Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09003 * 109.47117 * 54.99636 * 3 2 1 5 5 C 1.52997 * 109.47451 * 174.99809 * 3 2 1 6 6 N 1.46505 * 109.47555 * 174.99915 * 5 3 2 7 7 C 1.34767 * 120.00303 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00241 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47370 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00174 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99599 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00039 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99852 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99642 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47224 * 60.00247 * 15 13 11 17 17 H 1.48497 * 109.46668 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47365 * 299.99678 * 15 13 11 19 19 N 1.46504 * 109.46966 * 295.00261 * 3 2 1 20 20 C 1.34772 * 120.00086 * 85.00271 * 19 3 2 21 21 O 1.21283 * 120.00122 * 359.97438 * 20 19 3 22 22 C 1.50703 * 119.99767 * 180.02562 * 20 19 3 23 23 N 1.46506 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.34424 * 126.82028 * 125.00177 * 23 22 20 25 25 N 1.30835 * 108.07649 * 179.97438 * 24 23 22 26 26 C 1.33238 * 109.83029 * 0.02562 * 25 24 23 27 27 N 1.30712 * 108.94316 * 359.75029 * 26 25 24 28 28 H 1.08994 * 109.47279 * 59.99728 * 1 2 3 29 29 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47003 * 299.99821 * 1 2 3 31 31 H 1.09001 * 109.47003 * 240.00179 * 2 1 3 32 32 H 1.09001 * 109.47233 * 119.99904 * 2 1 3 33 33 H 1.08999 * 109.47418 * 294.99966 * 5 3 2 34 34 H 1.09003 * 109.47071 * 55.00035 * 5 3 2 35 35 H 0.97005 * 119.99042 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47174 * 299.99908 * 9 7 6 37 37 H 1.09003 * 109.46983 * 59.99537 * 9 7 6 38 38 H 0.97008 * 119.99362 * 180.02562 * 14 13 11 39 39 H 0.96997 * 119.99399 * 264.99524 * 19 3 2 40 40 H 1.08999 * 109.47353 * 59.99471 * 22 20 19 41 41 H 1.09000 * 109.47019 * 299.99125 * 22 20 19 42 42 H 1.07997 * 125.96622 * 359.97438 * 24 23 22 43 43 H 1.07993 * 125.52851 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0631 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1635 2.1483 0.2574 9 6 5.8982 4.4748 -0.0368 10 16 7.7022 4.4768 0.1103 11 6 8.0215 6.2008 -0.0637 12 1 7.2027 6.8894 -0.2109 13 6 9.3254 6.6739 -0.0115 14 7 10.3232 5.8346 0.1684 15 14 9.6639 8.5016 -0.1967 16 1 8.9688 9.2458 0.8841 17 1 11.1258 8.7459 -0.1056 18 1 9.1664 8.9660 -1.5166 19 7 1.6524 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3396 2.6320 -0.4343 22 6 0.0363 3.3376 -2.6548 23 7 -1.3226 3.8700 -2.5270 24 6 -1.7141 5.1386 -2.7378 25 7 -3.0024 5.2074 -2.5205 26 6 -3.4663 4.0085 -2.1702 27 7 -2.4761 3.1553 -2.1649 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8499 1.0377 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5483 -0.1308 36 1 5.6128 4.8820 -1.0068 37 1 5.4680 5.0876 0.7554 38 1 11.2344 6.1653 0.2052 39 1 2.2719 2.1231 -1.9977 40 1 0.0673 2.6130 -3.4684 41 1 0.7276 4.1530 -2.8679 42 1 -1.0764 5.9581 -3.0347 43 1 -4.4945 3.7780 -1.9337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738104470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -8.088972 kcal Electronic energy + Delta-G solvation = -26493.661030 eV Core-core repulsion = 22508.301529 eV Total energy + Delta-G solvation = -3985.359501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.97682 -41.25041 -40.39359 -37.68724 -35.04529 -34.95371 -34.56471 -33.43251 -32.12411 -31.46632 -29.54676 -28.41784 -27.61020 -24.44194 -23.58256 -22.87850 -22.17974 -21.60298 -21.49982 -19.85902 -18.52938 -18.40689 -17.73644 -17.45148 -17.17086 -16.86072 -16.72395 -16.42098 -16.19500 -15.82348 -15.67212 -15.03170 -14.85021 -14.79929 -14.61523 -14.45252 -14.37386 -14.02329 -13.63247 -13.42247 -13.15135 -13.02511 -12.84951 -12.76753 -12.64285 -12.50848 -12.18746 -11.83846 -11.72681 -11.29045 -11.11389 -10.98765 -10.97317 -10.74402 -10.48123 -10.25304 -10.16748 -10.11117 -8.64347 -8.33115 -6.10596 0.70150 1.28302 1.32228 1.44952 1.48448 1.53441 1.57603 1.62581 2.02617 2.10564 2.26924 2.31130 3.01282 3.33560 3.49339 3.55966 3.57967 3.75171 3.90838 4.02820 4.10131 4.11083 4.18274 4.31258 4.37743 4.43263 4.52204 4.54087 4.67460 4.78352 4.90654 5.05048 5.12095 5.27837 5.35581 5.41218 5.43491 5.46859 5.49461 5.88553 6.21102 6.44944 6.47529 7.08619 7.14119 7.19415 7.23337 8.75544 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002256 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.179783 B =12407.422097 C =14449.965912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.151 3.849 4 H 0.081 0.919 5 C 0.117 3.883 6 N -0.711 5.711 7 C 0.537 3.463 8 O -0.563 6.563 9 C -0.130 4.130 10 S -0.151 6.151 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.996 3.004 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.260 1.260 19 N -0.710 5.710 20 C 0.500 3.500 21 O -0.549 6.549 22 C 0.105 3.895 23 N -0.374 5.374 24 C 0.262 3.738 25 N -0.579 5.579 26 C 0.182 3.818 27 N -0.330 5.330 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.270 0.730 39 H 0.419 0.581 40 H 0.142 0.858 41 H 0.180 0.820 42 H 0.263 0.737 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.230 -5.626 -8.677 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.046 3.954 4 H 0.099 0.901 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.441 6.441 9 C -0.281 4.281 10 S 0.076 5.924 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.184 1.184 19 N -0.366 5.366 20 C 0.285 3.715 21 O -0.425 6.425 22 C -0.019 4.019 23 N -0.165 5.165 24 C -0.034 4.034 25 N -0.307 5.307 26 C -0.121 4.121 27 N -0.158 5.158 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.250 0.750 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.159 0.841 41 H 0.197 0.803 42 H 0.279 0.721 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -23.532 -7.721 -7.559 25.894 hybrid contribution -0.229 2.155 -0.327 2.191 sum -23.761 -5.566 -7.886 25.647 Atomic orbital electron populations 1.21659 0.95489 1.00558 1.01429 1.21868 0.95964 0.94837 1.03979 1.21080 0.92009 0.94668 0.87646 0.90068 1.21675 0.92171 0.83308 1.03536 1.45667 1.05963 1.10347 1.74586 1.20000 0.82687 0.89755 0.75311 1.90715 1.57056 1.47066 1.49213 1.23373 1.00864 0.97056 1.06849 1.85595 0.99572 1.11792 1.95464 1.23167 0.96072 0.92593 1.57486 0.89829 1.26102 0.94833 1.04285 0.93936 1.70173 1.00017 1.37150 1.47409 0.85037 0.77262 0.76423 0.79496 1.18873 1.20653 1.18435 1.45867 1.16302 1.57318 1.17065 1.20879 0.81792 0.78816 0.89975 1.90836 1.51525 1.58827 1.41313 1.22010 0.79181 1.04155 0.96593 1.50131 1.07712 1.07911 1.50789 1.26967 0.92662 0.88596 0.95170 1.70533 1.10156 1.25675 1.24346 1.26440 1.00906 0.86533 0.98192 1.78080 0.92845 1.21767 1.23063 0.93596 0.92895 0.94340 0.89996 0.89939 0.90655 0.90040 0.74984 0.86631 0.87691 0.92059 0.74385 0.84074 0.80326 0.72115 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.51 71.98 0.61 -1.67 16 2 C -0.13 -1.59 5.61 30.59 0.17 -1.42 16 3 C 0.15 1.91 2.42 44.99 0.11 2.01 16 4 H 0.08 1.36 7.58 -2.39 -0.02 1.34 16 5 C 0.12 1.88 5.23 86.38 0.45 2.33 16 6 N -0.71 -13.73 5.39 -463.07 -2.49 -16.23 16 7 C 0.54 17.07 7.85 87.66 0.69 17.76 16 8 O -0.56 -23.48 15.86 -3.04 -0.05 -23.53 16 9 C -0.13 -4.60 6.16 71.24 0.44 -4.17 16 10 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 11 C -0.55 -29.79 9.50 67.95 0.65 -29.15 16 12 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -54.54 13.22 21.65 0.29 -54.26 16 15 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 19 N -0.71 -5.87 4.47 -442.53 -1.98 -7.85 16 20 C 0.50 6.11 6.44 87.66 0.56 6.67 16 21 O -0.55 -12.38 12.89 -3.04 -0.04 -12.42 16 22 C 0.11 0.56 7.03 85.63 0.60 1.16 16 23 N -0.37 -5.17 3.40 -355.79 -1.21 -6.38 16 24 C 0.26 3.16 12.63 180.36 2.28 5.44 16 25 N -0.58 -10.96 11.19 -204.01 -2.28 -13.24 16 26 C 0.18 3.49 13.03 180.77 2.36 5.85 16 27 N -0.33 -6.98 11.83 -61.25 -0.72 -7.70 16 28 H 0.04 0.89 5.64 -2.39 -0.01 0.88 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.81 7.85 -2.39 -0.02 0.79 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.41 5.69 8.14 -92.70 -0.75 4.93 16 36 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 39 H 0.42 1.28 8.60 -92.71 -0.80 0.48 16 40 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.18 -0.75 8.09 -2.39 -0.02 -0.77 16 42 H 0.26 0.29 8.06 -2.91 -0.02 0.27 16 43 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -90.70 382.85 1.26 -89.44 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.50 Total: 11.17 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 9.38 Total: 6.03 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -8.40 Total: -105.65 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.09 Total: -35.95 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -90.70 1.26 -89.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738104470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.349 kcal (2) G-P(sol) polarization free energy of solvation -90.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds