Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09003 * 109.47117 * 54.99636 * 3 2 1 5 5 C 1.52997 * 109.47451 * 174.99809 * 3 2 1 6 6 N 1.46505 * 109.47555 * 174.99915 * 5 3 2 7 7 C 1.34767 * 120.00303 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00241 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47370 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00174 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99599 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00039 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99852 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99642 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47224 * 60.00247 * 15 13 11 17 17 H 1.48497 * 109.46668 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47365 * 299.99678 * 15 13 11 19 19 N 1.46504 * 109.46966 * 295.00261 * 3 2 1 20 20 C 1.34772 * 120.00086 * 85.00271 * 19 3 2 21 21 O 1.21283 * 120.00122 * 359.97438 * 20 19 3 22 22 C 1.50703 * 119.99767 * 180.02562 * 20 19 3 23 23 N 1.46506 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.34424 * 126.82028 * 125.00177 * 23 22 20 25 25 N 1.30835 * 108.07649 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.83029 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94316 * 359.75029 * 26 25 24 28 28 H 1.08994 * 109.47279 * 59.99728 * 1 2 3 29 29 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47003 * 299.99821 * 1 2 3 31 31 H 1.09001 * 109.47003 * 240.00179 * 2 1 3 32 32 H 1.09001 * 109.47233 * 119.99904 * 2 1 3 33 33 H 1.08999 * 109.47418 * 294.99966 * 5 3 2 34 34 H 1.09003 * 109.47071 * 55.00035 * 5 3 2 35 35 H 0.97005 * 119.99042 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47174 * 299.99908 * 9 7 6 37 37 H 1.09003 * 109.46983 * 59.99537 * 9 7 6 38 38 H 0.97008 * 119.99362 * 180.02562 * 14 13 11 39 39 H 0.96997 * 119.99399 * 264.99524 * 19 3 2 40 40 H 1.08999 * 109.47353 * 59.99471 * 22 20 19 41 41 H 1.09000 * 109.47019 * 299.99125 * 22 20 19 42 42 H 1.07997 * 125.96622 * 359.97438 * 24 23 22 43 43 H 1.07993 * 125.52851 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1635 2.1483 0.2574 9 6 5.8982 4.4748 -0.0368 10 16 7.7022 4.4768 0.1103 11 6 8.0215 6.2008 -0.0637 12 1 7.2027 6.8894 -0.2109 13 6 9.3254 6.6739 -0.0115 14 7 10.3232 5.8346 0.1684 15 14 9.6639 8.5016 -0.1967 16 1 8.9688 9.2458 0.8841 17 1 11.1258 8.7459 -0.1056 18 1 9.1664 8.9660 -1.5166 19 7 1.6524 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3396 2.6320 -0.4343 22 6 0.0363 3.3376 -2.6548 23 7 -1.3226 3.8700 -2.5270 24 6 -1.7141 5.1386 -2.7378 25 7 -3.0024 5.2074 -2.5205 26 6 -3.4663 4.0085 -2.1702 27 7 -2.4761 3.1553 -2.1649 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8499 1.0377 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5483 -0.1308 36 1 5.6128 4.8820 -1.0068 37 1 5.4680 5.0876 0.7554 38 1 11.2344 6.1653 0.2052 39 1 2.2719 2.1231 -1.9977 40 1 0.0673 2.6130 -3.4684 41 1 0.7276 4.1530 -2.8679 42 1 -1.0764 5.9581 -3.0347 43 1 -4.4945 3.7780 -1.9337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738104470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 20.874469 kcal Electronic energy + Delta-G solvation = -26492.405081 eV Core-core repulsion = 22508.301529 eV Total energy + Delta-G solvation = -3984.103552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.41063 -40.55762 -39.21091 -36.89129 -34.46270 -33.94626 -32.82652 -32.48820 -31.51364 -30.23662 -28.78456 -27.62630 -25.54566 -23.62016 -22.97718 -22.32671 -21.51448 -20.95616 -20.38894 -18.18252 -17.90724 -17.67757 -16.79731 -16.48923 -16.32914 -15.84499 -15.55859 -15.30409 -15.05042 -14.85763 -14.49748 -14.30584 -14.05556 -13.90336 -13.72446 -13.46275 -13.07715 -13.04705 -12.67672 -12.43809 -12.21455 -11.90180 -11.82415 -11.46702 -11.17790 -11.10792 -11.08666 -10.82219 -10.68365 -10.35737 -10.10368 -9.91101 -9.89278 -9.61765 -9.46859 -9.13408 -9.06402 -8.31836 -6.57323 -6.27408 -3.98821 1.24708 1.75114 2.04832 2.57991 2.68370 2.91535 2.96967 3.19052 3.23084 3.25726 3.58934 3.90892 3.98942 4.10339 4.14708 4.27518 4.40053 4.51807 4.62411 4.73707 4.88044 5.02605 5.05731 5.07930 5.18664 5.39646 5.44501 5.54131 5.67808 5.71131 5.77842 5.78297 5.83397 6.00291 6.03527 6.09222 6.15621 6.33921 6.41751 6.91876 7.52022 7.53986 7.66235 7.74406 8.28871 8.46439 9.17866 10.79886 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002256 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.179783 B =12407.422097 C =14449.965912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.138 3.862 4 H 0.097 0.903 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.274 1.274 19 N -0.723 5.723 20 C 0.501 3.499 21 O -0.500 6.500 22 C 0.109 3.891 23 N -0.371 5.371 24 C 0.257 3.743 25 N -0.544 5.544 26 C 0.193 3.807 27 N -0.291 5.291 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.404 0.596 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.220 0.780 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.456 -7.102 -7.191 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.033 3.967 4 H 0.115 0.885 5 C -0.012 4.012 6 N -0.396 5.396 7 C 0.318 3.682 8 O -0.388 6.388 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.686 4.686 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.377 5.377 20 C 0.284 3.716 21 O -0.373 6.373 22 C -0.018 4.018 23 N -0.162 5.162 24 C -0.040 4.040 25 N -0.271 5.271 26 C -0.110 4.110 27 N -0.117 5.117 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.239 0.761 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.236 0.764 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.727 -9.195 -6.039 25.249 hybrid contribution -0.364 2.690 -0.790 2.827 sum -23.091 -6.505 -6.829 24.943 Atomic orbital electron populations 1.21772 0.94343 1.00809 1.03066 1.21898 0.97289 0.94916 1.02991 1.21362 0.93713 0.94435 0.87190 0.88538 1.21600 0.91216 0.84761 1.03587 1.45991 1.07835 1.08762 1.76971 1.20335 0.81309 0.91173 0.75372 1.90719 1.55411 1.46160 1.46531 1.23529 1.06995 0.95067 1.04836 1.85416 0.91787 1.10975 1.95053 1.22811 0.95420 0.92351 1.57971 0.90984 1.24993 0.95068 0.98988 0.94500 1.70002 0.99559 1.34673 1.45977 0.86222 0.77434 0.82996 0.78839 1.19919 1.20779 1.19933 1.46004 1.16313 1.58094 1.17313 1.20362 0.82232 0.79459 0.89544 1.90838 1.50164 1.56953 1.39385 1.21599 0.80084 1.02084 0.97996 1.49968 1.07298 1.07755 1.51208 1.26130 0.92905 0.87997 0.96967 1.70547 1.08416 1.25232 1.22889 1.26023 1.00088 0.86472 0.98425 1.78173 0.91608 1.20221 1.21704 0.92449 0.93417 0.92225 0.91368 0.90488 0.89864 0.90776 0.76838 0.89279 0.89241 0.92070 0.76062 0.86293 0.84907 0.76373 0.76773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.51 37.16 0.32 -0.94 16 2 C -0.13 -0.93 5.61 -26.73 -0.15 -1.08 16 3 C 0.14 1.00 2.42 -67.93 -0.16 0.83 16 4 H 0.10 0.87 7.58 -51.93 -0.39 0.48 16 5 C 0.11 1.03 5.23 -4.04 -0.02 1.01 16 6 N -0.74 -8.12 5.39 -60.29 -0.32 -8.45 16 7 C 0.53 8.89 7.85 -10.99 -0.09 8.80 16 8 O -0.51 -10.79 15.86 5.56 0.09 -10.70 16 9 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 10 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 11 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 12 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 15 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 N -0.72 -4.00 4.47 -53.81 -0.24 -4.24 16 20 C 0.50 3.62 6.44 -10.99 -0.07 3.54 16 21 O -0.50 -5.82 12.89 5.55 0.07 -5.75 16 22 C 0.11 0.47 7.03 -5.19 -0.04 0.44 16 23 N -0.37 -2.94 3.40 -63.81 -0.22 -3.16 16 24 C 0.26 1.86 12.63 -90.66 -1.14 0.71 16 25 N -0.54 -5.40 11.19 -15.84 -0.18 -5.57 16 26 C 0.19 1.85 13.03 -91.82 -1.20 0.66 16 27 N -0.29 -3.12 11.83 29.29 0.35 -2.78 16 28 H 0.06 0.57 5.64 -51.93 -0.29 0.28 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.45 8.14 -40.82 -0.33 3.12 16 36 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.40 1.40 8.60 -40.82 -0.35 1.05 16 40 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.13 0.08 8.09 -51.93 -0.42 -0.34 16 42 H 0.22 0.57 8.06 -52.49 -0.42 0.14 16 43 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -39.57 382.85 -9.29 -48.85 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.97 Total: -0.02 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.13 Total: -1.21 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.12 Total: -49.01 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.16 Total: -16.45 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.57 -9.29 -48.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.728 kcal (2) G-P(sol) polarization free energy of solvation -39.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds