Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.95896 * 2 1 4 4 C 1.33237 * 109.82933 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.53028 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47148 * 90.00016 * 5 4 3 7 7 O 1.21283 * 119.99803 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.28037 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.52999 * 109.46992 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.47064 * 294.99977 * 10 9 8 12 12 C 1.52999 * 109.47323 * 175.00101 * 10 9 8 13 13 N 1.46500 * 109.47034 * 54.99899 * 10 9 8 14 14 C 1.34777 * 119.99849 * 204.99828 * 13 10 9 15 15 O 1.21281 * 120.00243 * 0.02562 * 14 13 10 16 16 C 1.50699 * 119.99906 * 179.97438 * 14 13 10 17 17 S 1.81002 * 109.47280 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99918 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00044 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99458 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00461 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99657 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46651 * 90.00045 * 22 20 18 24 24 H 1.48497 * 109.46970 * 209.99753 * 22 20 18 25 25 H 1.48495 * 109.47208 * 330.00247 * 22 20 18 26 26 N 1.30717 * 108.94756 * 0.26847 * 4 3 2 27 27 N 1.34424 * 125.96061 * 180.02562 * 2 1 3 28 28 H 0.97003 * 126.82602 * 359.96991 * 27 2 1 29 29 H 1.08994 * 109.47136 * 89.97235 * 1 2 3 30 30 H 1.08998 * 109.46903 * 209.97013 * 1 2 3 31 31 H 1.08999 * 109.47410 * 329.96892 * 1 2 3 32 32 H 1.09009 * 109.46601 * 330.00037 * 5 4 3 33 33 H 1.08998 * 109.47035 * 210.00545 * 5 4 3 34 34 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 35 35 H 1.08995 * 109.47421 * 299.99467 * 9 8 6 36 36 H 1.09001 * 109.47621 * 60.00103 * 9 8 6 37 37 H 1.09001 * 109.47082 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47063 * 300.00207 * 12 10 9 39 39 H 1.08999 * 109.47296 * 59.99809 * 12 10 9 40 40 H 0.96996 * 120.00430 * 25.00374 * 13 10 9 41 41 H 1.09003 * 109.47096 * 300.00389 * 16 14 13 42 42 H 1.09000 * 109.47147 * 60.00410 * 16 14 13 43 43 H 0.97004 * 119.99771 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1316 1.9343 1.4207 7 8 4.5139 1.4444 2.3424 8 7 6.1674 2.7606 1.6673 9 6 6.5470 3.0673 3.0486 10 6 7.7438 4.0204 3.0490 11 1 8.6091 3.5173 2.6171 12 6 8.0620 4.4390 4.4858 13 7 7.4225 5.2082 2.2540 14 6 8.4114 5.9282 1.6882 15 8 9.5673 5.5925 1.8368 16 6 8.0808 7.1497 0.8699 17 16 9.6103 7.8925 0.2495 18 6 8.9466 9.2586 -0.6438 19 1 7.8786 9.4156 -0.6753 20 6 9.7966 10.1334 -1.3061 21 7 11.0985 9.9429 -1.2665 22 14 9.0930 11.5814 -2.2538 23 1 8.9876 12.7578 -1.3536 24 1 9.9871 11.9086 -3.3934 25 1 7.7450 11.2288 -2.7674 26 7 3.6195 -0.6168 -0.0067 27 7 2.2964 -1.0881 -0.0005 28 1 2.0094 -2.0146 -0.0005 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 4.4699 2.5475 -0.5134 33 1 5.5741 1.1514 -0.5146 34 1 6.6616 3.1521 0.9301 35 1 5.7074 3.5378 3.5602 36 1 6.8167 2.1458 3.5645 37 1 8.9150 5.1177 4.4860 38 1 7.1968 4.9421 4.9176 39 1 8.3011 3.5553 5.0773 40 1 6.4980 5.4765 2.1348 41 1 7.4490 6.8637 0.0290 42 1 7.5523 7.8718 1.4923 43 1 11.6924 10.5541 -1.7298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737559348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 1.231399 kcal Electronic energy + Delta-G solvation = -25898.124580 eV Core-core repulsion = 21913.169241 eV Total energy + Delta-G solvation = -3984.955339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50062 -40.09325 -39.22226 -36.40045 -34.03752 -33.83258 -32.72244 -32.44365 -31.58763 -30.33945 -28.61492 -28.18423 -26.26559 -25.49687 -22.30524 -21.78814 -21.30623 -20.39353 -20.26056 -18.29686 -17.96614 -17.44655 -16.65534 -16.61088 -15.97919 -15.72277 -15.50918 -14.96759 -14.81732 -14.65505 -14.26370 -14.08716 -13.94271 -13.42988 -13.30312 -13.21671 -13.16006 -12.97927 -12.89743 -12.57395 -12.31398 -12.16050 -12.05639 -11.85040 -11.16525 -11.07549 -11.03783 -10.77116 -10.55959 -10.37002 -10.15514 -9.83378 -9.76947 -9.49644 -9.33338 -9.09434 -9.01888 -8.26179 -6.52177 -6.23345 -3.94101 1.22411 2.22773 2.38376 2.38907 2.92664 2.99979 3.08200 3.21597 3.27203 3.30958 3.58027 3.67177 4.13004 4.18921 4.35642 4.40737 4.60304 4.77802 4.89711 4.92052 5.01739 5.08103 5.12034 5.14750 5.23581 5.30009 5.35464 5.47594 5.54151 5.64218 5.85148 5.87275 5.92264 6.02840 6.04725 6.11392 6.19355 6.55728 6.67116 7.18878 7.58121 7.62706 7.74338 7.93729 8.33671 8.54158 9.22244 10.83958 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002028 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.738611 B =13803.652582 C =15479.997924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.252 3.748 5 C -0.051 4.051 6 C 0.524 3.476 7 O -0.532 6.532 8 N -0.727 5.727 9 C 0.115 3.885 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.162 4.162 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.155 4.155 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.305 5.305 27 N -0.482 5.482 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 -20.860 4.490 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.005 3.995 3 N -0.260 5.260 4 C -0.032 4.032 5 C -0.094 4.094 6 C 0.309 3.691 7 O -0.408 6.408 8 N -0.381 5.381 9 C -0.010 4.010 10 C 0.027 3.973 11 H 0.114 0.886 12 C -0.220 4.220 13 N -0.393 5.393 14 C 0.320 3.680 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.133 5.133 27 N -0.200 5.200 28 H 0.285 0.715 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.762 -21.737 5.349 28.577 hybrid contribution -2.311 1.012 -1.130 2.764 sum -20.073 -20.726 4.220 29.160 Atomic orbital electron populations 1.20404 0.83550 1.05142 1.04577 1.24381 0.96647 0.82731 0.95701 1.70302 1.01230 1.29567 1.24853 1.23213 0.92617 0.89703 0.97624 1.19907 0.94024 0.99319 0.96128 1.20163 0.79829 0.78482 0.90660 1.90738 1.52617 1.51307 1.46172 1.45907 1.33741 1.49060 1.09352 1.21705 0.97074 0.99090 0.83088 1.21143 0.97475 0.85798 0.92929 0.88608 1.22116 1.02806 1.02330 0.94788 1.46161 1.10057 1.28821 1.54256 1.20340 0.85138 0.83874 0.78682 1.90712 1.19571 1.68985 1.59560 1.23544 1.07777 0.97510 1.01686 1.85398 1.02280 1.31087 1.64540 1.22863 0.95471 1.12972 1.37086 0.90909 1.24994 0.94659 0.97883 0.96051 1.70016 1.02165 1.36941 1.41141 0.86172 0.78840 0.81374 0.79143 1.20280 1.20762 1.19675 1.77978 0.96770 1.12193 1.26407 1.47928 1.04224 1.10038 1.57844 0.71476 0.88902 0.89849 0.88233 0.85597 0.86150 0.75765 0.90722 0.89999 0.91020 0.92188 0.91535 0.76664 0.89166 0.89205 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.28 2.42 8.24 -155.70 -1.28 1.13 16 3 N -0.53 -6.26 11.19 -8.16 -0.09 -6.35 16 4 C 0.25 2.98 6.63 -156.85 -1.04 1.94 16 5 C -0.05 -0.47 6.33 -29.03 -0.18 -0.65 16 6 C 0.52 5.77 7.82 -10.98 -0.09 5.69 16 7 O -0.53 -8.03 16.03 5.55 0.09 -7.94 16 8 N -0.73 -6.49 5.39 -60.30 -0.32 -6.82 16 9 C 0.11 1.03 5.23 -4.04 -0.02 1.01 16 10 C 0.13 1.35 2.73 -67.93 -0.19 1.16 16 11 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 12 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 13 N -0.74 -8.54 4.52 -53.80 -0.24 -8.78 16 14 C 0.53 9.01 7.81 -10.99 -0.09 8.92 16 15 O -0.51 -10.78 15.52 5.56 0.09 -10.69 16 16 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 22 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 N -0.30 -3.60 12.80 32.42 0.41 -3.18 16 27 N -0.48 -3.98 7.45 32.62 0.24 -3.74 16 28 H 0.44 1.88 8.96 -182.33 -1.63 0.25 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.13 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.41 3.15 8.14 -40.82 -0.33 2.82 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 41 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -40.04 390.60 -9.50 -49.55 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.33 Total: 2.11 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.73 Total: 2.70 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.73 Total: -53.92 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.04 -9.50 -49.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737559348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.779 kcal (2) G-P(sol) polarization free energy of solvation -40.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds