Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47455 * 2 1 4 4 C 1.36940 * 120.00031 * 266.64668 * 3 2 1 5 5 H 1.07995 * 119.99612 * 338.16164 * 4 3 2 6 6 C 1.38813 * 120.00072 * 158.16510 * 4 3 2 7 7 N 1.31618 * 119.99918 * 5.18403 * 6 4 3 8 8 Si 1.86799 * 119.99711 * 185.19026 * 6 4 3 9 9 H 1.48501 * 109.47471 * 89.99999 * 8 6 4 10 10 H 1.48500 * 109.46826 * 209.99631 * 8 6 4 11 11 H 1.48493 * 109.47162 * 329.99448 * 8 6 4 12 12 C 1.46503 * 120.00118 * 86.63948 * 3 2 1 13 13 C 1.50697 * 109.47472 * 270.00513 * 12 3 2 14 14 O 1.21281 * 119.99928 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00135 * 179.97438 * 13 12 3 16 16 C 1.46499 * 120.00092 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47291 * 180.02562 * 16 15 13 18 18 O 1.21289 * 119.99899 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00204 * 180.02562 * 17 16 15 20 20 C 1.40026 * 120.00201 * 185.13226 * 19 17 16 21 21 C 1.38862 * 120.03397 * 213.45811 * 20 19 17 22 22 C 1.38130 * 119.99719 * 180.02562 * 21 20 19 23 23 C 1.38429 * 120.07084 * 359.97438 * 22 21 20 24 24 F 1.35098 * 119.96752 * 180.27267 * 23 22 21 25 25 C 1.38668 * 120.06800 * 0.02562 * 23 22 21 26 26 F 1.35101 * 120.00129 * 180.02562 * 25 23 22 27 27 C 1.38318 * 120.00313 * 359.97438 * 25 23 22 28 28 H 1.09000 * 109.47564 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47201 * 300.00269 * 1 2 3 30 30 H 1.08999 * 109.47272 * 59.99676 * 1 2 3 31 31 H 1.09006 * 109.47201 * 239.99731 * 2 1 3 32 32 H 1.08999 * 109.47272 * 120.00324 * 2 1 3 33 33 H 0.97004 * 119.99966 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46834 * 149.99987 * 12 3 2 35 35 H 1.09003 * 109.46724 * 30.00417 * 12 3 2 36 36 H 0.96998 * 119.99793 * 0.02562 * 15 13 12 37 37 H 1.09003 * 109.46874 * 59.99897 * 16 15 13 38 38 H 1.08995 * 109.47559 * 300.00148 * 16 15 13 39 39 H 0.96998 * 120.00222 * 5.13148 * 19 17 16 40 40 H 1.07998 * 120.00584 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.96833 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.04157 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3120 2.0035 -1.1839 5 1 2.5285 1.4158 -2.0637 6 6 2.3315 3.3898 -1.2531 7 7 2.1687 4.1056 -0.1606 8 14 2.5884 4.2393 -2.8968 9 1 1.2726 4.4733 -3.5442 10 1 3.2717 5.5399 -2.6803 11 1 3.4252 3.3803 -3.7725 12 6 2.1924 2.0966 1.2666 13 6 0.9149 2.8147 1.6177 14 8 -0.0462 2.7369 0.8821 15 7 0.8405 3.5432 2.7491 16 6 -0.4012 4.2418 3.0901 17 6 -0.2221 4.9776 4.3930 18 8 0.8386 4.9242 4.9788 19 7 -1.2405 5.6950 4.9073 20 6 -1.0426 6.4649 6.0600 21 6 -2.0762 6.6278 6.9730 22 6 -1.8803 7.3879 8.1096 23 6 -0.6541 7.9876 8.3402 24 9 -0.4630 8.7260 9.4552 25 6 0.3800 7.8268 7.4304 26 9 1.5763 8.4122 7.6570 27 6 0.1870 7.0662 6.2913 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1820 5.0743 -0.2091 34 1 3.0008 2.8209 1.1665 35 1 2.4378 1.3850 2.0550 36 1 1.6094 3.6057 3.3371 37 1 -1.2099 3.5177 3.1895 38 1 -0.6459 4.9537 2.3019 39 1 -2.1107 5.6780 4.4790 40 1 -3.0334 6.1609 6.7941 41 1 -2.6846 7.5146 8.8192 42 1 0.9918 6.9410 5.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121003388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = -116.679621 kcal Electronic energy + Delta-G solvation = -29190.569073 eV Core-core repulsion = 24614.367590 eV Total energy + Delta-G solvation = -4576.201482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.54810 -49.62449 -41.80949 -40.12244 -39.31701 -37.19671 -35.87947 -34.90774 -33.71481 -31.97021 -31.28559 -30.66231 -29.23423 -27.49400 -25.33582 -24.65651 -23.70028 -22.29665 -21.78953 -21.06087 -19.64329 -19.05202 -18.69518 -18.54542 -17.87777 -17.40153 -17.27089 -17.04173 -16.80845 -16.59326 -16.28588 -16.05562 -15.71886 -15.58936 -15.31314 -15.12342 -14.93330 -14.69872 -14.29728 -14.10211 -13.99908 -13.76840 -13.56091 -13.38262 -13.22001 -12.95738 -12.85874 -12.56375 -12.55234 -12.23082 -11.95954 -11.73301 -11.50598 -11.42446 -11.16960 -10.73898 -10.17594 -10.11193 -9.68555 -9.28290 -8.71616 -7.82010 -5.21181 -0.27153 -0.07530 1.28210 1.46176 1.49651 1.55302 1.63517 2.33253 2.45498 2.57909 2.74824 2.86251 3.20363 3.40711 3.45451 3.61973 3.75783 3.88252 3.97774 4.29393 4.37089 4.43848 4.49381 4.68983 4.70846 4.79175 4.80306 4.90617 4.94301 4.97454 5.06064 5.13381 5.19277 5.34602 5.47351 5.65149 5.69557 5.72445 5.85389 6.20804 6.39006 6.86872 7.00243 7.23303 7.86130 8.09109 8.32833 9.21727 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.002346 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.075283 B =11931.784996 C =12682.935664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 N -0.595 5.595 4 C -0.249 4.249 5 H 0.072 0.928 6 C -0.044 4.044 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.300 1.300 10 H -0.295 1.295 11 H -0.271 1.271 12 C 0.165 3.835 13 C 0.539 3.461 14 O -0.574 6.574 15 N -0.735 5.735 16 C 0.115 3.885 17 C 0.521 3.479 18 O -0.543 6.543 19 N -0.652 5.652 20 C 0.166 3.834 21 C -0.103 4.103 22 C -0.088 4.088 23 C 0.036 3.964 24 F -0.138 7.138 25 C 0.065 3.935 26 F -0.143 7.143 27 C -0.151 4.151 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.020 0.980 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.243 0.757 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.402 0.598 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.438 0.562 40 H 0.190 0.810 41 H 0.188 0.812 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 4.245 17.442 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 N -0.316 5.316 4 C -0.379 4.379 5 H 0.089 0.911 6 C -0.238 4.238 7 N -0.568 5.568 8 Si 0.795 3.205 9 H -0.227 1.227 10 H -0.222 1.222 11 H -0.196 1.196 12 C 0.035 3.965 13 C 0.327 3.673 14 O -0.452 6.452 15 N -0.393 5.393 16 C -0.013 4.013 17 C 0.310 3.690 18 O -0.419 6.419 19 N -0.300 5.300 20 C 0.071 3.929 21 C -0.123 4.123 22 C -0.107 4.107 23 C 0.015 3.985 24 F -0.117 7.117 25 C 0.044 3.956 26 F -0.122 7.122 27 C -0.172 4.172 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.279 0.721 40 H 0.207 0.793 41 H 0.205 0.795 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.610 4.271 17.244 21.222 hybrid contribution 0.633 1.367 -0.828 1.719 sum -10.977 5.639 16.415 20.536 Atomic orbital electron populations 1.22140 0.98731 0.99239 1.00351 1.21061 0.92688 0.85020 0.99946 1.44003 1.74527 1.10921 1.02132 1.19495 1.39046 0.89732 0.89593 0.91063 1.25527 1.01443 0.97171 0.99654 1.69799 1.56379 1.04272 1.26394 0.85295 0.76703 0.77767 0.80729 1.22746 1.22203 1.19573 1.20623 0.94525 0.94764 0.86624 1.21878 0.90327 0.77561 0.77511 1.90468 1.40211 1.64719 1.49802 1.45834 1.14850 1.52874 1.25704 1.20851 0.90633 0.97261 0.92568 1.20905 0.83507 0.78218 0.86388 1.90726 1.27804 1.62304 1.61102 1.43273 1.15575 1.44796 1.26330 1.17607 0.93972 0.92633 0.88733 1.21268 1.00395 0.99563 0.91101 1.21283 0.94906 0.95476 0.98991 1.17929 0.95544 0.99780 0.85205 1.91502 1.95811 1.74915 1.49494 1.17686 0.81495 0.99504 0.96878 1.91493 1.43700 1.82366 1.94607 1.20969 1.00110 0.98424 0.97736 0.92070 0.94400 0.96103 0.92991 0.92235 0.94692 0.88984 0.92586 0.76176 0.87470 0.89556 0.72090 0.79323 0.79479 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.34 71.98 0.67 -5.12 16 2 C 0.14 5.62 6.43 86.38 0.56 6.17 16 3 N -0.60 -29.20 2.10 -706.35 -1.48 -30.68 16 4 C -0.25 -13.48 9.70 84.03 0.81 -12.66 16 5 H 0.07 3.79 7.80 -2.91 -0.02 3.76 16 6 C -0.04 -2.40 5.39 84.86 0.46 -1.94 16 7 N -0.92 -51.05 8.15 21.65 0.18 -50.88 16 8 Si 0.96 45.70 29.56 68.60 2.03 47.73 16 9 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.16 7.57 5.47 85.63 0.47 8.04 16 13 C 0.54 24.32 5.52 87.66 0.48 24.81 16 14 O -0.57 -29.72 13.74 -3.03 -0.04 -29.77 16 15 N -0.74 -26.83 5.53 -466.80 -2.58 -29.41 16 16 C 0.11 3.22 6.16 85.63 0.53 3.74 16 17 C 0.52 12.68 7.64 87.66 0.67 13.35 16 18 O -0.54 -17.06 13.36 -3.06 -0.04 -17.10 16 19 N -0.65 -10.14 5.34 -303.48 -1.62 -11.76 16 20 C 0.17 2.80 6.28 38.12 0.24 3.04 16 21 C -0.10 -0.96 9.96 22.39 0.22 -0.74 16 22 C -0.09 -0.93 10.02 22.29 0.22 -0.70 16 23 C 0.04 0.68 7.30 22.42 0.16 0.85 16 24 F -0.14 -2.92 17.18 44.97 0.77 -2.14 16 25 C 0.06 1.55 7.30 22.39 0.16 1.71 16 26 F -0.14 -4.01 17.18 44.97 0.77 -3.23 16 27 C -0.15 -3.57 8.63 22.43 0.19 -3.37 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.60 6.40 -2.38 -0.02 1.59 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 2.03 7.99 -2.38 -0.02 2.01 16 32 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 33 H 0.24 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.09 4.68 6.30 -2.39 -0.02 4.67 16 35 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 36 H 0.40 14.22 7.44 -92.71 -0.69 13.53 16 37 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.44 3.31 8.82 -92.71 -0.82 2.49 16 40 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 41 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 42 H 0.13 3.82 6.42 -2.91 -0.02 3.80 16 Total: -1.00 -74.50 362.62 3.43 -71.07 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.41 Total: 19.00 kcal Atomic # 6 Polarization: 31.32 SS G_CDS: 5.86 Total: 37.17 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.51 Total: -122.73 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.08 Total: -46.87 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.55 Total: -5.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.50 3.43 -71.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121003388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.607 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds