Wall clock time and date at job start Sat Apr 11 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48507 * 109.46895 * 239.99792 * 3 2 1 5 5 H 1.48494 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46981 * 120.00306 * 3 2 1 7 7 C 1.38800 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.80990 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.84606 * 336.18925 * 14 13 11 16 16 C 1.53775 * 113.61531 * 107.50126 * 14 13 11 17 17 C 1.53775 * 87.08097 * 89.11408 * 16 14 13 18 18 H 1.09000 * 113.61796 * 270.87964 * 17 16 14 19 19 C 1.53010 * 113.69051 * 139.98978 * 17 16 14 20 20 N 1.46901 * 109.46627 * 87.46186 * 19 17 16 21 21 C 1.46905 * 110.99711 * 180.02562 * 20 19 17 22 22 C 1.50705 * 109.47014 * 180.02562 * 21 20 19 23 23 N 1.30893 * 125.90605 * 274.68811 * 22 21 20 24 24 C 1.33542 * 109.77653 * 179.87097 * 23 22 21 25 25 O 1.35864 * 125.58793 * 180.16719 * 24 23 22 26 26 N 1.31074 * 108.82263 * 0.39946 * 24 23 22 27 27 N 1.34347 * 125.91251 * 95.00158 * 22 21 20 28 28 H 0.96992 * 126.78001 * 0.02562 * 27 22 21 29 29 C 1.53777 * 87.08356 * 25.43295 * 17 16 14 30 30 H 0.96994 * 119.99792 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47206 * 60.00591 * 10 9 7 32 32 H 1.08994 * 109.47584 * 300.00054 * 10 9 7 33 33 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 34 34 H 1.09003 * 113.61160 * 203.66277 * 16 14 13 35 35 H 1.09002 * 113.61807 * 334.56510 * 16 14 13 36 36 H 1.08990 * 109.47344 * 207.46464 * 19 17 16 37 37 H 1.09000 * 109.46903 * 327.47037 * 19 17 16 38 38 H 1.00901 * 111.00419 * 56.05314 * 20 19 17 39 39 H 1.09000 * 109.47011 * 300.00421 * 21 20 19 40 40 H 1.08998 * 109.46983 * 60.00172 * 21 20 19 41 41 H 0.96695 * 114.00366 * 270.29680 * 25 24 23 42 42 H 1.09003 * 113.61538 * 220.02028 * 29 17 16 43 43 H 1.08996 * 113.69047 * 89.12574 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.3212 -7.7893 0.4025 16 6 2.5128 -8.4399 -1.3459 17 6 3.8849 -8.8974 -0.8235 18 1 4.6921 -8.1999 -1.0473 19 6 4.2306 -10.3428 -1.1876 20 7 4.8794 -10.3739 -2.5052 21 6 5.2260 -11.7489 -2.8890 22 6 5.8885 -11.7408 -4.2426 23 7 5.2740 -11.7592 -5.3981 24 6 6.1711 -11.7416 -6.3872 25 8 5.8841 -11.7498 -7.7152 26 7 7.3739 -11.7203 -5.8669 27 7 7.2121 -11.7194 -4.4719 28 1 7.9168 -11.7067 -3.8056 29 6 3.3100 -8.7400 0.5941 30 1 -0.4849 0.8400 0.0004 31 1 3.1245 -3.7313 0.8895 32 1 3.1246 -3.7313 -0.8904 33 1 3.8011 -6.1834 -0.0004 34 1 1.8092 -9.2581 -1.4995 35 1 2.5735 -7.7663 -2.2006 36 1 4.9080 -10.7539 -0.4392 37 1 3.3180 -10.9380 -1.2179 38 1 5.6932 -9.7776 -2.5218 39 1 5.9101 -12.1702 -2.1524 40 1 4.3201 -12.3536 -2.9311 41 1 5.8153 -12.6353 -8.0974 42 1 4.0142 -8.3086 1.3055 43 1 2.8241 -9.6396 0.9720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755466396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:27 Heat of formation + Delta-G solvation = 3.202581 kcal Electronic energy + Delta-G solvation = -25347.271768 eV Core-core repulsion = 21362.401906 eV Total energy + Delta-G solvation = -3984.869862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.30145 -41.18982 -39.43932 -38.57348 -36.89583 -34.59028 -34.35181 -33.41539 -32.34347 -30.76287 -28.83425 -27.66040 -26.56571 -25.86033 -23.61865 -23.07197 -22.23127 -22.01875 -20.20315 -19.81514 -19.64697 -18.69335 -17.93634 -17.15116 -17.07218 -16.95671 -16.87522 -16.45385 -16.31429 -15.88089 -15.61589 -15.29063 -14.92074 -14.76297 -14.54152 -14.35161 -14.04968 -13.74166 -13.36082 -13.25711 -13.16913 -13.04527 -12.86719 -12.84811 -12.62568 -12.53359 -11.81414 -11.70410 -11.40611 -11.25241 -11.12770 -11.10268 -11.04253 -10.93393 -10.71752 -10.27841 -9.99248 -9.35024 -8.66745 -8.34231 -6.12635 0.31700 1.26961 1.31826 1.43972 1.46991 1.56782 1.59972 1.61419 2.26473 2.30862 2.34273 2.99641 3.20383 3.32544 3.43006 3.64562 3.73814 3.85580 3.93722 4.01856 4.06649 4.31098 4.34875 4.49994 4.55097 4.58973 4.71778 4.76096 4.91616 4.91944 4.95499 4.97345 4.98572 5.19695 5.29292 5.36875 5.41556 5.73117 5.91962 6.07303 6.19715 6.36520 6.49823 6.54259 6.88677 7.06691 7.28283 8.74747 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.001652 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.985898 B =16944.675813 C =18163.543883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.694 5.694 14 C 0.099 3.901 15 H 0.074 0.926 16 C -0.140 4.140 17 C -0.093 4.093 18 H 0.094 0.906 19 C 0.078 3.922 20 N -0.699 5.699 21 C 0.141 3.859 22 C 0.314 3.686 23 N -0.566 5.566 24 C 0.390 3.610 25 O -0.453 6.453 26 N -0.335 5.335 27 N -0.451 5.451 28 H 0.462 0.538 29 C -0.118 4.118 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.415 0.585 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.347 0.653 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.428 0.572 42 H 0.086 0.914 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.531 -31.030 -2.187 36.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.347 5.347 14 C -0.007 4.007 15 H 0.092 0.908 16 C -0.179 4.179 17 C -0.112 4.112 18 H 0.112 0.888 19 C -0.050 4.050 20 N -0.332 5.332 21 C 0.010 3.990 22 C 0.034 3.966 23 N -0.305 5.305 24 C 0.071 3.929 25 O -0.256 6.256 26 N -0.178 5.178 27 N -0.176 5.176 28 H 0.312 0.688 29 C -0.156 4.156 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.252 0.748 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.289 0.711 42 H 0.104 0.896 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.027 -30.716 -3.171 35.263 hybrid contribution 2.705 0.970 0.405 2.902 sum 19.732 -29.746 -2.766 35.803 Atomic orbital electron populations 1.70178 1.07983 1.28674 1.47906 1.26143 0.95981 1.03353 0.93731 0.85000 0.77802 0.75663 0.79500 1.18749 1.20396 1.18524 1.23178 0.95356 0.92002 1.59003 0.89876 1.85594 1.10633 0.99263 1.97054 1.23372 1.03526 0.94423 1.06740 1.20078 0.86292 0.86724 0.74859 1.90685 1.17553 1.86062 1.50237 1.45417 1.09907 1.04484 1.74926 1.22061 0.99027 0.80648 0.98945 0.90821 1.23414 0.98677 0.99792 0.95972 1.22481 0.96285 0.97171 0.95220 0.88776 1.21964 0.99700 0.95707 0.87603 1.60230 1.33399 1.08246 1.31348 1.20599 1.01012 0.92374 0.84990 1.24544 0.81743 0.93593 0.96673 1.70298 1.35497 1.26422 0.98264 1.21430 0.85901 0.98663 0.86900 1.84882 1.91552 1.36155 1.13040 1.78140 1.21070 1.29312 0.89285 1.47693 1.08406 1.56523 1.04934 0.68817 1.23276 0.97478 0.98409 0.96458 0.91991 0.87040 0.87433 0.74761 0.88709 0.93609 0.91869 0.89962 0.83458 0.88299 0.86766 0.71088 0.89555 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.89 7.85 87.66 0.69 20.57 16 12 O -0.57 -26.83 15.46 -3.01 -0.05 -26.88 16 13 N -0.69 -17.05 5.26 -440.04 -2.32 -19.36 16 14 C 0.10 2.06 4.32 45.51 0.20 2.26 16 15 H 0.07 1.99 7.46 -2.39 -0.02 1.97 16 16 C -0.14 -2.54 7.43 31.12 0.23 -2.31 16 17 C -0.09 -0.91 3.77 -10.27 -0.04 -0.94 16 18 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 19 C 0.08 0.42 5.53 86.31 0.48 0.89 16 20 N -0.70 -5.31 6.49 -517.90 -3.36 -8.67 16 21 C 0.14 0.65 6.31 85.56 0.54 1.19 16 22 C 0.31 3.71 7.74 138.24 1.07 4.78 16 23 N -0.57 -11.35 11.21 -304.30 -3.41 -14.76 16 24 C 0.39 7.93 9.46 180.57 1.71 9.64 16 25 O -0.45 -7.89 13.66 -92.02 -1.26 -9.14 16 26 N -0.33 -6.09 12.81 -174.94 -2.24 -8.33 16 27 N -0.45 -4.43 7.44 -50.71 -0.38 -4.81 16 28 H 0.46 0.64 8.96 -213.11 -1.91 -1.27 16 29 C -0.12 -1.22 7.39 31.12 0.23 -0.99 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.11 3.93 8.14 -2.40 -0.02 3.92 16 32 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 33 H 0.42 7.18 8.70 -92.71 -0.81 6.38 16 34 H 0.09 1.61 7.90 -2.39 -0.02 1.59 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.08 0.48 7.85 -2.39 -0.02 0.46 16 38 H 0.35 2.16 8.72 -89.69 -0.78 1.38 16 39 H 0.10 -0.31 8.14 -2.39 -0.02 -0.32 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.43 2.46 9.06 -74.06 -0.67 1.79 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 0.81 8.10 -2.39 -0.02 0.79 16 Total: -1.00 -91.56 385.95 -8.28 -99.83 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -3.07 Total: 11.49 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 6.65 Total: 0.71 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -11.42 Total: -112.13 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.30 Total: -36.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -91.56 -8.28 -99.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755466396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.037 kcal (2) G-P(sol) polarization free energy of solvation -91.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds