Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47387 * 2 1 4 4 C 1.53000 * 109.47026 * 119.99939 * 2 1 3 5 5 H 1.09005 * 109.47195 * 300.00134 * 4 2 1 6 6 C 1.53007 * 109.47222 * 59.99868 * 4 2 1 7 7 N 1.46492 * 109.46925 * 175.00092 * 6 4 2 8 8 C 1.34784 * 119.99741 * 179.97438 * 7 6 4 9 9 O 1.21279 * 119.99987 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00055 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47287 * 180.02562 * 10 8 7 12 12 C 1.76198 * 100.00256 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99942 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99992 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00232 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00011 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47118 * 59.99787 * 16 14 12 18 18 H 1.48492 * 109.47138 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46905 * 300.00146 * 16 14 12 20 20 N 1.46504 * 109.47396 * 179.97438 * 4 2 1 21 21 C 1.34768 * 119.99853 * 84.99703 * 20 4 2 22 22 O 1.21612 * 120.00421 * 0.02562 * 21 20 4 23 23 C 1.47234 * 119.99946 * 180.02562 * 21 20 4 24 24 C 1.37004 * 127.19081 * 179.97438 * 23 21 20 25 25 N 1.33330 * 106.37228 * 180.02562 * 24 23 21 26 26 N 1.28514 * 109.43609 * 359.97438 * 25 24 23 27 27 N 1.28711 * 110.64066 * 0.02562 * 26 25 24 28 28 H 0.97002 * 126.03484 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.47338 * 300.00414 * 1 2 3 30 30 H 1.09003 * 109.46771 * 60.00102 * 1 2 3 31 31 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47338 * 239.99586 * 2 1 3 33 33 H 1.09001 * 109.47418 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47081 * 299.99708 * 3 2 1 35 35 H 1.08996 * 109.47461 * 59.99971 * 3 2 1 36 36 H 1.08996 * 109.46703 * 295.00286 * 6 4 2 37 37 H 1.09001 * 109.46997 * 55.00147 * 6 4 2 38 38 H 0.97003 * 120.00834 * 359.97438 * 7 6 4 39 39 H 1.09006 * 109.47353 * 299.99689 * 10 8 7 40 40 H 1.08998 * 109.47480 * 59.99580 * 10 8 7 41 41 H 0.96999 * 120.00613 * 179.97438 * 15 14 12 42 42 H 0.97003 * 119.99438 * 265.00232 * 20 4 2 43 43 H 1.07997 * 126.81790 * 0.04197 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 2.1140 -2.8882 2.3807 8 6 1.8050 -4.1845 2.5828 9 8 1.0438 -4.7513 1.8277 10 6 2.4054 -4.9295 3.7470 11 16 1.8022 -6.6360 3.7470 12 6 2.6385 -7.2563 5.1684 13 1 3.2900 -6.6091 5.7369 14 6 2.4601 -8.5766 5.5575 15 7 1.6657 -9.3652 4.8650 16 14 3.3473 -9.2344 7.0640 17 1 2.9424 -8.4505 8.2585 18 1 2.9911 -10.6620 7.2642 19 1 4.8142 -9.1136 6.8666 20 7 3.5050 -0.7218 1.2490 21 6 4.1793 0.3358 1.7420 22 8 3.5717 1.2905 2.1874 23 6 5.6516 0.3355 1.7412 24 6 6.4802 1.3247 2.2016 25 7 7.7263 0.8951 2.0004 26 7 7.6947 -0.2696 1.4582 27 7 6.4795 -0.6543 1.2797 28 1 6.1991 -1.4960 0.8875 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7231 -2.4350 2.9845 39 1 3.4918 -4.9287 3.6577 40 1 2.1171 -4.4418 4.6782 41 1 1.5412 -10.2881 5.1367 42 1 3.9895 -1.4835 0.8940 43 1 6.1831 2.2656 2.6407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759504941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = -14.976308 kcal Electronic energy + Delta-G solvation = -26917.048019 eV Core-core repulsion = 22931.389861 eV Total energy + Delta-G solvation = -3985.658158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.45301 -41.43148 -40.42784 -38.13241 -35.35145 -35.12940 -34.59177 -34.08386 -32.44364 -31.49347 -29.16737 -27.86892 -27.64728 -25.63534 -24.35160 -23.67635 -22.26993 -21.85642 -21.18810 -20.37029 -19.78346 -18.07398 -17.79954 -17.69043 -17.48632 -17.11780 -16.88336 -16.53423 -16.32469 -15.83502 -15.72970 -15.29202 -15.05690 -14.73292 -14.56443 -14.29429 -14.09176 -13.59365 -13.44331 -13.33312 -13.17838 -13.01392 -12.88537 -12.71239 -12.65900 -12.46341 -12.37233 -11.88756 -11.82344 -11.76389 -11.64215 -11.34599 -11.13962 -11.00473 -10.67657 -10.28905 -10.26207 -10.16397 -8.66533 -8.35695 -6.13089 -0.22726 1.16632 1.25900 1.39070 1.42561 1.45845 1.55016 1.58996 1.76837 1.92361 2.22300 2.27661 2.98670 3.23956 3.30548 3.43862 3.60320 3.78536 3.88407 3.97352 4.00574 4.07601 4.22781 4.30478 4.30671 4.50556 4.62905 4.64636 4.81776 4.85191 4.91586 4.97185 5.05311 5.13139 5.21234 5.34319 5.40866 5.44955 5.50337 5.61228 6.17702 6.18459 6.41071 6.84699 7.06175 7.14005 7.19449 8.72988 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.002647 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.295813 B =10577.424739 C =12698.785152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.152 3.848 5 H 0.097 0.903 6 C 0.112 3.888 7 N -0.714 5.714 8 C 0.538 3.462 9 O -0.558 6.558 10 C -0.133 4.133 11 S -0.146 6.146 12 C -0.549 4.549 13 H 0.081 0.919 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 0.994 3.006 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.262 1.262 20 N -0.709 5.709 21 C 0.607 3.393 22 O -0.528 6.528 23 C -0.063 4.063 24 C 0.028 3.972 25 N -0.299 5.299 26 N -0.062 5.062 27 N -0.351 5.351 28 H 0.466 0.534 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.271 0.729 42 H 0.410 0.590 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 23.562 -9.913 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.192 4.192 4 C 0.048 3.952 5 H 0.115 0.885 6 C -0.011 4.011 7 N -0.368 5.368 8 C 0.323 3.677 9 O -0.436 6.436 10 C -0.284 4.284 11 S 0.082 5.918 12 C -0.696 4.696 13 H 0.099 0.901 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.816 3.184 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.187 1.187 20 N -0.362 5.362 21 C 0.390 3.610 22 O -0.402 6.402 23 C -0.199 4.199 24 C -0.132 4.132 25 N -0.163 5.163 26 N -0.044 5.044 27 N -0.082 5.082 28 H 0.317 0.683 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.248 0.752 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.247 0.753 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.688 22.908 -10.994 25.839 hybrid contribution 0.406 -0.505 1.612 1.738 sum 5.094 22.404 -9.382 24.817 Atomic orbital electron populations 1.21902 0.93713 1.02536 1.02784 1.21445 0.96786 0.96497 0.96976 1.21810 1.00324 0.95314 1.01713 1.21324 0.78446 0.94511 1.00928 0.88458 1.21810 0.99614 0.90000 0.89715 1.45707 1.49807 1.09877 1.31426 1.19939 0.80458 0.82290 0.84967 1.90715 1.36598 1.68498 1.47755 1.23392 1.04917 0.99890 1.00239 1.85529 1.63426 1.04017 1.38869 1.23172 1.32673 0.99806 1.13989 0.90060 1.26069 0.95952 0.96061 1.00853 1.70156 1.36695 1.07187 1.40590 0.85062 0.78686 0.77175 0.77457 1.18807 1.20434 1.18703 1.45844 1.07570 1.19969 1.62800 1.16569 0.83404 0.83097 0.77898 1.90909 1.67844 1.34693 1.46757 1.22293 0.93413 0.93251 1.10901 1.24298 0.87152 1.01461 1.00292 1.75031 1.22448 1.03935 1.14918 1.78232 1.02024 1.08986 1.15158 1.45622 1.04387 1.17726 1.40421 0.68325 0.92351 0.91455 0.92000 0.89572 0.93721 0.92439 0.92851 0.89706 0.90090 0.75152 0.87138 0.87659 0.91974 0.75329 0.76431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.84 71.98 0.64 -0.92 16 2 C -0.10 -0.96 2.69 -10.80 -0.03 -0.99 16 3 C -0.13 -1.65 7.71 71.98 0.56 -1.10 16 4 C 0.15 1.61 2.00 44.99 0.09 1.70 16 5 H 0.10 1.26 7.58 -2.38 -0.02 1.25 16 6 C 0.11 1.64 4.73 86.38 0.41 2.05 16 7 N -0.71 -13.36 5.39 -463.07 -2.49 -15.86 16 8 C 0.54 16.89 7.85 87.65 0.69 17.58 16 9 O -0.56 -22.75 15.86 -3.03 -0.05 -22.79 16 10 C -0.13 -4.77 6.16 71.23 0.44 -4.33 16 11 S -0.15 -7.67 20.57 -56.49 -1.16 -8.84 16 12 C -0.55 -30.34 9.50 67.95 0.65 -29.69 16 13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 14 C 0.02 0.87 5.49 84.86 0.47 1.34 16 15 N -0.91 -54.65 13.22 21.65 0.29 -54.36 16 16 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 20 N -0.71 -5.71 4.40 -445.98 -1.96 -7.67 16 21 C 0.61 7.39 6.16 86.61 0.53 7.92 16 22 O -0.53 -9.48 14.04 -4.07 -0.06 -9.54 16 23 C -0.06 -0.77 7.17 40.41 0.29 -0.48 16 24 C 0.03 0.42 11.87 84.18 1.00 1.42 16 25 N -0.30 -5.89 12.35 -57.50 -0.71 -6.60 16 26 N -0.06 -1.08 13.35 37.02 0.49 -0.59 16 27 N -0.35 -3.58 6.97 -48.52 -0.34 -3.92 16 28 H 0.47 1.27 8.32 -219.90 -1.83 -0.56 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.67 6.55 -2.39 -0.02 0.66 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.61 5.78 -2.39 -0.01 0.59 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.82 7.53 -2.39 -0.02 0.80 16 36 H 0.08 1.44 6.71 -2.39 -0.02 1.42 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 5.70 8.14 -92.71 -0.75 4.94 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.46 16 40 H 0.11 3.47 8.14 -2.40 -0.02 3.45 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.41 1.55 7.87 -92.71 -0.73 0.82 16 43 H 0.22 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -80.13 376.82 -0.47 -80.60 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -2.23 Total: 10.40 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.72 Total: -5.50 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.73 Total: -88.99 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.11 Total: -32.33 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.84 kcal Total: -80.13 -0.47 -80.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759504941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.622 kcal (2) G-P(sol) polarization free energy of solvation -80.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds