Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 N 1.46499 * 109.47125 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99881 * 89.99941 * 4 3 2 6 6 C 1.52995 * 109.47403 * 270.00358 * 5 4 3 7 7 N 1.46501 * 109.47403 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00236 * 179.97438 * 7 6 5 9 9 O 1.21618 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.47232 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.37004 * 127.19363 * 180.02562 * 10 8 7 12 12 N 1.33315 * 106.37501 * 180.02562 * 11 10 8 13 13 N 1.28514 * 109.44158 * 359.97438 * 12 11 10 14 14 N 1.28724 * 110.63693 * 0.02562 * 13 12 11 15 15 H 0.96991 * 126.03722 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00046 * 270.00050 * 4 3 2 17 17 O 1.21280 * 119.99807 * 179.97438 * 16 4 3 18 18 C 1.50694 * 120.00058 * 0.02562 * 16 4 3 19 19 S 1.81002 * 109.47135 * 179.97438 * 18 16 4 20 20 C 1.76198 * 100.00004 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00033 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00073 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47315 * 89.99531 * 24 22 20 26 26 H 1.48504 * 109.47211 * 210.00152 * 24 22 20 27 27 H 1.48508 * 109.47003 * 329.99895 * 24 22 20 28 28 H 1.08999 * 109.46892 * 299.99646 * 1 2 3 29 29 H 1.08998 * 109.46903 * 60.00161 * 1 2 3 30 30 H 1.09006 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46806 * 239.99882 * 2 1 3 32 32 H 1.09002 * 109.46828 * 120.00331 * 2 1 3 33 33 H 1.08998 * 109.46790 * 59.99839 * 3 2 1 34 34 H 1.08998 * 109.47075 * 299.99733 * 3 2 1 35 35 H 1.09007 * 109.47257 * 149.99841 * 5 4 3 36 36 H 1.09001 * 109.46935 * 30.00006 * 5 4 3 37 37 H 1.08996 * 109.47721 * 59.99705 * 6 5 4 38 38 H 1.09005 * 109.47236 * 299.99883 * 6 5 4 39 39 H 0.97001 * 119.99684 * 0.02562 * 7 6 5 40 40 H 1.08000 * 126.80852 * 359.97438 * 11 10 8 41 41 H 1.09006 * 109.47147 * 299.99713 * 18 16 4 42 42 H 1.08999 * 109.47427 * 59.99806 * 18 16 4 43 43 H 0.96995 * 119.99614 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2381 1.4423 -1.2678 6 6 4.4932 -0.0002 -1.7093 7 7 5.2267 -0.0004 -2.9774 8 6 5.5644 -1.1677 -3.5604 9 8 5.2597 -2.2209 -3.0340 10 6 6.3011 -1.1679 -4.8352 11 6 6.7155 -2.2594 -5.5520 12 7 7.3395 -1.7858 -6.6307 13 7 7.3239 -0.5010 -6.6043 14 7 6.7157 -0.0763 -5.5523 15 1 6.5758 0.8524 -5.3100 16 6 4.1784 1.4426 1.1681 17 8 5.3912 1.4421 1.1686 18 6 3.4244 1.4422 2.4728 19 16 4.6001 1.4418 3.8491 20 6 3.4795 1.4422 5.2088 21 1 2.4143 1.4421 5.0306 22 6 3.9657 1.4425 6.5088 23 7 5.2640 1.4431 6.7259 24 14 2.7777 1.4422 7.9504 25 1 2.4633 0.0421 8.3325 26 1 3.3982 2.1427 9.1034 27 1 1.5268 2.1417 7.5611 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 5.1905 1.9562 -1.1372 36 1 3.6493 1.9560 -2.0278 37 1 3.5409 -0.5141 -1.8399 38 1 5.0820 -0.5141 -0.9493 39 1 5.4700 0.8396 -3.3970 40 1 6.5669 -3.2976 -5.2939 41 1 2.7974 2.3320 2.5304 42 1 2.7981 0.5521 2.5303 43 1 5.6037 1.4429 7.6344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759062605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = 20.469623 kcal Electronic energy + Delta-G solvation = -26460.683229 eV Core-core repulsion = 22476.562122 eV Total energy + Delta-G solvation = -3984.121107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.84029 -40.23511 -39.59904 -36.54696 -35.51612 -34.06872 -33.03827 -32.47306 -31.98177 -30.54121 -28.39560 -26.31726 -25.56403 -24.89304 -23.64672 -22.88941 -21.89314 -21.49679 -20.03414 -19.16327 -17.81779 -17.26263 -17.04316 -16.89144 -16.60128 -15.92087 -15.55960 -15.34954 -14.84761 -14.77678 -14.76634 -14.52898 -14.02052 -13.94857 -13.74547 -13.25696 -12.74439 -12.69979 -12.63201 -12.30931 -12.22511 -11.98770 -11.78222 -11.58479 -11.44023 -11.26874 -11.10476 -11.06947 -10.86373 -10.79940 -10.75108 -10.06314 -9.86158 -9.62039 -9.54344 -9.10988 -8.82696 -8.29264 -6.56035 -6.26199 -3.97442 0.37463 1.81382 1.88831 2.25124 2.58820 2.87794 2.90199 3.19120 3.21953 3.26779 3.50816 3.81314 4.14467 4.15454 4.43428 4.47575 4.56197 4.64951 4.69760 4.80829 4.94039 5.00755 5.09101 5.13978 5.21223 5.40992 5.43984 5.49624 5.58676 5.60407 5.62564 5.71299 5.80269 5.86647 5.93501 6.01713 6.03334 6.15833 6.45319 6.74820 7.31435 7.47858 7.55119 7.75108 8.30507 8.37453 9.19244 10.81201 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.002126 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.046704 B =13165.682909 C =14011.744029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.110 3.890 4 N -0.618 5.618 5 C 0.108 3.892 6 C 0.100 3.900 7 N -0.720 5.720 8 C 0.595 3.405 9 O -0.506 6.506 10 C -0.065 4.065 11 C 0.035 3.965 12 N -0.269 5.269 13 N -0.045 5.045 14 N -0.375 5.375 15 H 0.451 0.549 16 C 0.535 3.465 17 O -0.511 6.511 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.395 0.605 40 H 0.206 0.794 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 0.147 -23.604 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.013 4.013 4 N -0.353 5.353 5 C -0.016 4.016 6 C -0.024 4.024 7 N -0.373 5.373 8 C 0.378 3.622 9 O -0.378 6.378 10 C -0.199 4.199 11 C -0.124 4.124 12 N -0.134 5.134 13 N -0.027 5.027 14 N -0.102 5.102 15 H 0.297 0.703 16 C 0.324 3.676 17 O -0.384 6.384 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.229 0.771 40 H 0.223 0.777 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.787 -0.353 -24.332 24.628 hybrid contribution -2.743 0.718 1.858 3.390 sum -6.530 0.364 -22.475 23.407 Atomic orbital electron populations 1.21695 0.95003 1.02127 1.01912 1.22086 0.96362 0.97150 1.03142 1.21722 0.78859 0.97191 1.03550 1.47872 1.06674 1.75861 1.04919 1.21439 0.99021 0.94988 0.86191 1.22045 0.97168 0.98901 0.84290 1.45716 1.58769 1.07672 1.25101 1.16701 0.78921 0.84537 0.82030 1.90920 1.53358 1.30719 1.62821 1.22393 1.10147 0.88390 0.99019 1.23971 0.97007 1.00716 0.90693 1.75032 1.17808 1.00349 1.20193 1.78252 1.12232 1.07460 1.04777 1.45608 1.37772 1.10686 1.16160 0.70256 1.20437 0.87928 0.74678 0.84599 1.90710 1.13715 1.47260 1.86719 1.23582 1.04598 1.04891 0.97017 1.85413 1.07985 1.96722 0.93378 1.22836 0.94255 1.59100 0.92129 0.90910 1.24996 0.95685 0.94495 0.98400 1.70013 1.11758 1.46736 1.21706 0.86171 0.80244 0.78396 0.80708 1.20231 1.20739 1.19686 0.92241 0.92799 0.92382 0.91643 0.90997 0.89551 0.90483 0.89066 0.90168 0.90376 0.89900 0.77125 0.77720 0.89186 0.89041 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.15 -1.33 6.26 -26.73 -0.17 -1.50 16 3 C 0.11 0.98 5.26 -4.04 -0.02 0.96 16 4 N -0.62 -7.20 2.47 -173.69 -0.43 -7.63 16 5 C 0.11 0.94 5.56 -4.04 -0.02 0.91 16 6 C 0.10 0.93 6.00 -4.04 -0.02 0.90 16 7 N -0.72 -4.93 5.55 -61.45 -0.34 -5.27 16 8 C 0.60 5.48 7.81 -12.61 -0.10 5.38 16 9 O -0.51 -6.70 16.92 5.26 0.09 -6.61 16 10 C -0.07 -0.50 7.17 -82.33 -0.59 -1.09 16 11 C 0.04 0.31 11.87 -17.36 -0.21 0.10 16 12 N -0.27 -2.73 12.35 30.47 0.38 -2.35 16 13 N -0.04 -0.40 13.35 60.35 0.81 0.41 16 14 N -0.37 -2.13 6.98 33.31 0.23 -1.89 16 15 H 0.45 0.66 8.32 -190.33 -1.58 -0.93 16 16 C 0.54 9.17 7.69 -10.99 -0.08 9.09 16 17 O -0.51 -10.68 15.44 5.56 0.09 -10.59 16 18 C -0.15 -2.86 4.71 36.00 0.17 -2.69 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.53 -14.83 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 24 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.56 6.26 -51.93 -0.33 0.24 16 32 H 0.07 0.80 7.22 -51.93 -0.37 0.43 16 33 H 0.09 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 35 H 0.09 0.90 7.42 -51.92 -0.39 0.51 16 36 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 37 H 0.08 0.72 6.26 -51.93 -0.33 0.40 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.40 1.24 7.74 -40.82 -0.32 0.92 16 40 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.09 1.58 7.40 -51.91 -0.38 1.19 16 42 H 0.09 1.63 7.18 -51.92 -0.37 1.25 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -37.65 381.72 -7.29 -44.94 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.88 Total: -2.64 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.48 Total: -1.27 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 1.38 Total: -41.73 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.65 -7.29 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759062605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.407 kcal (2) G-P(sol) polarization free energy of solvation -37.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds