Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46762 * 2 1 4 4 C 1.52996 * 109.47205 * 120.00313 * 2 1 3 5 5 H 1.09000 * 109.47355 * 185.00252 * 4 2 1 6 6 C 1.53001 * 109.47372 * 64.99657 * 4 2 1 7 7 N 1.46493 * 109.47084 * 184.99895 * 6 4 2 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 S 1.81005 * 109.47244 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00090 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00308 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00171 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47362 * 89.99969 * 16 14 12 18 18 H 1.48505 * 109.46829 * 209.99955 * 16 14 12 19 19 H 1.48498 * 109.47111 * 329.99341 * 16 14 12 20 20 N 1.46505 * 109.47008 * 304.99783 * 4 2 1 21 21 C 1.34773 * 120.00181 * 275.00503 * 20 4 2 22 22 O 1.21621 * 120.00155 * 359.97438 * 21 20 4 23 23 C 1.47229 * 119.99881 * 180.02562 * 21 20 4 24 24 C 1.37010 * 127.18989 * 179.67777 * 23 21 20 25 25 N 1.33321 * 106.37383 * 179.90040 * 24 23 21 26 26 N 1.28510 * 109.43951 * 0.37252 * 25 24 23 27 27 N 1.28715 * 110.63971 * 359.76450 * 26 25 24 28 28 H 0.96999 * 126.04072 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47151 * 299.99934 * 1 2 3 30 30 H 1.09004 * 109.47360 * 59.99591 * 1 2 3 31 31 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46789 * 240.00070 * 2 1 3 33 33 H 1.08996 * 109.47412 * 60.00451 * 3 2 1 34 34 H 1.09007 * 109.46729 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47576 * 299.99761 * 3 2 1 36 36 H 1.09007 * 109.46593 * 65.00152 * 6 4 2 37 37 H 1.09006 * 109.47216 * 305.00611 * 6 4 2 38 38 H 0.97000 * 120.00740 * 359.72857 * 7 6 4 39 39 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 40 40 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 41 41 H 0.97000 * 119.99868 * 179.97438 * 15 14 12 42 42 H 0.97003 * 119.99576 * 94.99758 * 20 4 2 43 43 H 1.08005 * 126.81237 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.6352 -2.1955 1.1879 7 7 2.0184 -2.8594 2.4363 8 6 1.7596 -4.1708 2.6091 9 8 1.2051 -4.8000 1.7330 10 6 2.1593 -4.8552 3.8908 11 16 1.6790 -6.5988 3.8190 12 6 2.2494 -7.1386 5.3963 13 1 2.7293 -6.4395 6.0652 14 6 2.0821 -8.4622 5.7791 15 7 1.4968 -9.3141 4.9640 16 14 2.6862 -9.0343 7.4516 17 1 1.6026 -8.8671 8.4531 18 1 3.0730 -10.4660 7.3750 19 1 3.8635 -8.2246 7.8562 20 7 1.4559 -0.1037 2.4424 21 6 2.0348 0.9828 2.9909 22 8 3.0425 1.4502 2.4956 23 6 1.4481 1.6030 4.1903 24 6 1.9139 2.6988 4.8681 25 7 1.0706 2.9009 5.8807 26 7 0.1497 2.0049 5.8557 27 7 0.3252 1.2014 4.8655 28 1 -0.2381 0.4455 4.6373 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.1408 -2.6766 0.3505 37 1 0.5562 -2.2707 1.0526 38 1 2.4622 -2.3563 3.1369 39 1 3.2389 -4.7804 4.0213 40 1 1.6576 -4.3748 4.7309 41 1 1.3802 -10.2392 5.2314 42 1 0.6524 -0.4767 2.8375 43 1 2.7895 3.2840 4.6284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759504942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -13.193915 kcal Electronic energy + Delta-G solvation = -27044.478709 eV Core-core repulsion = 23058.897841 eV Total energy + Delta-G solvation = -3985.580868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.44838 -41.46344 -40.42039 -38.15257 -35.33933 -35.04924 -34.59153 -33.93349 -32.40194 -31.49779 -29.14664 -28.04244 -27.65458 -25.69874 -24.34504 -23.78660 -22.39484 -21.79249 -20.72940 -20.42615 -19.80906 -18.07718 -17.83020 -17.56904 -17.47573 -16.99443 -16.88305 -16.59763 -16.48524 -15.87596 -15.51325 -15.25833 -14.97202 -14.85175 -14.73666 -14.41992 -14.05224 -13.82816 -13.33282 -13.23006 -13.17337 -13.03152 -12.90280 -12.67488 -12.60510 -12.41705 -12.32123 -11.87318 -11.76558 -11.75368 -11.64251 -11.36290 -11.15293 -10.99547 -10.66621 -10.28307 -10.24107 -10.15403 -8.66407 -8.35930 -6.13094 -0.21995 1.17220 1.26185 1.39688 1.41168 1.46164 1.56024 1.59626 1.78603 1.93740 2.22906 2.27789 2.98595 3.24752 3.30735 3.45380 3.61728 3.81902 3.88899 3.96976 4.00621 4.08044 4.18061 4.28615 4.39639 4.50853 4.63926 4.65893 4.78022 4.87435 4.91801 5.00020 5.02759 5.14571 5.27471 5.34573 5.41186 5.45005 5.48152 5.61307 6.18647 6.18720 6.41971 6.85981 7.06188 7.14500 7.20222 8.72992 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.002614 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.919654 B =10710.506634 C =12527.027489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.135 4.135 4 C 0.153 3.847 5 H 0.099 0.901 6 C 0.112 3.888 7 N -0.713 5.713 8 C 0.538 3.462 9 O -0.558 6.558 10 C -0.133 4.133 11 S -0.146 6.146 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.015 3.985 15 N -0.910 5.910 16 Si 0.995 3.005 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.260 1.260 20 N -0.707 5.707 21 C 0.606 3.394 22 O -0.528 6.528 23 C -0.063 4.063 24 C 0.028 3.972 25 N -0.299 5.299 26 N -0.062 5.062 27 N -0.352 5.352 28 H 0.466 0.534 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.409 0.591 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.633 25.242 -6.602 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.192 4.192 4 C 0.049 3.951 5 H 0.117 0.883 6 C -0.012 4.012 7 N -0.368 5.368 8 C 0.323 3.677 9 O -0.436 6.436 10 C -0.284 4.284 11 S 0.081 5.919 12 C -0.695 4.695 13 H 0.099 0.901 14 C -0.190 4.190 15 N -0.546 5.546 16 Si 0.817 3.183 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.184 1.184 20 N -0.359 5.359 21 C 0.390 3.610 22 O -0.402 6.402 23 C -0.198 4.198 24 C -0.133 4.133 25 N -0.163 5.163 26 N -0.044 5.044 27 N -0.082 5.082 28 H 0.316 0.684 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.682 24.823 -7.248 25.914 hybrid contribution 0.953 -0.673 1.276 1.729 sum -0.729 24.150 -5.972 24.888 Atomic orbital electron populations 1.21893 0.94151 1.02305 1.02388 1.21468 0.96935 0.96686 0.96989 1.21805 1.00949 0.95220 1.01242 1.21293 0.99677 0.89413 0.84718 0.88295 1.21813 1.02049 0.90383 0.86977 1.45702 1.62365 1.08556 1.20147 1.19936 0.77831 0.82355 0.87541 1.90716 1.42747 1.65509 1.44631 1.23391 1.05679 1.00246 0.99112 1.85532 1.79120 1.02405 1.24823 1.23197 1.45219 0.98553 1.02533 0.90078 1.26071 0.94793 0.95672 1.02436 1.70167 1.41614 1.04821 1.38040 0.85005 0.78891 0.77523 0.76903 1.19318 1.20372 1.18360 1.45827 1.30742 1.29388 1.29972 1.16562 0.83336 0.80167 0.80913 1.90911 1.24735 1.62761 1.61788 1.22305 0.93999 1.02599 1.00907 1.24293 1.01222 0.96255 0.91480 1.75024 1.02366 1.18000 1.20948 1.78232 1.19690 0.99563 1.06930 1.45620 1.19814 1.24219 1.18520 0.68370 0.92456 0.92059 0.91966 0.88816 0.93473 0.92987 0.92590 0.89973 0.89822 0.75140 0.87680 0.87144 0.91989 0.75425 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.74 71.98 0.63 -0.64 16 2 C -0.10 -0.96 2.74 -10.80 -0.03 -0.99 16 3 C -0.13 -1.64 7.79 71.98 0.56 -1.08 16 4 C 0.15 1.55 2.11 44.99 0.09 1.65 16 5 H 0.10 1.21 7.58 -2.39 -0.02 1.19 16 6 C 0.11 1.59 5.10 86.38 0.44 2.03 16 7 N -0.71 -13.20 5.39 -463.05 -2.49 -15.69 16 8 C 0.54 16.82 7.85 87.65 0.69 17.51 16 9 O -0.56 -22.71 15.86 -3.04 -0.05 -22.76 16 10 C -0.13 -4.76 6.16 71.23 0.44 -4.32 16 11 S -0.15 -7.69 20.57 -56.49 -1.16 -8.85 16 12 C -0.55 -30.25 9.50 67.95 0.65 -29.60 16 13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 14 C 0.02 0.85 5.49 84.86 0.47 1.31 16 15 N -0.91 -54.62 13.22 21.65 0.29 -54.34 16 16 Si 0.99 42.67 29.55 68.60 2.03 44.69 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 N -0.71 -5.53 3.49 -445.99 -1.56 -7.09 16 21 C 0.61 7.25 6.37 86.61 0.55 7.80 16 22 O -0.53 -9.34 14.06 -4.10 -0.06 -9.40 16 23 C -0.06 -0.76 7.17 40.40 0.29 -0.47 16 24 C 0.03 0.41 11.87 84.18 1.00 1.41 16 25 N -0.30 -5.87 12.35 -57.49 -0.71 -6.58 16 26 N -0.06 -1.08 13.35 37.02 0.49 -0.59 16 27 N -0.35 -3.56 6.98 -48.52 -0.34 -3.89 16 28 H 0.47 1.28 8.32 -219.90 -1.83 -0.55 16 29 H 0.06 0.43 7.47 -2.39 -0.02 0.41 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.55 6.46 -2.39 -0.02 0.54 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.66 5.64 -2.39 -0.01 0.64 16 34 H 0.05 0.76 7.85 -2.38 -0.02 0.74 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.08 1.20 6.35 -2.38 -0.02 1.18 16 38 H 0.41 5.61 8.14 -92.71 -0.75 4.85 16 39 H 0.10 3.46 8.14 -2.40 -0.02 3.44 16 40 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.41 1.59 7.87 -92.71 -0.73 0.86 16 43 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.12 375.72 -0.01 -80.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -2.22 Total: 9.77 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.77 Total: -5.39 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -4.32 Total: -88.19 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.11 Total: -32.17 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.85 kcal Total: -80.12 -0.01 -80.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759504942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.938 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds