40.290 hybrid contribution 0.120 1.079 -1.572 1.911 sum -39.876 -2.170 2.036 39.987 Atomic orbital electron populations 1.21707 0.93684 1.03039 1.02410 1.21842 0.97121 0.94388 1.04332 1.22218 0.72237 1.00305 1.05362 1.50611 1.09002 1.35052 1.19792 1.23406 0.90095 0.96836 0.95792 1.21387 0.94430 1.09018 0.99516 1.16670 0.81606 0.79496 0.82924 1.90833 1.86635 1.38325 1.25493 1.45539 1.04806 1.53756 1.32214 1.21502 0.82683 1.00331 0.96911 1.21335 0.83048 1.00218 0.96887 1.45748 1.04915 1.55674 1.32648 1.20290 0.83869 0.79662 0.84314 1.90712 1.86467 1.36588 1.25335 1.23276 0.95774 1.04827 1.03582 1.84798 0.96584 1.69660 1.40478 1.22321 0.91619 1.37553 1.15464 0.89342 1.24703 0.95183 0.94817 0.96527 1.69935 1.00300 1.43256 1.38220 0.86741 0.79899 0.81194 0.84058 1.19200 1.19934 1.15907 1.74662 1.13114 1.09897 1.10098 1.82008 0.93247 1.16991 1.11767 0.92164 0.91514 0.92013 0.89936 0.90968 0.87543 0.88124 0.77770 0.75183 0.90271 0.90262 0.90713 0.90709 0.76321 0.88332 0.88287 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.13 9.91 37.16 0.37 0.23 16 2 C -0.14 -0.31 6.14 -26.73 -0.16 -0.48 16 3 C 0.12 0.23 6.54 -4.04 -0.03 0.20 16 4 N -0.36 -2.09 3.69 -61.06 -0.23 -2.32 16 5 C 0.10 0.59 11.27 -16.84 -0.19 0.40 16 6 C -0.10 -0.94 6.99 -83.55 -0.58 -1.52 16 7 C 0.61 6.18 7.82 -12.47 -0.10 6.08 16 8 O -0.54 -6.66 16.86 5.28 0.09 -6.57 16 9 N -0.71 -6.30 5.55 -61.35 -0.34 -6.64 16 10 C 0.11 0.94 5.79 -4.04 -0.02 0.91 16 11 C 0.11 1.13 5.79 -4.04 -0.02 1.10 16 12 N -0.73 -8.80 5.56 -60.29 -0.33 -9.14 16 13 C 0.53 9.21 7.85 -10.98 -0.09 9.12 16 14 O -0.52 -10.95 15.86 5.56 0.09 -10.87 16 15 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 21 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 N -0.20 -2.05 12.04 32.85 0.40 -1.66 16 26 N -0.06 -0.55 13.65 60.35 0.82 0.28 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.11 -0.07 8.08 -51.93 -0.42 -0.49 16 33 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.21 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.41 3.29 8.16 -40.82 -0.33 2.95 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 41 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -37.97 391.02 -6.11 -44.07 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.17 Total: -0.68 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.39 Total: 1.93 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 1.09 Total: -45.30 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.97 -6.11 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736673099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.318 kcal (2) G-P(sol) polarization free energy of solvation -37.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds