Wall clock time and date at job start Sat Apr 11 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00598 * 3 2 1 5 5 H 1.48504 * 109.47165 * 30.00156 * 3 2 1 6 6 H 1.48500 * 109.47207 * 149.99956 * 3 2 1 7 7 C 1.38817 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99512 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99970 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47523 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.46175 * 65.02532 * 11 10 9 13 13 C 1.53040 * 109.45798 * 305.06715 * 11 10 9 14 14 C 1.53189 * 109.31441 * 178.61480 * 13 11 10 15 15 N 1.46931 * 108.77660 * 54.63026 * 14 13 11 16 16 C 1.34774 * 120.62796 * 126.41269 * 15 14 13 17 17 O 1.21553 * 120.00216 * 352.11623 * 16 15 14 18 18 C 1.47882 * 119.99907 * 172.11538 * 16 15 14 19 19 N 1.32841 * 119.71859 * 352.13855 * 18 16 15 20 20 C 1.31371 * 121.68592 * 179.75235 * 19 18 16 21 21 C 1.38998 * 120.93333 * 0.52991 * 20 19 18 22 22 F 1.35102 * 120.33124 * 179.72152 * 21 20 19 23 23 C 1.38722 * 119.34293 * 359.74031 * 21 20 19 24 24 C 1.38838 * 118.44579 * 0.02562 * 23 21 20 25 25 F 1.35100 * 120.48167 * 179.97438 * 24 23 21 26 26 C 1.46921 * 118.73767 * 306.39931 * 15 14 13 27 27 C 1.53038 * 109.46182 * 184.99925 * 11 10 9 28 28 H 0.97003 * 120.00107 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00615 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47113 * 59.99153 * 10 9 7 31 31 H 1.09009 * 109.46675 * 300.00090 * 10 9 7 32 32 H 0.96695 * 113.99478 * 300.00203 * 12 11 10 33 33 H 1.08999 * 109.50037 * 298.56400 * 13 11 10 34 34 H 1.09000 * 109.49498 * 58.66229 * 13 11 10 35 35 H 1.09001 * 109.58569 * 294.84738 * 14 13 11 36 36 H 1.08997 * 109.59128 * 174.42388 * 14 13 11 37 37 H 1.08005 * 119.53421 * 180.27797 * 20 19 18 38 38 H 1.07996 * 120.77649 * 180.02562 * 23 21 20 39 39 H 1.09002 * 109.58508 * 293.81396 * 26 15 14 40 40 H 1.09007 * 109.58190 * 173.39500 * 26 15 14 41 41 H 1.09008 * 109.49481 * 301.33454 * 27 11 10 42 42 H 1.09005 * 109.49693 * 61.43152 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 8 5.9815 -1.5444 1.2185 13 6 5.9652 -1.2836 -1.1841 14 6 7.4661 -0.9777 -1.1623 15 7 8.2069 -2.2463 -1.1365 16 6 9.1631 -2.5018 -2.0513 17 8 9.3224 -1.7474 -2.9909 18 6 10.0185 -3.7001 -1.9119 19 7 9.9483 -4.4344 -0.8071 20 6 10.6866 -5.5088 -0.6446 21 6 11.5837 -5.9144 -1.6258 22 9 12.3412 -7.0182 -1.4436 23 6 11.6940 -5.1743 -2.7939 24 6 10.8976 -4.0464 -2.9399 25 9 10.9719 -3.2953 -4.0604 26 6 7.8857 -3.2309 -0.0943 27 6 6.3802 -3.5115 -0.1281 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0014 30 1 3.8484 -3.0426 -0.8907 31 1 3.8491 -3.0422 0.8892 32 1 5.5343 -0.6997 1.3649 33 1 5.7100 -1.7864 -2.1169 34 1 5.4031 -0.3530 -1.1063 35 1 7.7075 -0.3955 -0.2730 36 1 7.7373 -0.4143 -2.0550 37 1 10.5982 -6.0828 0.2660 38 1 12.3832 -5.4685 -3.5716 39 1 8.1614 -2.8324 0.8822 40 1 8.4339 -4.1541 -0.2824 41 1 6.1134 -4.1665 0.7014 42 1 6.1210 -3.9934 -1.0708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755151222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:16 Heat of formation + Delta-G solvation = -91.595555 kcal Electronic energy + Delta-G solvation = -30107.816307 eV Core-core repulsion = 25532.702551 eV Total energy + Delta-G solvation = -4575.113756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.79985 -49.52772 -41.26726 -39.81512 -38.49030 -35.75253 -34.18323 -33.34211 -32.08731 -31.71644 -31.07389 -30.51993 -27.18979 -25.48351 -24.63086 -23.73064 -23.18166 -21.77652 -20.84681 -19.69817 -18.91125 -18.74459 -18.02350 -17.63711 -16.97130 -16.53148 -16.41920 -16.06776 -15.89131 -15.43858 -15.34403 -15.04106 -14.91157 -14.53687 -14.35589 -14.17778 -13.93415 -13.83689 -13.45865 -13.19737 -13.08530 -12.97885 -12.58704 -12.30713 -11.99192 -11.63915 -11.48811 -11.25545 -11.10744 -10.93835 -10.72687 -10.58464 -10.38022 -10.29964 -9.67867 -9.63318 -9.54034 -9.39064 -8.97771 -8.64774 -7.32141 -5.82371 -3.19306 -0.30903 0.11655 2.11958 2.56816 2.99855 3.02849 3.28556 3.30922 3.33299 3.40602 3.42946 3.84295 3.90418 4.25355 4.43176 4.52430 4.67006 4.81661 4.87450 4.91464 5.01597 5.08469 5.12593 5.38943 5.44583 5.51144 5.53337 5.64639 5.70148 5.89382 5.94228 5.97146 6.12638 6.19637 6.29148 6.47260 6.58828 6.60668 6.72256 7.22929 7.85005 7.87404 7.95284 8.35360 9.12552 9.84644 10.02569 11.35911 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.002608 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.314832 B =10734.357538 C =11373.939976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.133 3.867 11 C 0.124 3.876 12 O -0.558 6.558 13 C -0.157 4.157 14 C 0.114 3.886 15 N -0.580 5.580 16 C 0.565 3.435 17 O -0.525 6.525 18 C 0.041 3.959 19 N -0.389 5.389 20 C 0.060 3.940 21 C 0.105 3.895 22 F -0.115 7.115 23 C -0.156 4.156 24 C 0.145 3.855 25 F -0.094 7.094 26 C 0.078 3.922 27 C -0.118 4.118 28 H 0.260 0.740 29 H 0.357 0.643 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.378 0.622 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.187 0.813 38 H 0.169 0.831 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.123 -12.800 -2.232 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.006 3.994 11 C 0.083 3.917 12 O -0.365 6.365 13 C -0.196 4.196 14 C -0.007 4.007 15 N -0.311 5.311 16 C 0.351 3.649 17 O -0.401 6.401 18 C -0.097 4.097 19 N -0.100 5.100 20 C -0.101 4.101 21 C 0.083 3.917 22 F -0.093 7.093 23 C -0.183 4.183 24 C 0.122 3.878 25 F -0.072 7.072 26 C -0.044 4.044 27 C -0.156 4.156 28 H 0.070 0.930 29 H 0.191 0.809 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.204 0.796 38 H 0.187 0.813 39 H 0.095 0.905 40 H 0.157 0.843 41 H 0.103 0.897 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.768 -12.708 -2.074 29.704 hybrid contribution 0.685 1.355 -0.827 1.729 sum 27.454 -11.353 -2.900 29.850 Atomic orbital electron populations 1.69694 1.05106 1.25893 1.57275 1.24687 0.95255 0.97197 1.01920 0.86571 0.79087 0.85074 0.77801 1.20980 1.21589 1.20498 1.19029 0.80435 0.94789 1.43299 0.89172 1.42698 1.04200 1.01845 1.91321 1.21310 0.88783 0.89803 0.99527 1.21414 0.94307 0.92307 0.83692 1.86400 1.70094 1.39666 1.40313 1.22546 0.95038 1.01879 1.00107 1.21690 0.91079 0.84656 1.03321 1.47938 1.34929 1.18859 1.29398 1.17520 0.80779 0.83885 0.82734 1.90867 1.70174 1.48302 1.30782 1.21618 0.98873 0.98191 0.91063 1.67919 1.18208 1.04224 1.19601 1.23350 0.92286 0.94940 0.99515 1.18742 0.92737 0.85253 0.94975 1.91604 1.73283 1.49273 1.95126 1.21721 1.02126 0.94923 0.99500 1.18258 0.95334 0.89995 0.84220 1.91683 1.94312 1.73785 1.47385 1.22960 0.95712 0.94881 0.90858 1.21892 0.94880 0.95897 1.02964 0.92963 0.80902 0.94826 0.94452 0.77382 0.90325 0.89894 0.90567 0.89068 0.79629 0.81330 0.90491 0.84270 0.89720 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.51 27.73 -169.99 -4.71 16.80 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.15 6.52 56.52 0.37 -5.79 16 7 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.04 4.87 -59.91 -0.29 -17.33 16 10 C 0.13 2.48 5.43 -4.04 -0.02 2.46 16 11 C 0.12 1.84 0.71 -90.58 -0.06 1.78 16 12 O -0.56 -8.43 11.70 -35.23 -0.41 -8.84 16 13 C -0.16 -2.31 4.88 -26.61 -0.13 -2.44 16 14 C 0.11 1.54 6.20 -3.71 -0.02 1.51 16 15 N -0.58 -7.44 2.97 -173.87 -0.52 -7.96 16 16 C 0.57 7.62 7.65 -12.31 -0.09 7.53 16 17 O -0.53 -8.60 14.78 5.32 0.08 -8.52 16 18 C 0.04 0.43 6.61 -82.97 -0.55 -0.12 16 19 N -0.39 -3.23 6.07 -9.70 -0.06 -3.29 16 20 C 0.06 0.33 11.17 -17.47 -0.20 0.14 16 21 C 0.10 0.58 7.35 -39.12 -0.29 0.29 16 22 F -0.11 -0.63 17.28 2.25 0.04 -0.59 16 23 C -0.16 -0.94 10.14 -39.18 -0.40 -1.34 16 24 C 0.15 1.34 7.30 -38.84 -0.28 1.06 16 25 F -0.09 -1.07 15.58 2.25 0.04 -1.03 16 26 C 0.08 0.87 5.66 -3.72 -0.02 0.85 16 27 C -0.12 -1.44 5.11 -26.62 -0.14 -1.58 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.36 7.69 3.41 -40.82 -0.14 7.55 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.38 5.60 8.19 45.56 0.37 5.97 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.31 6.53 -51.93 -0.34 0.97 16 35 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 36 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 37 H 0.19 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 40 H 0.14 1.35 3.96 -87.57 -0.35 1.01 16 41 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -33.48 347.78 -6.46 -39.94 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.18 Total: 10.61 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -2.46 Total: 3.21 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.09 Total: -56.82 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.33 Total: -17.36 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.07 Total: -1.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.48 -6.46 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755151222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.657 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds