Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34942 * 126.04196 * 2 1 4 4 C 1.35317 * 107.75259 * 180.14908 * 3 2 1 5 5 S 1.76199 * 126.04169 * 179.87515 * 4 3 2 6 6 O 1.42101 * 106.39936 * 156.17409 * 5 4 3 7 7 O 1.42095 * 106.40084 * 23.24943 * 5 4 3 8 8 N 1.65605 * 107.21484 * 269.71064 * 5 4 3 9 9 C 1.46495 * 120.00049 * 65.00302 * 8 5 4 10 10 C 1.52997 * 109.47129 * 164.99942 * 9 8 5 11 11 N 1.46903 * 109.47276 * 174.87410 * 10 9 8 12 12 C 1.46906 * 111.00159 * 75.68331 * 11 10 9 13 13 C 1.50697 * 109.46877 * 190.00171 * 12 11 10 14 14 H 1.07998 * 120.00568 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99584 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46908 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46820 * 120.00097 * 17 15 13 20 20 H 1.48497 * 109.47277 * 240.00272 * 17 15 13 21 21 C 1.46899 * 111.00122 * 199.64031 * 11 10 9 22 22 C 1.52998 * 109.47038 * 75.79083 * 21 11 10 23 23 C 1.47202 * 109.47143 * 174.87210 * 22 21 11 24 24 N 9.74708 * 110.57815 * 89.50129 * 3 1 2 25 25 C 1.39876 * 107.91484 * 359.60907 * 4 3 2 26 26 N 1.30834 * 108.20273 * 0.23978 * 25 4 3 27 27 H 1.08993 * 109.46914 * 270.26192 * 1 2 3 28 28 H 1.09000 * 109.46875 * 30.26375 * 1 2 3 29 29 H 1.09004 * 109.46883 * 150.25927 * 1 2 3 30 30 H 1.08006 * 126.12253 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99434 * 244.99655 * 8 5 4 32 32 H 1.09004 * 109.46852 * 284.99903 * 9 8 5 33 33 H 1.09001 * 109.47058 * 44.99369 * 9 8 5 34 34 H 1.09001 * 109.47123 * 294.87026 * 10 9 8 35 35 H 1.08994 * 109.47343 * 54.87066 * 10 9 8 36 36 H 1.08995 * 109.47024 * 310.00548 * 12 11 10 37 37 H 1.09001 * 109.46633 * 70.00327 * 12 11 10 38 38 H 0.97000 * 119.99469 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46959 * 195.79532 * 21 11 10 40 40 H 1.08998 * 109.47017 * 315.79413 * 21 11 10 41 41 H 1.08996 * 109.47697 * 294.87474 * 22 21 11 42 42 H 1.09009 * 109.46883 * 54.87707 * 22 21 11 43 43 H 1.07996 * 125.89614 * 180.26284 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5438 0.6665 -0.0034 5 16 4.9752 1.6939 -0.0079 6 8 6.0298 0.9150 0.5403 7 8 4.5724 2.9456 0.5306 8 7 5.3736 1.9723 -1.5910 9 6 4.4634 2.7303 -2.4530 10 6 5.2040 3.1656 -3.7191 11 7 4.2616 3.8183 -4.6377 12 6 3.9403 5.1780 -4.1839 13 6 2.7972 5.7231 -5.0007 14 1 2.3534 5.1197 -5.7788 15 6 2.3178 6.9922 -4.7546 16 7 2.8585 7.7272 -3.8074 17 14 0.9013 7.6683 -5.7675 18 1 0.4747 6.6516 -6.7623 19 1 -0.2378 7.9918 -4.8714 20 1 1.3406 8.8986 -6.4736 21 6 4.7872 3.8315 -6.0094 22 6 4.6487 2.4364 -6.6221 23 6 5.0606 2.4778 -8.0347 24 7 5.3785 2.5097 -9.1248 25 6 3.5347 -0.7322 0.0036 26 7 2.2892 -1.1328 0.0057 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 1.9282 2.1193 -0.0004 31 1 6.2098 1.6336 -1.9474 32 1 3.6148 2.1029 -2.7260 33 1 4.1070 3.6114 -1.9194 34 1 5.9965 3.8654 -3.4539 35 1 5.6383 2.2917 -4.2045 36 1 3.6555 5.1522 -3.1321 37 1 4.8135 5.8184 -4.3083 38 1 2.5214 8.6202 -3.6346 39 1 4.2245 4.5485 -6.6072 40 1 5.8387 4.1182 -5.9928 41 1 5.2833 1.7362 -6.0789 42 1 3.6101 2.1120 -6.5559 43 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072605335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = 7.454565 kcal Electronic energy + Delta-G solvation = -27205.817022 eV Core-core repulsion = 23221.131540 eV Total energy + Delta-G solvation = -3984.685482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24466 -39.14299 -38.14801 -37.49345 -36.80618 -35.94258 -34.60316 -34.32391 -32.24112 -31.49265 -29.88050 -27.90784 -27.62685 -24.79016 -23.87528 -22.98609 -22.26387 -21.50482 -20.25829 -19.00452 -18.57294 -18.36765 -18.14130 -17.14886 -16.79402 -16.59691 -16.48693 -16.11568 -15.96050 -15.58553 -15.41259 -15.07815 -14.84605 -14.59565 -14.11331 -14.04722 -13.84833 -13.71182 -13.63067 -13.40082 -13.34094 -13.14735 -13.13312 -13.00557 -12.89665 -12.65548 -12.59296 -12.44671 -12.24974 -12.12652 -11.72242 -11.68211 -11.41354 -11.09394 -10.63481 -10.54343 -10.31089 -10.19750 -8.97881 -8.10856 -6.18110 -0.41299 0.57735 1.27363 1.45338 1.48755 1.50332 1.58811 1.82173 1.90518 2.27875 2.47398 2.93890 3.03948 3.24167 3.25630 3.67049 3.77344 3.86258 4.11411 4.18072 4.22340 4.33252 4.40478 4.44170 4.51605 4.61306 4.68254 4.69941 4.80922 4.86300 5.04132 5.09228 5.22727 5.33172 5.37582 5.43360 5.44827 5.77232 5.81977 6.17003 6.27381 6.37339 6.40285 6.66137 6.73095 6.99963 7.51291 8.99982 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.003364 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.354233 B = 8320.641203 C = 9379.124860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.362 5.362 3 C 0.178 3.822 4 C -0.824 4.824 5 S 2.750 3.250 6 O -0.987 6.987 7 O -0.998 6.998 8 N -1.105 6.105 9 C 0.127 3.873 10 C 0.042 3.958 11 N -0.527 5.527 12 C 0.202 3.798 13 C -0.513 4.513 14 H 0.071 0.929 15 C 0.005 3.995 16 N -0.934 5.934 17 Si 0.954 3.046 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.290 1.290 21 C 0.064 3.936 22 C -0.011 4.011 23 C 0.242 3.758 24 N -0.505 5.505 25 C 0.129 3.871 26 N -0.322 5.322 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.212 0.788 31 H 0.428 0.572 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.114 0.886 36 H 0.020 0.980 37 H -0.037 1.037 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -17.644 7.194 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.139 5.139 3 C 0.023 3.977 4 C -0.925 4.925 5 S 2.839 3.161 6 O -0.977 6.977 7 O -0.987 6.987 8 N -0.867 5.867 9 C 0.000 4.000 10 C -0.087 4.087 11 N -0.251 5.251 12 C 0.076 3.924 13 C -0.551 4.551 14 H 0.089 0.911 15 C -0.193 4.193 16 N -0.575 5.575 17 Si 0.780 3.220 18 H -0.185 1.185 19 H -0.208 1.208 20 H -0.216 1.216 21 C -0.066 4.066 22 C -0.051 4.051 23 C -0.075 4.075 24 N -0.184 5.184 25 C -0.060 4.060 26 N -0.141 5.141 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.229 0.771 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.132 0.868 36 H 0.038 0.962 37 H -0.020 1.020 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.479 -18.380 6.443 19.634 hybrid contribution 0.274 1.716 -0.311 1.766 sum -2.205 -16.664 6.131 17.892 Atomic orbital electron populations 1.22467 0.71202 1.06866 1.05478 1.49412 1.08726 1.03352 1.52368 1.22968 0.89227 0.95332 0.90200 1.31422 1.16386 1.09011 1.35651 0.99792 0.72293 0.72188 0.71789 1.93526 1.54935 1.72271 1.76940 1.93558 1.84285 1.43259 1.77645 1.55140 1.31812 1.69379 1.30414 1.21153 0.92346 0.95302 0.91199 1.22362 0.93461 0.99780 0.93117 1.61829 1.41799 1.20378 1.01099 1.19491 0.93708 0.83559 0.95639 1.21550 1.16430 0.99071 1.18077 0.91120 1.25753 0.99516 0.97635 0.96420 1.70085 1.43489 1.10750 1.33145 0.85561 0.79407 0.78172 0.78827 1.18490 1.20780 1.21607 1.21839 0.98215 0.96063 0.90435 1.19444 1.06030 0.99123 0.80524 1.29710 0.91251 0.91187 0.95349 1.81207 1.11900 1.10619 1.14663 1.23901 0.96218 0.92245 0.93619 1.77368 1.02246 1.08930 1.25565 0.88657 0.86403 0.88021 0.77126 0.73502 0.89373 0.92537 0.95333 0.86811 0.96239 1.01960 0.93045 0.91590 0.94545 0.84155 0.84937 0.76718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 11.47 127.77 1.47 2.19 16 2 N -0.36 -6.49 4.01 -369.56 -1.48 -7.97 16 3 C 0.18 3.35 11.23 83.54 0.94 4.29 16 4 C -0.82 -17.01 6.14 21.99 0.14 -16.88 16 5 S 2.75 63.76 5.88 -56.49 -0.33 63.43 16 6 O -0.99 -26.32 17.87 -128.00 -2.29 -28.61 16 7 O -1.00 -31.07 17.31 -128.00 -2.22 -33.28 16 8 N -1.10 -20.98 6.00 -187.50 -1.12 -22.11 16 9 C 0.13 2.94 6.25 86.38 0.54 3.48 16 10 C 0.04 1.01 4.95 86.30 0.43 1.44 16 11 N -0.53 -16.51 4.36 -900.80 -3.92 -20.43 16 12 C 0.20 9.07 4.55 85.55 0.39 9.46 16 13 C -0.51 -25.42 8.23 25.60 0.21 -25.21 16 14 H 0.07 3.36 7.31 -2.91 -0.02 3.34 16 15 C 0.00 0.25 5.46 84.65 0.46 0.71 16 16 N -0.93 -53.01 13.29 21.45 0.28 -52.72 16 17 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 C 0.06 1.79 4.75 86.30 0.41 2.20 16 22 C -0.01 -0.20 5.75 28.79 0.17 -0.04 16 23 C 0.24 5.94 15.43 89.44 1.38 7.32 16 24 N -0.51 -15.73 18.54 20.01 0.37 -15.36 16 25 C 0.13 2.57 11.82 85.24 1.01 3.58 16 26 N -0.32 -6.97 12.58 -57.02 -0.72 -7.68 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.80 8.14 -2.38 -0.02 0.79 16 30 H 0.21 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.43 5.82 8.65 -96.74 -0.84 4.99 16 32 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.68 6.56 -2.39 -0.02 1.66 16 34 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 35 H 0.11 1.71 6.56 -2.39 -0.02 1.69 16 36 H 0.02 0.95 6.71 -2.39 -0.02 0.94 16 37 H -0.04 -1.90 8.12 -2.39 -0.02 -1.92 16 38 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.07 2.27 6.57 -2.39 -0.02 2.26 16 40 H 0.04 0.99 8.00 -2.39 -0.02 0.97 16 41 H 0.14 1.52 6.89 -2.39 -0.02 1.51 16 42 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.22 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -78.92 385.24 -1.66 -80.58 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.21 Total: 8.09 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 7.53 Total: -7.45 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.59 Total: -126.28 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -4.50 Total: -61.89 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 63.76 SS G_CDS: -0.33 Total: 63.43 kcal Total: -78.92 -1.66 -80.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072605335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.037 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds