Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38885 * 125.76293 * 2 1 4 4 C 1.38966 * 133.11278 * 359.72655 * 3 2 1 5 5 C 1.37643 * 120.04630 * 180.02562 * 4 3 2 6 6 C 1.39868 * 120.14667 * 359.93802 * 5 4 3 7 7 C 1.47604 * 120.01769 * 180.02562 * 6 5 4 8 8 O 1.21601 * 119.99631 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00231 * 359.97438 * 7 6 5 10 10 C 1.40090 * 120.00155 * 179.97438 * 9 7 6 11 11 C 1.40414 * 125.97363 * 359.72046 * 10 9 7 12 12 C 1.35236 * 107.86712 * 179.86129 * 11 10 9 13 13 N 1.34972 * 107.86338 * 0.39458 * 12 11 10 14 14 C 1.46500 * 125.97544 * 179.72810 * 13 12 11 15 15 C 1.50704 * 109.46970 * 125.00182 * 14 13 12 16 16 H 1.07993 * 119.99980 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99755 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99960 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99986 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47116 * 90.00600 * 19 17 15 21 21 H 1.48501 * 109.47002 * 210.00290 * 19 17 15 22 22 H 1.48498 * 109.47489 * 330.00250 * 19 17 15 23 23 N 1.31227 * 125.97166 * 180.02562 * 10 9 7 24 24 C 1.39603 * 119.96188 * 0.03150 * 6 5 4 25 25 C 1.38256 * 119.72756 * 359.97438 * 24 6 5 26 26 N 1.39376 * 133.22284 * 179.97438 * 25 24 6 27 27 H 0.96997 * 125.87282 * 0.02562 * 26 25 24 28 28 C 1.34614 * 125.75128 * 179.68032 * 2 1 3 29 29 O 1.21673 * 125.14442 * 0.27129 * 28 2 1 30 30 H 1.08996 * 109.46746 * 90.00513 * 1 2 3 31 31 H 1.09003 * 109.47472 * 210.00585 * 1 2 3 32 32 H 1.09002 * 109.46582 * 330.00612 * 1 2 3 33 33 H 1.08006 * 119.97763 * 0.02562 * 4 3 2 34 34 H 1.08008 * 119.92413 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99931 * 0.02562 * 9 7 6 36 36 H 1.08000 * 126.06764 * 0.02562 * 11 10 9 37 37 H 1.08003 * 126.07254 * 180.14420 * 12 11 10 38 38 H 1.08997 * 109.47210 * 244.99956 * 14 13 12 39 39 H 1.08997 * 109.47215 * 4.99868 * 14 13 12 40 40 H 0.96998 * 120.00348 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.13756 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2767 1.1270 0.0000 4 6 2.0086 2.4905 -0.0048 5 6 3.0447 3.3966 -0.0039 6 6 4.3697 2.9486 0.0033 7 6 5.4786 3.9228 0.0048 8 8 6.6303 3.5328 0.0115 9 7 5.2146 5.2444 -0.0011 10 6 6.2670 6.1690 0.0009 11 6 7.6366 5.8597 0.0144 12 6 8.3249 7.0237 0.0086 13 7 7.4299 8.0339 0.0009 14 6 7.7466 9.4643 -0.0015 15 6 7.0656 10.1275 -1.1710 16 1 6.4582 9.5421 -1.8451 17 6 7.2191 11.4816 -1.3807 18 7 6.6253 12.0603 -2.4015 19 14 8.2704 12.4941 -0.2150 20 1 9.6731 12.5117 -0.7022 21 1 7.7487 13.8832 -0.1579 22 1 8.2252 11.8922 1.1418 23 7 6.1452 7.4756 -0.0038 24 6 4.6427 1.5795 0.0088 25 6 3.5994 0.6724 0.0077 26 7 3.5455 -0.7203 0.0116 27 1 4.3089 -1.3187 0.0164 28 6 2.2515 -1.0925 0.0061 29 8 1.8533 -2.2422 0.0078 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3632 0.8901 0.5138 33 1 0.9865 2.8395 -0.0094 34 1 2.8341 4.4560 -0.0081 35 1 4.2957 5.5554 -0.0061 36 1 8.0644 4.8681 0.0247 37 1 9.4000 7.1268 0.0137 38 1 7.3961 9.9156 0.9267 39 1 8.8251 9.5975 -0.0857 40 1 6.7329 13.0130 -2.5489 41 1 5.6648 1.2304 0.0147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117854953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = 89.714841 kcal Electronic energy + Delta-G solvation = -27436.691421 eV Core-core repulsion = 23320.129060 eV Total energy + Delta-G solvation = -4116.562360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.97397 -40.87061 -39.73110 -38.32189 -36.24268 -35.55441 -34.92703 -33.33247 -31.48609 -31.01143 -29.79668 -29.38295 -28.18186 -27.11518 -24.43803 -23.20469 -22.55256 -21.84960 -21.63159 -20.39952 -19.85563 -18.65315 -18.26183 -17.28554 -17.05086 -16.98498 -16.38213 -16.14824 -15.92950 -15.37870 -15.28263 -14.69542 -14.52646 -14.42036 -14.22893 -14.05960 -13.70946 -13.54048 -13.30392 -13.06805 -12.94426 -12.56822 -12.36578 -12.19079 -11.77694 -11.48349 -11.22039 -11.09188 -10.94269 -10.80420 -10.68860 -10.15591 -10.04025 -9.78162 -9.56067 -9.00166 -8.79059 -8.39994 -8.23718 -7.57719 -6.25851 -4.28355 0.35105 0.74474 1.76587 2.30641 2.43143 2.52714 2.76731 2.85548 3.13777 3.20570 3.22566 3.28536 3.69747 3.74026 3.92937 4.20726 4.23323 4.42443 4.46908 4.70498 4.76903 4.79604 4.95039 5.01742 5.08046 5.13916 5.39262 5.48360 5.64136 5.68482 5.77133 5.91973 6.04374 6.11720 6.34165 6.34992 6.39351 6.51883 6.62655 6.70303 7.21170 7.27307 7.49745 7.70698 7.76770 8.10925 8.30383 8.50246 8.83668 9.28978 10.86761 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.001879 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.152311 B =14900.544225 C =15629.670916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.539 5.539 3 C 0.115 3.885 4 C -0.110 4.110 5 C -0.070 4.070 6 C -0.119 4.119 7 C 0.569 3.431 8 O -0.514 6.514 9 N -0.623 5.623 10 C 0.260 3.740 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.318 5.318 14 C 0.232 3.768 15 C -0.535 4.535 16 H 0.086 0.914 17 C 0.076 3.924 18 N -0.887 5.887 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.295 5.295 24 C -0.037 4.037 25 C 0.078 3.922 26 N -0.640 5.640 27 H 0.438 0.562 28 C 0.682 3.318 29 O -0.554 6.554 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.411 0.589 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -21.725 6.685 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.261 5.261 3 C 0.013 3.987 4 C -0.131 4.131 5 C -0.091 4.091 6 C -0.124 4.124 7 C 0.356 3.644 8 O -0.388 6.388 9 N -0.271 5.271 10 C 0.006 3.994 11 C -0.314 4.314 12 C -0.098 4.098 13 N -0.099 5.099 14 C 0.113 3.887 15 C -0.573 4.573 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.524 5.524 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.126 5.126 24 C -0.059 4.059 25 C -0.024 4.024 26 N -0.285 5.285 27 H 0.280 0.720 28 C 0.383 3.617 29 O -0.429 6.429 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.248 0.752 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.728 -21.550 6.583 24.544 hybrid contribution 0.901 0.033 0.392 0.983 sum -8.828 -21.518 6.976 24.282 Atomic orbital electron populations 1.21823 0.74368 1.04644 1.03554 1.44972 1.07611 1.04541 1.68958 1.18265 0.88161 0.89427 1.02886 1.19964 1.00537 0.88103 1.04529 1.21089 0.90711 1.00037 0.97262 1.19373 0.92977 0.92613 1.07486 1.17894 0.88625 0.81167 0.76711 1.90734 1.21104 1.78810 1.48197 1.42269 1.08495 1.04129 1.72207 1.19040 0.88140 0.88744 1.03454 1.21549 0.90683 0.99621 1.19502 1.22573 0.97041 0.87710 1.02458 1.48631 1.01487 1.07391 1.52421 1.20064 0.96980 0.72045 0.99656 1.21098 1.31911 0.94063 1.10224 0.89614 1.24834 0.95411 0.97290 0.95239 1.69867 1.42687 1.11459 1.28407 0.86909 0.81004 0.80451 0.81745 1.19716 1.20535 1.18861 1.77395 1.02633 1.05039 1.27488 1.20065 0.98334 0.89976 0.97511 1.17774 0.93829 0.83576 1.07268 1.42947 1.08502 1.05608 1.71482 0.72002 1.15929 0.80840 0.84524 0.80362 1.91083 1.76432 1.16897 1.58536 0.90892 0.89250 0.89511 0.84243 0.84049 0.75189 0.82010 0.81321 0.93972 0.93289 0.92162 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 10.99 59.85 0.66 1.11 16 2 N -0.54 -4.32 3.17 -126.29 -0.40 -4.72 16 3 C 0.12 0.90 6.83 -83.79 -0.57 0.32 16 4 C -0.11 -0.67 9.99 -39.53 -0.39 -1.07 16 5 C -0.07 -0.49 9.52 -39.19 -0.37 -0.87 16 6 C -0.12 -1.13 5.87 -104.96 -0.62 -1.74 16 7 C 0.57 7.44 7.73 -12.44 -0.10 7.35 16 8 O -0.51 -8.12 13.46 5.28 0.07 -8.05 16 9 N -0.62 -8.78 5.40 -12.06 -0.07 -8.85 16 10 C 0.26 4.87 8.10 -154.45 -1.25 3.62 16 11 C -0.28 -5.19 9.60 -39.83 -0.38 -5.58 16 12 C 0.05 0.95 11.44 -17.24 -0.20 0.75 16 13 N -0.32 -6.92 3.67 -62.56 -0.23 -7.15 16 14 C 0.23 5.32 5.33 -5.19 -0.03 5.29 16 15 C -0.53 -14.73 9.79 -34.44 -0.34 -15.07 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 19 Si 0.87 19.70 27.47 -169.99 -4.67 15.03 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 23 N -0.29 -6.44 12.42 31.43 0.39 -6.05 16 24 C -0.04 -0.32 9.61 -39.07 -0.38 -0.69 16 25 C 0.08 0.64 7.24 -83.81 -0.61 0.03 16 26 N -0.64 -5.12 6.16 -14.32 -0.09 -5.21 16 27 H 0.44 2.46 8.96 -40.82 -0.37 2.09 16 28 C 0.68 6.96 8.82 -87.19 -0.77 6.19 16 29 O -0.55 -7.38 17.76 5.21 0.09 -7.28 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.44 8.02 -51.93 -0.42 0.02 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.14 0.72 6.38 -52.48 -0.33 0.39 16 35 H 0.41 4.55 6.84 -40.82 -0.28 4.27 16 36 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 37 H 0.17 2.43 8.06 -52.48 -0.42 2.01 16 38 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 39 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.15 1.22 7.64 -52.48 -0.40 0.82 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -36.70 357.76 -8.33 -45.03 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.15 Total: 5.54 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -5.44 Total: 1.65 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.38 Total: -57.31 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.34 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.70 -8.33 -45.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.743 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds