Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47624 * 2 1 4 4 N 1.46499 * 109.46866 * 120.00277 * 2 1 3 5 5 C 1.34779 * 119.99893 * 274.99840 * 4 2 1 6 6 O 1.21612 * 120.00005 * 359.97438 * 5 4 2 7 7 C 1.47389 * 120.00261 * 180.02562 * 5 4 2 8 8 N 1.31573 * 126.82042 * 359.68189 * 7 5 4 9 9 N 1.28385 * 111.96410 * 179.81386 * 8 7 5 10 10 H 0.97002 * 124.37589 * 180.20513 * 9 8 7 11 11 C 1.37053 * 111.25511 * 0.47208 * 9 8 7 12 12 C 1.39131 * 134.72214 * 179.74831 * 11 9 8 13 13 C 1.36678 * 119.78049 * 179.97438 * 12 11 9 14 14 C 1.38895 * 120.89585 * 0.02606 * 13 12 11 15 15 C 1.36726 * 120.52699 * 359.93567 * 14 13 12 16 16 C 1.39195 * 119.50526 * 0.07636 * 15 14 13 17 17 C 1.50702 * 109.47294 * 239.99823 * 2 1 3 18 18 O 1.21295 * 120.00149 * 271.32066 * 17 2 1 19 19 N 1.34777 * 120.00114 * 91.31627 * 17 2 1 20 20 C 1.37096 * 119.99812 * 176.56009 * 19 17 2 21 21 H 1.07997 * 120.00441 * 334.36223 * 20 19 17 22 22 C 1.38950 * 119.99662 * 154.09449 * 20 19 17 23 23 N 1.31411 * 119.99936 * 344.88577 * 22 20 19 24 24 Si 1.86803 * 120.00119 * 164.88803 * 22 20 19 25 25 H 1.48501 * 109.47105 * 89.99648 * 24 22 20 26 26 H 1.48499 * 109.47117 * 209.99729 * 24 22 20 27 27 H 1.48501 * 109.46873 * 329.99907 * 24 22 20 28 28 C 1.46499 * 119.99673 * 356.56034 * 19 17 2 29 29 C 1.47200 * 109.47022 * 276.55914 * 28 19 17 30 30 N 4.03052 * 59.33143 * 300.96785 * 2 1 3 31 31 H 1.08994 * 109.47002 * 301.06325 * 1 2 3 32 32 H 1.09005 * 109.46688 * 61.05978 * 1 2 3 33 33 H 1.08993 * 109.47432 * 181.05449 * 1 2 3 34 34 H 0.97000 * 120.00934 * 94.99861 * 4 2 1 35 35 H 1.08000 * 120.10651 * 359.97438 * 12 11 9 36 36 H 1.08000 * 119.55031 * 179.97438 * 13 12 11 37 37 H 1.08003 * 119.73976 * 179.97438 * 14 13 12 38 38 H 1.07994 * 120.24393 * 180.02562 * 15 14 13 39 39 H 0.97000 * 120.00087 * 180.02562 * 23 22 20 40 40 H 1.08996 * 109.47252 * 36.56205 * 28 19 17 41 41 H 1.09004 * 109.46958 * 156.56428 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1617 2.4117 7 6 2.6387 -0.7130 3.5605 8 7 2.9831 -1.9794 3.6545 9 7 3.3754 -2.2837 4.8385 10 1 3.6727 -3.1672 5.1068 11 6 3.3142 -1.2005 5.6759 12 6 3.6077 -0.9831 7.0184 13 6 3.4291 0.2591 7.5599 14 6 2.9566 1.3125 6.7877 15 6 2.6612 1.1266 5.4657 16 6 2.8356 -0.1307 4.8945 17 6 2.0324 -0.7104 -1.2304 18 8 2.2117 -1.9098 -1.2075 19 7 2.2823 -0.0131 -2.3564 20 6 2.8059 -0.6473 -3.4534 21 1 3.3915 -1.5462 -3.3292 22 6 2.5784 -0.1365 -4.7254 23 7 1.6367 0.7603 -4.9146 24 14 3.6113 -0.7246 -6.1665 25 1 2.9605 -1.9030 -6.7936 26 1 3.7309 0.3659 -7.1674 27 1 4.9634 -1.1043 -5.6841 28 6 1.9945 1.4224 -2.4080 29 6 0.5719 1.6264 -2.7267 30 7 -0.5259 1.7839 -2.9726 31 1 -0.3633 0.5302 0.8802 32 1 -0.3633 0.4973 -0.8994 33 1 -0.3634 -1.0274 0.0189 34 1 2.2490 -1.6318 1.1527 35 1 3.9755 -1.7933 7.6306 36 1 3.6577 0.4236 8.6025 37 1 2.8220 2.2863 7.2348 38 1 2.2944 1.9489 4.8694 39 1 1.4776 1.1166 -5.8027 40 1 2.2185 1.8728 -1.4411 41 1 2.6097 1.8888 -3.1775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340669772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = 63.830564 kcal Electronic energy + Delta-G solvation = -28667.279576 eV Core-core repulsion = 24549.594789 eV Total energy + Delta-G solvation = -4117.684787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.64816 -39.80483 -38.52119 -37.96678 -35.91296 -34.77318 -34.12717 -32.80441 -31.98069 -30.66612 -30.42672 -29.51483 -27.50493 -25.47332 -24.66969 -23.53540 -22.76713 -22.39783 -20.08139 -19.40454 -18.44040 -17.94971 -17.78727 -16.90506 -16.39064 -16.02503 -15.94687 -15.56554 -15.48420 -14.76933 -14.59436 -14.36178 -14.23018 -13.99524 -13.61512 -13.53226 -13.18645 -12.86445 -12.44447 -12.30627 -12.24928 -11.96519 -11.79316 -11.63209 -11.45751 -11.31915 -11.14816 -11.13137 -11.10814 -10.55229 -10.46214 -10.36167 -10.33385 -10.01933 -9.31161 -9.03675 -9.01774 -8.58943 -8.31041 -8.07061 -6.53989 -4.13405 0.62412 1.12787 1.77096 2.46588 3.03122 3.12492 3.19535 3.25025 3.26813 3.47871 3.62067 3.79959 3.98951 4.09150 4.19864 4.27428 4.59114 4.66582 4.73542 4.86750 4.95171 5.13044 5.15897 5.28012 5.39829 5.44591 5.50017 5.66429 5.72975 5.94595 5.97386 6.11885 6.16550 6.21224 6.28360 6.43217 6.53004 6.54424 6.62915 6.77334 7.40335 7.49711 7.79274 7.84587 8.19268 8.32564 8.75377 8.90020 9.09171 9.60819 10.51560 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002598 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.888749 B =10776.440045 C =11487.216670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 H 0.104 0.896 4 N -0.691 5.691 5 C 0.605 3.395 6 O -0.533 6.533 7 C 0.011 3.989 8 N -0.201 5.201 9 N -0.415 5.415 10 H 0.447 0.553 11 C 0.063 3.937 12 C -0.122 4.122 13 C -0.084 4.084 14 C -0.143 4.143 15 C -0.040 4.040 16 C -0.108 4.108 17 C 0.453 3.547 18 O -0.567 6.567 19 N -0.433 5.433 20 C -0.313 4.313 21 H 0.106 0.894 22 C 0.035 3.965 23 N -0.876 5.876 24 Si 0.932 3.068 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.267 1.267 28 C 0.216 3.784 29 C 0.247 3.753 30 N -0.467 5.467 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.275 0.725 40 H 0.088 0.912 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 0.101 21.744 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.018 3.982 3 H 0.121 0.879 4 N -0.344 5.344 5 C 0.389 3.611 6 O -0.408 6.408 7 C -0.161 4.161 8 N -0.031 5.031 9 N -0.135 5.135 10 H 0.292 0.708 11 C -0.050 4.050 12 C -0.143 4.143 13 C -0.105 4.105 14 C -0.162 4.162 15 C -0.060 4.060 16 C -0.116 4.116 17 C 0.240 3.760 18 O -0.449 6.449 19 N -0.153 5.153 20 C -0.440 4.440 21 H 0.124 0.876 22 C -0.170 4.170 23 N -0.514 5.514 24 Si 0.758 3.242 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.192 1.192 28 C 0.089 3.911 29 C -0.071 4.071 30 N -0.147 5.147 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.040 -0.286 20.551 20.946 hybrid contribution 1.003 -0.669 -0.293 1.241 sum 5.043 -0.955 20.258 20.898 Atomic orbital electron populations 1.22093 0.93223 1.03042 1.03173 1.20952 0.95620 0.97613 0.84013 0.87852 1.45691 1.65407 1.15170 1.08147 1.16602 0.77723 0.85706 0.81097 1.90785 1.50961 1.14625 1.84424 1.22796 1.08664 0.89863 0.94739 1.72990 1.10098 1.16651 1.03315 1.43055 1.53823 1.11763 1.04834 0.70790 1.19230 1.03556 0.88254 0.93993 1.19762 1.05122 0.98599 0.90840 1.20739 0.97779 0.91995 0.99980 1.20858 1.01965 0.99559 0.93856 1.20456 0.95706 0.95223 0.94650 1.19424 1.05434 0.94945 0.91750 1.20066 0.83001 0.87588 0.85307 1.90549 1.56055 1.14091 1.84220 1.43527 1.54608 1.05375 1.11794 1.19679 1.29450 1.11908 0.82980 0.87626 1.25403 0.95806 0.96827 0.98926 1.69723 1.27869 1.29661 1.24147 0.85836 0.80031 0.78337 0.79984 1.20315 1.20711 1.19193 1.18768 0.85410 0.84958 1.01995 1.29069 0.94764 0.92594 0.90642 1.80895 1.13762 1.08648 1.11404 0.91520 0.90802 0.91858 0.74750 0.85486 0.85199 0.85233 0.84153 0.91420 0.89434 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.43 37.16 0.35 -2.47 16 2 C 0.13 2.33 2.33 -69.08 -0.16 2.17 16 3 H 0.10 1.81 5.37 -51.93 -0.28 1.53 16 4 N -0.69 -11.84 5.06 -56.02 -0.28 -12.13 16 5 C 0.61 10.02 7.78 -12.53 -0.10 9.92 16 6 O -0.53 -9.59 16.06 5.27 0.08 -9.51 16 7 C 0.01 0.16 7.32 -80.76 -0.59 -0.43 16 8 N -0.20 -2.65 11.80 34.46 0.41 -2.24 16 9 N -0.42 -4.09 6.85 32.34 0.22 -3.87 16 10 H 0.45 2.63 8.96 -190.49 -1.71 0.92 16 11 C 0.06 0.66 7.38 -84.21 -0.62 0.03 16 12 C -0.12 -0.94 10.03 -39.81 -0.40 -1.34 16 13 C -0.08 -0.61 9.96 -39.90 -0.40 -1.01 16 14 C -0.14 -1.21 9.98 -39.89 -0.40 -1.61 16 15 C -0.04 -0.46 9.87 -39.77 -0.39 -0.85 16 16 C -0.11 -1.40 6.34 -105.05 -0.67 -2.07 16 17 C 0.45 10.09 6.71 -10.98 -0.07 10.02 16 18 O -0.57 -14.24 15.88 5.54 0.09 -14.15 16 19 N -0.43 -9.92 2.59 -117.93 -0.31 -10.23 16 20 C -0.31 -7.85 9.17 -14.93 -0.14 -7.99 16 21 H 0.11 2.76 7.52 -52.49 -0.39 2.37 16 22 C 0.03 0.84 4.97 -17.47 -0.09 0.76 16 23 N -0.88 -21.81 9.45 55.50 0.52 -21.28 16 24 Si 0.93 19.36 29.58 -169.99 -5.03 14.33 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 C 0.22 4.26 4.92 -6.83 -0.03 4.23 16 29 C 0.25 5.40 11.16 -20.76 -0.23 5.17 16 30 N -0.47 -10.91 18.07 42.15 0.76 -10.15 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.44 5.32 -51.93 -0.28 1.16 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 7.16 7.60 -40.82 -0.31 6.85 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 38 H 0.14 1.63 7.65 -52.49 -0.40 1.23 16 39 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.09 1.39 6.00 -51.93 -0.31 1.07 16 41 H 0.13 2.47 6.83 -51.93 -0.35 2.12 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -32.22 358.03 -7.35 -39.58 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.28 Total: 9.72 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: -3.94 Total: 14.53 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 1.33 Total: -59.90 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.17 Total: -23.65 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.22 -7.35 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340669772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.409 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds