Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34942 * 126.04196 * 2 1 4 4 C 1.35317 * 107.75259 * 180.14908 * 3 2 1 5 5 S 1.76199 * 126.04169 * 179.87515 * 4 3 2 6 6 O 1.42101 * 106.39936 * 156.17409 * 5 4 3 7 7 O 1.42095 * 106.40084 * 23.24943 * 5 4 3 8 8 N 1.65605 * 107.21484 * 269.71064 * 5 4 3 9 9 C 1.46495 * 120.00049 * 65.00302 * 8 5 4 10 10 C 1.52997 * 109.47129 * 164.99942 * 9 8 5 11 11 N 1.46903 * 109.47276 * 174.87410 * 10 9 8 12 12 C 1.46906 * 111.00159 * 75.68331 * 11 10 9 13 13 C 1.50697 * 109.46877 * 190.00171 * 12 11 10 14 14 H 1.07998 * 120.00568 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99584 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46908 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46820 * 120.00097 * 17 15 13 20 20 H 1.48497 * 109.47277 * 240.00272 * 17 15 13 21 21 C 1.46899 * 111.00122 * 199.64031 * 11 10 9 22 22 C 1.52998 * 109.47038 * 75.79083 * 21 11 10 23 23 C 1.47202 * 109.47143 * 174.87210 * 22 21 11 24 24 N 9.74708 * 110.57815 * 89.50129 * 3 1 2 25 25 C 1.39876 * 107.91484 * 359.60907 * 4 3 2 26 26 N 1.30834 * 108.20273 * 0.23978 * 25 4 3 27 27 H 1.08993 * 109.46914 * 270.26192 * 1 2 3 28 28 H 1.09000 * 109.46875 * 30.26375 * 1 2 3 29 29 H 1.09004 * 109.46883 * 150.25927 * 1 2 3 30 30 H 1.08006 * 126.12253 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99434 * 244.99655 * 8 5 4 32 32 H 1.09004 * 109.46852 * 284.99903 * 9 8 5 33 33 H 1.09001 * 109.47058 * 44.99369 * 9 8 5 34 34 H 1.09001 * 109.47123 * 294.87026 * 10 9 8 35 35 H 1.08994 * 109.47343 * 54.87066 * 10 9 8 36 36 H 1.08995 * 109.47024 * 310.00548 * 12 11 10 37 37 H 1.09001 * 109.46633 * 70.00327 * 12 11 10 38 38 H 0.97000 * 119.99469 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46959 * 195.79532 * 21 11 10 40 40 H 1.08998 * 109.47017 * 315.79413 * 21 11 10 41 41 H 1.08996 * 109.47697 * 294.87474 * 22 21 11 42 42 H 1.09009 * 109.46883 * 54.87707 * 22 21 11 43 43 H 1.07996 * 125.89614 * 180.26284 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5438 0.6665 -0.0034 5 16 4.9752 1.6939 -0.0079 6 8 6.0298 0.9150 0.5403 7 8 4.5724 2.9456 0.5306 8 7 5.3736 1.9723 -1.5910 9 6 4.4634 2.7303 -2.4530 10 6 5.2040 3.1656 -3.7191 11 7 4.2616 3.8183 -4.6377 12 6 3.9403 5.1780 -4.1839 13 6 2.7972 5.7231 -5.0007 14 1 2.3534 5.1197 -5.7788 15 6 2.3178 6.9922 -4.7546 16 7 2.8585 7.7272 -3.8074 17 14 0.9013 7.6683 -5.7675 18 1 0.4747 6.6516 -6.7623 19 1 -0.2378 7.9918 -4.8714 20 1 1.3406 8.8986 -6.4736 21 6 4.7872 3.8315 -6.0094 22 6 4.6487 2.4364 -6.6221 23 6 5.0606 2.4778 -8.0347 24 7 5.3785 2.5097 -9.1248 25 6 3.5347 -0.7322 0.0036 26 7 2.2892 -1.1328 0.0057 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 1.9282 2.1193 -0.0004 31 1 6.2098 1.6336 -1.9474 32 1 3.6148 2.1029 -2.7260 33 1 4.1070 3.6114 -1.9194 34 1 5.9965 3.8654 -3.4539 35 1 5.6383 2.2917 -4.2045 36 1 3.6555 5.1522 -3.1321 37 1 4.8135 5.8184 -4.3083 38 1 2.5214 8.6202 -3.6346 39 1 4.2245 4.5485 -6.6072 40 1 5.8387 4.1182 -5.9928 41 1 5.2833 1.7362 -6.0789 42 1 3.6101 2.1120 -6.5559 43 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072605335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = 36.065681 kcal Electronic energy + Delta-G solvation = -27204.576351 eV Core-core repulsion = 23221.131540 eV Total energy + Delta-G solvation = -3983.444811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48497 -37.89366 -37.07782 -36.34554 -35.72880 -34.83978 -33.67023 -32.75735 -31.05910 -30.70035 -28.44495 -27.31358 -26.17087 -23.21895 -22.69428 -22.17064 -21.52558 -20.19959 -19.29894 -18.15449 -17.36243 -17.32301 -16.46669 -16.14789 -15.94170 -15.78452 -15.21813 -14.91509 -14.72852 -14.63793 -14.29935 -13.98258 -13.52617 -13.44176 -13.30376 -13.16591 -13.06125 -12.61278 -12.35929 -12.24853 -12.05372 -12.04170 -11.92081 -11.82338 -11.74179 -11.54678 -11.16741 -10.98490 -10.81647 -10.76753 -10.61378 -10.36766 -9.95111 -9.86821 -9.48111 -9.33565 -9.28861 -8.53749 -7.55575 -6.12096 -4.14517 0.53916 1.35143 2.07933 2.14092 2.91645 2.96194 3.20985 3.24674 3.33620 3.36500 3.87344 4.03607 4.12494 4.35600 4.41370 4.59914 4.77338 4.79330 4.91187 5.06000 5.13766 5.22464 5.26129 5.26665 5.31792 5.39338 5.46444 5.67686 5.82112 5.85114 6.11379 6.12820 6.22738 6.33562 6.46937 6.48866 6.98092 7.11572 7.17081 7.19908 7.65339 7.73814 7.87215 8.00627 8.35608 8.93007 9.50640 10.98326 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.003364 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.354233 B = 8320.641203 C = 9379.124860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.363 5.363 3 C 0.184 3.816 4 C -0.817 4.817 5 S 2.730 3.270 6 O -0.968 6.968 7 O -0.959 6.959 8 N -1.117 6.117 9 C 0.121 3.879 10 C 0.045 3.955 11 N -0.533 5.533 12 C 0.189 3.811 13 C -0.514 4.514 14 H 0.065 0.935 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.066 3.934 22 C -0.027 4.027 23 C 0.218 3.782 24 N -0.455 5.455 25 C 0.134 3.866 26 N -0.297 5.297 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.196 0.804 31 H 0.415 0.585 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.039 0.961 37 H -0.004 1.004 38 H 0.262 0.738 39 H 0.097 0.903 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -15.564 7.790 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.140 5.140 3 C 0.030 3.970 4 C -0.915 4.915 5 S 2.817 3.183 6 O -0.958 6.958 7 O -0.948 6.948 8 N -0.877 5.877 9 C -0.005 4.005 10 C -0.085 4.085 11 N -0.258 5.258 12 C 0.065 3.935 13 C -0.552 4.552 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.064 4.064 22 C -0.067 4.067 23 C -0.100 4.100 24 N -0.133 5.133 25 C -0.056 4.056 26 N -0.116 5.116 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.213 0.787 31 H 0.249 0.751 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.730 -16.269 7.053 17.816 hybrid contribution 0.043 1.114 -0.528 1.234 sum -1.688 -15.155 6.525 16.586 Atomic orbital electron populations 1.22103 0.73361 1.05525 1.04092 1.49096 1.07462 1.03975 1.53437 1.22627 0.89216 0.94453 0.90722 1.31676 1.16663 1.09023 1.34143 1.00714 0.72600 0.73102 0.71925 1.93558 1.53840 1.72105 1.76313 1.93603 1.83677 1.41029 1.76527 1.55457 1.31323 1.69657 1.31301 1.21299 0.91595 0.95835 0.91734 1.22205 0.94372 0.98779 0.93114 1.61969 1.40017 1.23958 0.99823 1.19863 0.95735 0.80993 0.96941 1.21156 1.16412 0.99187 1.18451 0.91643 1.24967 0.97074 0.96944 0.95372 1.69959 1.41686 1.10399 1.31181 0.86509 0.82216 0.78958 0.80129 1.19670 1.21020 1.21139 1.21889 0.98703 0.94142 0.91712 1.19426 1.04088 1.01096 0.82125 1.29367 0.92720 0.92677 0.95249 1.81173 1.10007 1.09103 1.12990 1.23514 0.95717 0.92150 0.94230 1.77412 1.01727 1.07759 1.24738 0.90052 0.88367 0.88691 0.78705 0.75103 0.91067 0.89567 0.94222 0.91329 0.94311 0.98651 0.92823 0.88422 0.94902 0.88239 0.86602 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.47 59.85 0.69 1.19 16 2 N -0.36 -3.58 4.01 -68.16 -0.27 -3.85 16 3 C 0.18 1.86 11.23 -17.23 -0.19 1.67 16 4 C -0.82 -8.96 6.14 -40.01 -0.25 -9.21 16 5 S 2.73 32.64 5.88 -107.50 -0.63 32.01 16 6 O -0.97 -13.35 17.87 -57.17 -1.02 -14.37 16 7 O -0.96 -14.78 17.31 -57.17 -0.99 -15.77 16 8 N -1.12 -11.56 6.00 -10.62 -0.06 -11.62 16 9 C 0.12 1.51 6.25 -4.05 -0.03 1.48 16 10 C 0.05 0.59 4.95 -3.82 -0.02 0.58 16 11 N -0.53 -8.75 4.36 -236.07 -1.03 -9.78 16 12 C 0.19 4.18 4.55 -4.97 -0.02 4.16 16 13 C -0.51 -12.69 8.23 -34.44 -0.28 -12.98 16 14 H 0.07 1.58 7.31 -52.49 -0.38 1.20 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 17 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.07 0.97 4.75 -3.83 -0.02 0.95 16 22 C -0.03 -0.30 5.75 -29.52 -0.17 -0.46 16 23 C 0.22 2.95 15.43 -20.76 -0.32 2.63 16 24 N -0.46 -7.40 18.54 42.15 0.78 -6.62 16 25 C 0.13 1.44 11.82 -17.36 -0.21 1.23 16 26 N -0.30 -3.46 12.58 30.62 0.39 -3.08 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.41 3.35 8.65 -34.47 -0.30 3.05 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.27 6.56 -51.93 -0.34 0.93 16 34 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 35 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 36 H 0.04 0.92 6.71 -51.93 -0.35 0.57 16 37 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.10 1.72 6.57 -51.93 -0.34 1.38 16 40 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.10 0.84 6.89 -51.93 -0.36 0.48 16 42 H 0.12 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -35.61 385.24 -7.99 -43.60 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.76 Total: -0.14 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.91 Total: -7.33 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.54 Total: -58.96 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -2.01 Total: -30.15 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 32.64 SS G_CDS: -0.63 Total: 32.01 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.61 -7.99 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072605335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds