Wall clock time and date at job start Sat Apr 11 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48507 * 109.46895 * 239.99792 * 3 2 1 5 5 H 1.48494 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46981 * 120.00306 * 3 2 1 7 7 C 1.38800 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.80990 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.84606 * 336.18925 * 14 13 11 16 16 C 1.53775 * 113.61531 * 107.50126 * 14 13 11 17 17 C 1.53775 * 87.08097 * 89.11408 * 16 14 13 18 18 H 1.09000 * 113.61796 * 270.87964 * 17 16 14 19 19 C 1.53010 * 113.69051 * 139.98978 * 17 16 14 20 20 N 1.46901 * 109.46627 * 87.46186 * 19 17 16 21 21 C 1.46905 * 110.99711 * 180.02562 * 20 19 17 22 22 C 1.50705 * 109.47014 * 180.02562 * 21 20 19 23 23 N 1.30893 * 125.90605 * 274.68811 * 22 21 20 24 24 C 1.33542 * 109.77653 * 179.87097 * 23 22 21 25 25 O 1.35864 * 125.58793 * 180.16719 * 24 23 22 26 26 N 1.31074 * 108.82263 * 0.39946 * 24 23 22 27 27 N 1.34347 * 125.91251 * 95.00158 * 22 21 20 28 28 H 0.96992 * 126.78001 * 0.02562 * 27 22 21 29 29 C 1.53777 * 87.08356 * 25.43295 * 17 16 14 30 30 H 0.96994 * 119.99792 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47206 * 60.00591 * 10 9 7 32 32 H 1.08994 * 109.47584 * 300.00054 * 10 9 7 33 33 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 34 34 H 1.09003 * 113.61160 * 203.66277 * 16 14 13 35 35 H 1.09002 * 113.61807 * 334.56510 * 16 14 13 36 36 H 1.08990 * 109.47344 * 207.46464 * 19 17 16 37 37 H 1.09000 * 109.46903 * 327.47037 * 19 17 16 38 38 H 1.00901 * 111.00419 * 56.05314 * 20 19 17 39 39 H 1.09000 * 109.47011 * 300.00421 * 21 20 19 40 40 H 1.08998 * 109.46983 * 60.00172 * 21 20 19 41 41 H 0.96695 * 114.00366 * 270.29680 * 25 24 23 42 42 H 1.09003 * 113.61538 * 220.02028 * 29 17 16 43 43 H 1.08996 * 113.69047 * 89.12574 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.3212 -7.7893 0.4025 16 6 2.5128 -8.4399 -1.3459 17 6 3.8849 -8.8974 -0.8235 18 1 4.6921 -8.1999 -1.0473 19 6 4.2306 -10.3428 -1.1876 20 7 4.8794 -10.3739 -2.5052 21 6 5.2260 -11.7489 -2.8890 22 6 5.8885 -11.7408 -4.2426 23 7 5.2740 -11.7592 -5.3981 24 6 6.1711 -11.7416 -6.3872 25 8 5.8841 -11.7498 -7.7152 26 7 7.3739 -11.7203 -5.8669 27 7 7.2121 -11.7194 -4.4719 28 1 7.9168 -11.7067 -3.8056 29 6 3.3100 -8.7400 0.5941 30 1 -0.4849 0.8400 0.0004 31 1 3.1245 -3.7313 0.8895 32 1 3.1246 -3.7313 -0.8904 33 1 3.8011 -6.1834 -0.0004 34 1 1.8092 -9.2581 -1.4995 35 1 2.5735 -7.7663 -2.2006 36 1 4.9080 -10.7539 -0.4392 37 1 3.3180 -10.9380 -1.2179 38 1 5.6932 -9.7776 -2.5218 39 1 5.9101 -12.1702 -2.1524 40 1 4.3201 -12.3536 -2.9311 41 1 5.8153 -12.6353 -8.0974 42 1 4.0142 -8.3086 1.3055 43 1 2.8241 -9.6396 0.9720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755466396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:28 Heat of formation + Delta-G solvation = 40.566431 kcal Electronic energy + Delta-G solvation = -25345.651550 eV Core-core repulsion = 21362.401906 eV Total energy + Delta-G solvation = -3983.249644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.73799 -40.18960 -38.33158 -37.95760 -36.39054 -33.19658 -32.82567 -32.41528 -31.71904 -29.41116 -28.13889 -25.89440 -25.53207 -25.24762 -23.02058 -22.48263 -21.63492 -20.79309 -19.37502 -19.05842 -18.15016 -17.83198 -16.74830 -16.59077 -16.26596 -16.03207 -15.67452 -15.33148 -14.82609 -14.79581 -14.71471 -14.28367 -14.13480 -13.83732 -13.51143 -13.14566 -12.95973 -12.68432 -12.56566 -12.45107 -12.35121 -12.19159 -11.70650 -11.20208 -11.03392 -11.02939 -10.76021 -10.69786 -10.63347 -10.43374 -10.40403 -10.13507 -9.80786 -9.39072 -9.07681 -9.04917 -8.83245 -8.22664 -6.48564 -6.20207 -3.90814 0.85668 1.77518 2.15897 2.82079 3.03145 3.08681 3.24410 3.28427 3.31847 3.58027 3.71274 3.83629 4.13934 4.21706 4.33411 4.39044 4.52837 4.65140 4.76365 4.90025 5.04861 5.11812 5.14725 5.15246 5.20123 5.36810 5.49487 5.54946 5.56560 5.59117 5.83209 5.88924 5.92165 6.01722 6.10670 6.15016 6.23479 6.38908 6.65319 6.74001 6.92902 7.44765 7.60382 7.72740 8.36193 8.63372 9.24870 10.87149 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.001652 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.985898 B =16944.675813 C =18163.543883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.121 3.879 15 H 0.102 0.898 16 C -0.137 4.137 17 C -0.109 4.109 18 H 0.089 0.911 19 C 0.072 3.928 20 N -0.678 5.678 21 C 0.137 3.863 22 C 0.306 3.694 23 N -0.525 5.525 24 C 0.405 3.595 25 O -0.438 6.438 26 N -0.310 5.310 27 N -0.468 5.468 28 H 0.445 0.555 29 C -0.140 4.140 30 H 0.269 0.731 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.343 0.657 39 H 0.059 0.941 40 H 0.115 0.885 41 H 0.409 0.591 42 H 0.073 0.927 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.278 -29.820 -3.388 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.375 5.375 14 C 0.015 3.985 15 H 0.120 0.880 16 C -0.176 4.176 17 C -0.127 4.127 18 H 0.108 0.892 19 C -0.056 4.056 20 N -0.310 5.310 21 C 0.005 3.995 22 C 0.026 3.974 23 N -0.263 5.263 24 C 0.086 3.914 25 O -0.238 6.238 26 N -0.153 5.153 27 N -0.191 5.191 28 H 0.291 0.709 29 C -0.179 4.179 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.692 -29.443 -4.387 32.766 hybrid contribution 3.694 0.738 0.788 3.848 sum 17.386 -28.705 -3.599 33.752 Atomic orbital electron populations 1.70005 1.05939 1.27562 1.46747 1.24989 0.95029 0.99005 0.94540 0.86228 0.79241 0.81271 0.78778 1.19943 1.20803 1.19966 1.22829 0.94869 0.91700 1.59083 0.90999 1.85401 1.04865 0.96257 1.96715 1.23534 1.06610 0.95411 1.04885 1.20316 0.86558 0.86239 0.74831 1.90698 1.15380 1.85518 1.47333 1.45693 1.09637 1.04727 1.77401 1.21751 0.98886 0.81109 0.96804 0.88019 1.23403 0.95874 1.00275 0.98034 1.22581 0.98271 0.95567 0.96324 0.89234 1.22040 0.99022 0.97332 0.87229 1.60310 1.32732 1.07306 1.30679 1.20450 1.00219 0.92872 0.85926 1.24039 0.81623 0.95293 0.96406 1.70311 1.34245 1.24626 0.97073 1.21205 0.85579 0.98186 0.86452 1.84954 1.91554 1.34065 1.13226 1.78240 1.20974 1.28565 0.87507 1.47806 1.07960 1.57533 1.05767 0.70880 1.23351 0.98925 0.99591 0.96051 0.92124 0.89259 0.89236 0.76925 0.89230 0.90807 0.94663 0.89978 0.83856 0.92348 0.86715 0.73409 0.90878 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.90 7.85 -10.98 -0.09 9.81 16 12 O -0.52 -11.71 15.46 5.56 0.09 -11.63 16 13 N -0.72 -9.30 5.26 -53.02 -0.28 -9.58 16 14 C 0.12 1.32 4.32 -67.12 -0.29 1.03 16 15 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16 16 C -0.14 -1.31 7.43 -25.92 -0.19 -1.50 16 17 C -0.11 -0.70 3.77 -89.81 -0.34 -1.04 16 18 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 19 C 0.07 0.34 5.53 -3.82 -0.02 0.31 16 20 N -0.68 -3.62 6.49 -115.05 -0.75 -4.37 16 21 C 0.14 0.54 6.31 -4.97 -0.03 0.50 16 22 C 0.31 2.09 7.74 -155.71 -1.21 0.88 16 23 N -0.53 -5.41 11.21 -12.10 -0.14 -5.54 16 24 C 0.41 4.13 9.46 -91.24 -0.86 3.27 16 25 O -0.44 -3.75 13.66 -19.31 -0.26 -4.01 16 26 N -0.31 -2.93 12.81 29.18 0.37 -2.55 16 27 N -0.47 -2.73 7.44 32.62 0.24 -2.49 16 28 H 0.44 0.89 8.96 -182.35 -1.63 -0.75 16 29 C -0.14 -0.97 7.39 -25.92 -0.19 -1.16 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.40 3.96 8.70 -40.82 -0.36 3.60 16 34 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.08 0.39 7.85 -51.93 -0.41 -0.01 16 38 H 0.34 1.63 8.72 -39.29 -0.34 1.28 16 39 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.41 1.11 9.06 45.56 0.41 1.53 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -39.79 385.95 -10.68 -50.47 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.47 Total: 0.57 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.80 Total: -3.79 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.19 Total: -50.07 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.18 Total: -15.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.79 -10.68 -50.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755466396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.038 kcal (2) G-P(sol) polarization free energy of solvation -39.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds