Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33319 * 126.81546 * 2 1 4 4 N 1.28519 * 109.43746 * 179.97438 * 3 2 1 5 5 N 1.28708 * 110.64127 * 0.02562 * 4 3 2 6 6 H 0.96996 * 126.04238 * 180.02562 * 5 4 3 7 7 C 1.37005 * 126.81258 * 179.68521 * 2 1 3 8 8 C 1.47233 * 127.18654 * 0.02562 * 7 2 1 9 9 O 1.21619 * 120.00358 * 103.72365 * 8 7 2 10 10 N 1.34786 * 120.00071 * 283.71830 * 8 7 2 11 11 C 1.46499 * 119.99591 * 5.21897 * 10 8 7 12 12 C 1.46494 * 120.00064 * 185.22250 * 10 8 7 13 13 C 1.52999 * 109.47355 * 90.00037 * 12 10 8 14 14 H 1.08996 * 109.46941 * 65.00149 * 13 12 10 15 15 C 1.53001 * 109.47084 * 185.00099 * 13 12 10 16 16 N 1.46494 * 109.47020 * 304.99622 * 13 12 10 17 17 C 1.34777 * 120.00194 * 154.99981 * 16 13 12 18 18 O 1.21287 * 119.99801 * 0.02562 * 17 16 13 19 19 C 1.50694 * 120.00317 * 180.02562 * 17 16 13 20 20 S 1.81002 * 109.47268 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00295 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00174 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00356 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99718 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00252 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47414 * 120.00186 * 25 23 21 28 28 H 1.48504 * 109.46903 * 240.00057 * 25 23 21 29 29 H 1.09002 * 109.47423 * 90.02346 * 1 2 3 30 30 H 1.08994 * 109.47762 * 210.02660 * 1 2 3 31 31 H 1.09007 * 109.46866 * 330.02981 * 1 2 3 32 32 H 1.09001 * 109.47306 * 94.53544 * 11 10 8 33 33 H 1.09006 * 109.46985 * 214.53280 * 11 10 8 34 34 H 1.09001 * 109.47255 * 334.53628 * 11 10 8 35 35 H 1.09000 * 109.46959 * 210.00462 * 12 10 8 36 36 H 1.09005 * 109.47159 * 329.99933 * 12 10 8 37 37 H 1.09005 * 109.47390 * 300.00064 * 15 13 12 38 38 H 1.09001 * 109.47577 * 59.99596 * 15 13 12 39 39 H 1.08998 * 109.47373 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00059 * 335.00194 * 16 13 12 41 41 H 1.08995 * 109.47609 * 300.00255 * 19 17 16 42 42 H 1.09005 * 109.47267 * 60.00274 * 19 17 16 43 43 H 0.97001 * 119.99438 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6057 -0.6015 0.0004 6 1 4.4212 -1.1267 0.0010 7 6 2.3279 -1.0968 0.0060 8 6 1.9220 -2.5121 0.0133 9 8 1.9949 -3.1709 -1.0064 10 7 1.4698 -3.0777 1.1501 11 6 1.2736 -2.2580 2.3483 12 6 1.1744 -4.5121 1.1874 13 6 2.4293 -5.2805 1.6067 14 1 2.6936 -5.0138 2.6300 15 6 2.1576 -6.7840 1.5255 16 7 3.5356 -4.9351 0.7107 17 6 4.8092 -5.0571 1.1343 18 8 5.0394 -5.4533 2.2573 19 6 5.9472 -4.7012 0.2128 20 16 7.5209 -4.9691 1.0660 21 6 8.6434 -4.4883 -0.2041 22 1 8.2668 -4.1550 -1.1599 23 6 10.0116 -4.5379 0.0236 24 7 10.4707 -4.9446 1.1883 25 14 11.2017 -4.0274 -1.3228 26 1 10.4383 -3.6141 -2.5276 27 1 12.0297 -2.8904 -0.8467 28 1 12.0831 -5.1727 -1.6646 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 0.2356 -1.9292 2.3977 33 1 1.5107 -2.8470 3.2343 34 1 1.9286 -1.3878 2.3044 35 1 0.3763 -4.7001 1.9055 36 1 0.8588 -4.8439 0.1982 37 1 1.3344 -7.0411 2.1921 38 1 1.8932 -7.0507 0.5022 39 1 3.0517 -7.3314 1.8238 40 1 3.3515 -4.6185 -0.1876 41 1 5.9044 -5.3294 -0.6769 42 1 5.8656 -3.6538 -0.0777 43 1 11.4269 -4.9789 1.3475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756479652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -6.030128 kcal Electronic energy + Delta-G solvation = -27949.743232 eV Core-core repulsion = 23964.473010 eV Total energy + Delta-G solvation = -3985.270223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.51332 -41.44772 -40.37786 -37.54235 -35.94825 -35.06867 -34.63091 -33.61764 -32.69154 -30.15657 -29.15413 -28.50499 -27.70334 -27.23802 -24.91854 -23.47367 -22.73408 -21.58829 -21.08229 -19.93260 -19.31132 -18.43502 -17.95539 -17.85642 -17.26090 -17.11490 -16.92522 -16.47243 -16.28704 -15.97005 -15.15937 -14.90522 -14.77839 -14.62822 -14.34409 -14.16169 -14.04457 -13.89123 -13.61080 -13.43801 -13.36002 -13.20707 -13.10380 -12.98883 -12.95798 -12.82953 -12.61741 -12.27900 -12.14276 -11.76222 -11.74291 -11.45335 -11.20233 -10.99052 -10.34982 -10.34082 -10.24639 -9.87353 -8.71404 -8.39687 -6.17491 0.04888 0.75016 1.18808 1.21897 1.37113 1.42125 1.49960 1.53593 1.56488 1.91503 2.21698 2.27599 2.94777 3.06673 3.26320 3.31285 3.62545 3.70920 3.91962 4.03798 4.04365 4.08430 4.16049 4.32314 4.38578 4.46473 4.55147 4.61475 4.70904 4.72446 4.77489 4.82208 4.90731 5.00913 5.14644 5.23280 5.34657 5.37556 5.49959 5.51765 5.95222 6.15191 6.39252 6.67465 7.02358 7.14445 7.17005 8.69514 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003491 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.597973 B = 8019.154049 C = 9911.508205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.030 3.970 3 N -0.287 5.287 4 N -0.075 5.075 5 N -0.359 5.359 6 H 0.459 0.541 7 C -0.060 4.060 8 C 0.599 3.401 9 O -0.544 6.544 10 N -0.587 5.587 11 C 0.067 3.933 12 C 0.111 3.889 13 C 0.120 3.880 14 H 0.080 0.920 15 C -0.157 4.157 16 N -0.715 5.715 17 C 0.534 3.466 18 O -0.556 6.556 19 C -0.135 4.135 20 S -0.135 6.135 21 C -0.549 4.549 22 H 0.079 0.921 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.995 3.005 26 H -0.260 1.260 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.408 0.592 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.929 4.998 -0.236 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 N -0.153 5.153 4 N -0.055 5.055 5 N -0.085 5.085 6 H 0.307 0.693 7 C -0.197 4.197 8 C 0.383 3.617 9 O -0.420 6.420 10 N -0.317 5.317 11 C -0.075 4.075 12 C -0.011 4.011 13 C 0.015 3.985 14 H 0.098 0.902 15 C -0.216 4.216 16 N -0.371 5.371 17 C 0.320 3.680 18 O -0.434 6.434 19 C -0.286 4.286 20 S 0.092 5.908 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.188 4.188 24 N -0.544 5.544 25 Si 0.817 3.183 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.246 0.754 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.713 5.353 1.215 27.271 hybrid contribution 1.259 -0.461 -2.244 2.614 sum -25.454 4.892 -1.029 25.941 Atomic orbital electron populations 1.20409 0.82642 1.05465 1.04691 1.22825 0.99724 0.86169 1.02378 1.74844 0.95543 1.27047 1.17854 1.78251 1.16104 0.92638 1.18480 1.45501 1.09129 1.06468 1.47399 0.69271 1.21923 0.85883 0.96766 1.15145 1.16863 0.77672 0.83247 0.83930 1.90833 1.55145 1.63020 1.33034 1.47738 1.63353 1.09907 1.10734 1.22177 1.03796 0.95197 0.86305 1.22162 0.96081 0.76656 1.06155 1.21649 0.86083 0.96146 0.94669 0.90231 1.22083 1.02344 0.93606 1.03545 1.46193 1.04378 1.68019 1.18505 1.19950 0.84203 0.76853 0.87014 1.90685 1.84727 1.46459 1.21516 1.23402 0.97389 1.05370 1.02441 1.85479 0.95206 1.87673 1.22426 1.23219 0.93769 1.51491 1.01246 0.90317 1.26056 0.99413 0.94432 0.98859 1.70170 1.14929 1.45123 1.24228 0.84964 0.77501 0.78143 0.77726 1.18397 1.19763 1.19791 0.89233 0.88543 0.88333 0.88160 0.89058 0.92539 0.83644 0.88215 0.88188 0.91345 0.94724 0.75433 0.88176 0.88173 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.28 71.23 0.73 0.00 16 2 C 0.03 0.55 6.95 42.04 0.29 0.85 16 3 N -0.29 -7.11 12.35 -47.89 -0.59 -7.70 16 4 N -0.07 -1.97 13.35 37.02 0.49 -1.47 16 5 N -0.36 -8.10 7.07 -48.52 -0.34 -8.44 16 6 H 0.46 9.39 8.96 -219.91 -1.97 7.42 16 7 C -0.06 -1.20 5.18 40.41 0.21 -0.99 16 8 C 0.60 11.06 6.45 86.61 0.56 11.62 16 9 O -0.54 -12.88 14.73 -4.09 -0.06 -12.94 16 10 N -0.59 -7.26 2.77 -850.88 -2.36 -9.62 16 11 C 0.07 0.55 10.01 127.77 1.28 1.83 16 12 C 0.11 1.11 5.17 86.38 0.45 1.56 16 13 C 0.12 2.16 2.88 44.99 0.13 2.29 16 14 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 15 C -0.16 -2.61 9.48 71.98 0.68 -1.93 16 16 N -0.71 -18.12 4.48 -442.55 -1.98 -20.11 16 17 C 0.53 19.26 7.81 87.66 0.68 19.95 16 18 O -0.56 -24.39 15.53 -3.05 -0.05 -24.43 16 19 C -0.13 -5.40 6.16 71.23 0.44 -4.96 16 20 S -0.13 -7.39 20.57 -56.49 -1.16 -8.56 16 21 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 22 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 23 C 0.02 1.00 5.49 84.86 0.47 1.47 16 24 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 25 Si 0.99 43.91 29.55 68.60 2.03 45.93 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.53 7.17 -2.39 -0.02 0.52 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 0.22 7.57 -2.39 -0.02 0.21 16 33 H 0.09 0.61 8.11 -2.38 -0.02 0.59 16 34 H 0.06 0.69 6.48 -2.39 -0.02 0.67 16 35 H 0.15 0.27 8.07 -2.39 -0.02 0.25 16 36 H 0.10 1.07 7.36 -2.38 -0.02 1.06 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.41 9.88 6.05 -92.71 -0.56 9.32 16 41 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -82.74 380.77 1.36 -81.38 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -1.47 Total: 20.12 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.57 Total: 0.94 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.50 Total: -102.44 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.11 Total: -37.38 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.56 kcal Total: -82.74 1.36 -81.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756479652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.352 kcal (2) G-P(sol) polarization free energy of solvation -82.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds