Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33319 * 126.81546 * 2 1 4 4 N 1.28519 * 109.43746 * 179.97438 * 3 2 1 5 5 N 1.28708 * 110.64127 * 0.02562 * 4 3 2 6 6 H 0.96996 * 126.04238 * 180.02562 * 5 4 3 7 7 C 1.37005 * 126.81258 * 179.68521 * 2 1 3 8 8 C 1.47233 * 127.18654 * 0.02562 * 7 2 1 9 9 O 1.21619 * 120.00358 * 103.72365 * 8 7 2 10 10 N 1.34786 * 120.00071 * 283.71830 * 8 7 2 11 11 C 1.46499 * 119.99591 * 5.21897 * 10 8 7 12 12 C 1.46494 * 120.00064 * 185.22250 * 10 8 7 13 13 C 1.52999 * 109.47355 * 90.00037 * 12 10 8 14 14 H 1.08996 * 109.46941 * 65.00149 * 13 12 10 15 15 C 1.53001 * 109.47084 * 185.00099 * 13 12 10 16 16 N 1.46494 * 109.47020 * 304.99622 * 13 12 10 17 17 C 1.34777 * 120.00194 * 154.99981 * 16 13 12 18 18 O 1.21287 * 119.99801 * 0.02562 * 17 16 13 19 19 C 1.50694 * 120.00317 * 180.02562 * 17 16 13 20 20 S 1.81002 * 109.47268 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00295 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00174 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00356 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99718 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00252 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47414 * 120.00186 * 25 23 21 28 28 H 1.48504 * 109.46903 * 240.00057 * 25 23 21 29 29 H 1.09002 * 109.47423 * 90.02346 * 1 2 3 30 30 H 1.08994 * 109.47762 * 210.02660 * 1 2 3 31 31 H 1.09007 * 109.46866 * 330.02981 * 1 2 3 32 32 H 1.09001 * 109.47306 * 94.53544 * 11 10 8 33 33 H 1.09006 * 109.46985 * 214.53280 * 11 10 8 34 34 H 1.09001 * 109.47255 * 334.53628 * 11 10 8 35 35 H 1.09000 * 109.46959 * 210.00462 * 12 10 8 36 36 H 1.09005 * 109.47159 * 329.99933 * 12 10 8 37 37 H 1.09005 * 109.47390 * 300.00064 * 15 13 12 38 38 H 1.09001 * 109.47577 * 59.99596 * 15 13 12 39 39 H 1.08998 * 109.47373 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00059 * 335.00194 * 16 13 12 41 41 H 1.08995 * 109.47609 * 300.00255 * 19 17 16 42 42 H 1.09005 * 109.47267 * 60.00274 * 19 17 16 43 43 H 0.97001 * 119.99438 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6057 -0.6015 0.0004 6 1 4.4212 -1.1267 0.0010 7 6 2.3279 -1.0968 0.0060 8 6 1.9220 -2.5121 0.0133 9 8 1.9949 -3.1709 -1.0064 10 7 1.4698 -3.0777 1.1501 11 6 1.2736 -2.2580 2.3483 12 6 1.1744 -4.5121 1.1874 13 6 2.4293 -5.2805 1.6067 14 1 2.6936 -5.0138 2.6300 15 6 2.1576 -6.7840 1.5255 16 7 3.5356 -4.9351 0.7107 17 6 4.8092 -5.0571 1.1343 18 8 5.0394 -5.4533 2.2573 19 6 5.9472 -4.7012 0.2128 20 16 7.5209 -4.9691 1.0660 21 6 8.6434 -4.4883 -0.2041 22 1 8.2668 -4.1550 -1.1599 23 6 10.0116 -4.5379 0.0236 24 7 10.4707 -4.9446 1.1883 25 14 11.2017 -4.0274 -1.3228 26 1 10.4383 -3.6141 -2.5276 27 1 12.0297 -2.8904 -0.8467 28 1 12.0831 -5.1727 -1.6646 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 0.2356 -1.9292 2.3977 33 1 1.5107 -2.8470 3.2343 34 1 1.9286 -1.3878 2.3044 35 1 0.3763 -4.7001 1.9055 36 1 0.8588 -4.8439 0.1982 37 1 1.3344 -7.0411 2.1921 38 1 1.8932 -7.0507 0.5022 39 1 3.0517 -7.3314 1.8238 40 1 3.3515 -4.6185 -0.1876 41 1 5.9044 -5.3294 -0.6769 42 1 5.8656 -3.6538 -0.0777 43 1 11.4269 -4.9789 1.3475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756479652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 22.104097 kcal Electronic energy + Delta-G solvation = -27948.523241 eV Core-core repulsion = 23964.473010 eV Total energy + Delta-G solvation = -3984.050231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.66766 -40.57307 -39.12433 -36.66450 -35.00203 -34.26147 -32.75691 -32.47988 -31.55755 -28.78059 -28.45595 -27.93271 -26.56079 -25.53807 -24.08472 -22.60716 -21.78547 -20.40123 -20.28467 -18.59568 -17.95364 -17.58208 -17.05584 -16.51461 -16.33806 -16.26011 -15.45087 -14.98222 -14.84861 -14.37558 -14.23843 -14.17111 -13.70269 -13.53972 -13.37885 -13.32802 -13.12993 -12.94848 -12.86966 -12.59797 -12.37087 -12.28284 -12.10175 -11.95013 -11.48532 -11.33471 -11.10415 -11.07075 -10.88776 -10.79759 -10.63149 -9.86231 -9.55923 -9.51082 -9.29722 -9.12582 -8.95466 -8.30710 -6.57075 -6.27124 -3.98475 0.87535 1.54425 2.01538 2.26103 2.64480 2.96255 3.00302 3.18587 3.25567 3.30152 3.63980 3.78870 4.01559 4.15551 4.35039 4.44429 4.57552 4.69675 4.79405 4.93897 4.99992 5.06505 5.08622 5.14155 5.16789 5.20754 5.26518 5.33031 5.40508 5.47410 5.59152 5.73656 5.75516 5.77788 5.86144 6.03848 6.11580 6.35219 6.55705 6.65161 7.39329 7.55023 7.66847 8.01071 8.30225 8.53110 9.18776 10.80230 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003491 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.597973 B = 8019.154049 C = 9911.508205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 N -0.264 5.264 4 N -0.046 5.046 5 N -0.359 5.359 6 H 0.458 0.542 7 C -0.057 4.057 8 C 0.599 3.401 9 O -0.515 6.515 10 N -0.595 5.595 11 C 0.073 3.927 12 C 0.105 3.895 13 C 0.126 3.874 14 H 0.090 0.910 15 C -0.162 4.162 16 N -0.736 5.736 17 C 0.530 3.470 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.056 6.056 21 C -0.537 4.537 22 H 0.073 0.927 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.403 0.597 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.257 4.793 0.577 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 N -0.131 5.131 4 N -0.026 5.026 5 N -0.084 5.084 6 H 0.305 0.695 7 C -0.194 4.194 8 C 0.383 3.617 9 O -0.389 6.389 10 N -0.328 5.328 11 C -0.070 4.070 12 C -0.017 4.017 13 C 0.020 3.980 14 H 0.108 0.892 15 C -0.221 4.221 16 N -0.393 5.393 17 C 0.316 3.684 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.170 5.830 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.239 0.761 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.986 5.132 2.019 24.612 hybrid contribution 0.589 -0.372 -2.535 2.629 sum -23.397 4.760 -0.516 23.882 Atomic orbital electron populations 1.20211 0.85379 1.03821 1.03790 1.22209 0.98206 0.87160 1.03913 1.74877 0.95285 1.25859 1.17084 1.78282 1.15514 0.91885 1.16949 1.45473 1.08569 1.06722 1.47674 0.69452 1.21686 0.86182 0.96191 1.15292 1.16867 0.77653 0.83619 0.83577 1.90846 1.53591 1.62567 1.31863 1.47648 1.64779 1.09375 1.10973 1.21960 1.02154 0.95843 0.87026 1.22036 0.97096 0.77908 1.04690 1.21319 0.86034 0.94806 0.95876 0.89151 1.22129 1.02781 0.94953 1.02234 1.46303 1.05221 1.69850 1.17942 1.20321 0.83151 0.76902 0.88007 1.90696 1.84051 1.44244 1.20084 1.23533 1.00348 1.03899 1.02633 1.85386 0.90596 1.87139 1.19875 1.22904 0.93069 1.51504 1.01061 0.90906 1.24987 0.97447 0.94710 0.96332 1.70025 1.14349 1.43893 1.21929 0.86126 0.80202 0.78382 0.80867 1.19596 1.20493 1.20495 0.89879 0.90636 0.89541 0.91386 0.90074 0.90938 0.88131 0.88497 0.91605 0.92182 0.91134 0.76053 0.89145 0.90138 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.28 36.00 0.37 -0.09 16 2 C 0.03 0.25 6.95 -82.40 -0.57 -0.32 16 3 N -0.26 -3.32 12.35 33.51 0.41 -2.91 16 4 N -0.05 -0.59 13.35 60.35 0.81 0.21 16 5 N -0.36 -4.04 7.07 33.31 0.24 -3.80 16 6 H 0.46 4.57 8.96 -190.34 -1.71 2.86 16 7 C -0.06 -0.60 5.18 -82.33 -0.43 -1.03 16 8 C 0.60 6.12 6.45 -12.60 -0.08 6.04 16 9 O -0.51 -6.55 14.73 5.26 0.08 -6.47 16 10 N -0.60 -4.58 2.77 -182.92 -0.51 -5.09 16 11 C 0.07 0.41 10.01 59.85 0.60 1.01 16 12 C 0.11 0.73 5.17 -4.05 -0.02 0.71 16 13 C 0.13 1.28 2.88 -67.93 -0.20 1.08 16 14 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 15 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 16 N -0.74 -9.75 4.48 -53.81 -0.24 -9.99 16 17 C 0.53 9.53 7.81 -10.99 -0.09 9.44 16 18 O -0.52 -11.06 15.53 5.55 0.09 -10.98 16 19 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 20 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 21 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 25 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.35 7.17 -51.93 -0.37 -0.02 16 31 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.07 0.51 6.48 -51.93 -0.34 0.17 16 35 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.10 0.72 7.36 -51.93 -0.38 0.33 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 5.18 6.05 -40.82 -0.25 4.93 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.08 1.45 8.14 -51.91 -0.42 1.03 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -36.45 380.77 -6.71 -43.16 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.17 Total: 2.61 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 0.36 Total: 0.01 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.44 Total: -46.71 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.16 Total: -17.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.45 -6.71 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756479652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.264 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds