Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48501 * 109.47027 * 270.00217 * 3 2 1 5 5 H 1.48494 * 109.46953 * 30.00205 * 3 2 1 6 6 H 1.48503 * 109.47196 * 150.00425 * 3 2 1 7 7 C 1.38698 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00367 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00329 * 0.02562 * 7 2 1 10 10 C 1.35521 * 117.00046 * 185.06056 * 9 7 2 11 11 C 1.38837 * 120.16235 * 354.39806 * 10 9 7 12 12 C 1.38020 * 120.06801 * 180.27375 * 11 10 9 13 13 C 1.38575 * 120.40394 * 359.74625 * 12 11 10 14 14 C 1.37823 * 120.32520 * 359.97438 * 13 12 11 15 15 C 1.39672 * 119.91548 * 0.02562 * 14 13 12 16 16 C 1.47537 * 120.19442 * 179.97438 * 15 14 13 17 17 O 1.21597 * 120.00050 * 180.02562 * 16 15 14 18 18 N 1.34777 * 120.00087 * 0.02562 * 16 15 14 19 19 C 1.46499 * 120.00068 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47089 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.47024 * 60.00228 * 20 19 18 22 22 O 1.42889 * 109.47129 * 299.99413 * 20 19 18 23 23 C 1.53006 * 109.46810 * 179.97438 * 20 19 18 24 24 C 1.50697 * 109.46687 * 185.00142 * 23 20 19 25 25 C 1.38237 * 119.99762 * 269.72369 * 24 23 20 26 26 C 1.38238 * 119.99780 * 180.32875 * 25 24 23 27 27 C 1.38232 * 120.00085 * 359.94736 * 26 25 24 28 28 C 1.38229 * 120.00330 * 0.02865 * 27 26 25 29 29 C 1.38232 * 120.00465 * 90.00455 * 24 23 20 30 30 H 0.96992 * 119.99602 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.96535 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.79747 * 179.76947 * 12 11 10 33 33 H 1.07997 * 119.83678 * 180.02562 * 13 12 11 34 34 H 1.07994 * 120.04503 * 180.02562 * 14 13 12 35 35 H 0.96995 * 120.00082 * 0.02562 * 18 16 15 36 36 H 1.08998 * 109.47538 * 59.99388 * 19 18 16 37 37 H 1.09010 * 109.46727 * 299.99742 * 19 18 16 38 38 H 0.96702 * 114.00434 * 300.00454 * 22 20 19 39 39 H 1.08998 * 109.46753 * 65.00154 * 23 20 19 40 40 H 1.08998 * 109.47208 * 304.99483 * 23 20 19 41 41 H 1.07992 * 120.00445 * 0.27883 * 25 24 23 42 42 H 1.08002 * 119.99786 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.99788 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.00618 * 179.97438 * 28 27 26 45 45 H 1.08002 * 119.99719 * 359.71400 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.7000 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2013 0.0001 9 8 1.3345 -2.3688 0.0005 10 6 2.0685 -3.5030 0.1076 11 6 3.4554 -3.4403 0.0941 12 6 4.2009 -4.5972 0.1975 13 6 3.5741 -5.8269 0.3207 14 6 2.1984 -5.9076 0.3417 15 6 1.4307 -4.7454 0.2380 16 6 -0.0424 -4.8248 0.2592 17 8 -0.7073 -3.8108 0.1682 18 7 -0.6511 -6.0212 0.3796 19 6 -2.1139 -6.1001 0.4001 20 6 -2.5438 -7.5614 0.5437 21 1 -2.1450 -7.9678 1.4731 22 8 -2.0417 -8.3163 -0.5607 23 6 -4.0715 -7.6436 0.5658 24 6 -4.4942 -9.0658 0.8300 25 6 -4.6989 -9.9335 -0.2264 26 6 -5.0931 -11.2362 0.0156 27 6 -5.2816 -11.6713 1.3141 28 6 -5.0765 -10.8038 2.3705 29 6 -4.6828 -9.5010 2.1284 30 1 -0.4849 0.8400 0.0004 31 1 3.9513 -2.4857 -0.0016 32 1 5.2796 -4.5437 0.1828 33 1 4.1664 -6.7263 0.4015 34 1 1.7145 -6.8683 0.4383 35 1 -0.1208 -6.8300 0.4526 36 1 -2.5128 -5.6939 -0.5294 37 1 -2.4970 -5.5237 1.2424 38 1 -2.3561 -8.0097 -1.4222 39 1 -4.4667 -7.3200 -0.3971 40 1 -4.4588 -6.9973 1.3534 41 1 -4.5516 -9.5936 -1.2408 42 1 -5.2535 -11.9140 -0.8097 43 1 -5.5893 -12.6892 1.5032 44 1 -5.2241 -11.1436 3.3850 45 1 -4.5228 -8.8230 2.9538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104910936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -63.368618 kcal Electronic energy + Delta-G solvation = -28143.415236 eV Core-core repulsion = 24091.462271 eV Total energy + Delta-G solvation = -4051.952965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84350 -39.47268 -38.32593 -37.28486 -36.30851 -33.77148 -33.08377 -32.32969 -31.09738 -30.79590 -29.27776 -28.89288 -26.12964 -25.30185 -23.10217 -22.78546 -22.14400 -21.32169 -21.23192 -19.77690 -18.06492 -17.71319 -17.12674 -16.51699 -16.22369 -16.08759 -15.30020 -15.13813 -15.05122 -14.65416 -14.37904 -14.22414 -14.14989 -13.84955 -13.71016 -13.61819 -13.40058 -13.16667 -12.72144 -12.59958 -12.44409 -12.23387 -11.94821 -11.70948 -11.41532 -11.30284 -11.19096 -11.13245 -11.08258 -10.89205 -10.77616 -10.46089 -10.30504 -9.56465 -9.12278 -8.94586 -8.87332 -8.77755 -8.55546 -8.24843 -7.29555 -6.43914 -4.03752 1.13523 1.20057 1.73544 2.33751 3.11909 3.13035 3.17713 3.47930 3.70633 3.76467 3.94034 4.24875 4.42883 4.60680 4.65778 4.76599 4.83863 4.90316 4.94397 5.01643 5.08252 5.19150 5.25623 5.29841 5.46920 5.47835 5.54831 5.57084 5.72177 5.81274 5.82925 5.87785 5.98183 6.12049 6.14060 6.24691 6.29922 6.41434 6.58401 6.70751 6.79331 6.92647 6.95022 7.08228 7.25355 7.30554 7.46183 7.71179 7.93097 8.15461 8.95923 9.11300 9.68722 10.70092 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.002205 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.719865 B =12693.550905 C =13935.340006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.125 6.125 10 C 0.189 3.811 11 C -0.239 4.239 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.227 4.227 16 C 0.554 3.446 17 O -0.504 6.504 18 N -0.739 5.739 19 C 0.093 3.907 20 C 0.104 3.896 21 H 0.104 0.896 22 O -0.554 6.554 23 C -0.113 4.113 24 C -0.072 4.072 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.271 0.729 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.396 0.604 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.375 0.625 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -19.504 1.581 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.479 4.479 8 H 0.111 0.889 9 O -0.023 6.023 10 C 0.130 3.870 11 C -0.258 4.258 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.343 3.657 17 O -0.378 6.378 18 N -0.395 5.395 19 C -0.032 4.032 20 C 0.044 3.956 21 H 0.122 0.878 22 O -0.359 6.359 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.122 4.122 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.139 4.139 29 C -0.137 4.137 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.222 0.778 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.563 -18.788 1.967 20.349 hybrid contribution 0.519 0.646 -0.344 0.897 sum -7.044 -18.142 1.623 19.529 Atomic orbital electron populations 1.70129 1.05969 1.27674 1.42769 1.25384 0.95806 0.98949 0.96214 0.85727 0.78998 0.79993 0.78786 1.19760 1.20149 1.19064 1.21498 0.91886 0.81145 1.53394 0.88889 1.84176 1.33507 1.10956 1.73635 1.19285 0.89865 0.87421 0.90475 1.21156 0.93391 0.99318 1.11907 1.20900 0.98636 0.92316 0.95096 1.20471 0.94090 0.97117 1.13289 1.20787 0.93855 0.95581 0.95390 1.18844 0.91933 0.92141 1.20249 1.18253 0.87860 0.82786 0.76798 1.90948 1.65821 1.33892 1.47134 1.45753 1.05941 1.09374 1.78437 1.21887 0.82392 0.95956 1.02934 1.22141 0.91879 0.90385 0.91147 0.87783 1.86593 1.73795 1.58679 1.16812 1.21290 0.96209 0.93620 1.04027 1.19711 0.98694 0.95520 0.93331 1.21012 0.98928 0.93539 0.98724 1.21140 0.99855 0.96031 0.96846 1.21130 1.00856 0.99580 0.92950 1.21121 0.99881 0.93842 0.99007 1.21082 1.00078 0.96212 0.96314 0.91900 0.85086 0.87190 0.87262 0.86948 0.76836 0.91537 0.90943 0.77765 0.90095 0.89439 0.86185 0.86255 0.86373 0.86227 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.40 -11.47 9.49 30.90 0.29 -11.17 16 8 H 0.09 2.40 5.21 -52.48 -0.27 2.13 16 9 O -0.12 -3.69 7.84 -21.08 -0.17 -3.86 16 10 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 13 C -0.23 -3.86 10.02 -39.61 -0.40 -4.25 16 14 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 16 C 0.55 12.19 7.76 -12.47 -0.10 12.10 16 17 O -0.50 -13.77 15.17 -16.57 -0.25 -14.02 16 18 N -0.74 -11.85 5.40 -61.34 -0.33 -12.18 16 19 C 0.09 1.24 5.34 -4.04 -0.02 1.22 16 20 C 0.10 1.02 3.04 -26.73 -0.08 0.94 16 21 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 22 O -0.55 -5.56 12.59 -35.23 -0.44 -6.00 16 23 C -0.11 -0.95 5.03 -27.88 -0.14 -1.09 16 24 C -0.07 -0.66 4.96 -104.63 -0.52 -1.18 16 25 C -0.10 -0.92 9.42 -39.58 -0.37 -1.30 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.13 -1.04 10.05 -39.59 -0.40 -1.44 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 32 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.57 6.40 -52.49 -0.34 1.23 16 35 H 0.40 5.44 6.38 -40.82 -0.26 5.18 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.37 2.80 9.05 45.56 0.41 3.21 16 39 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -36.08 385.19 -9.62 -45.70 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.96 Total: 11.74 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -5.01 Total: -18.30 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.43 Total: -36.63 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.86 Total: -23.88 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.08 -9.62 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104910936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.664 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds