Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39939 * 125.89631 * 2 1 4 4 C 1.30636 * 109.22980 * 179.75834 * 3 2 1 5 5 C 1.40697 * 108.50395 * 0.41806 * 4 3 2 6 6 C 1.47489 * 126.43421 * 179.84804 * 5 4 3 7 7 O 1.21599 * 119.99808 * 179.68329 * 6 5 4 8 8 N 1.34775 * 120.00321 * 359.68877 * 6 5 4 9 9 C 1.39482 * 120.00578 * 179.97438 * 8 6 5 10 10 N 1.32294 * 119.72626 * 0.27330 * 9 8 6 11 11 C 1.31958 * 121.68702 * 180.26110 * 10 9 8 12 12 C 1.38082 * 120.95576 * 359.72774 * 11 10 9 13 13 C 1.38784 * 119.36023 * 0.02562 * 12 11 10 14 14 C 1.38787 * 118.45017 * 359.97438 * 13 12 11 15 15 O 1.35973 * 120.50046 * 179.97438 * 14 13 12 16 16 C 1.42906 * 116.99587 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.46748 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47574 * 89.99780 * 22 20 18 24 24 H 1.48500 * 109.47346 * 209.99892 * 22 20 18 25 25 H 1.48499 * 109.47067 * 329.99541 * 22 20 18 26 26 C 1.35923 * 125.90432 * 180.02562 * 2 1 3 27 27 C 1.43206 * 126.53238 * 359.94246 * 26 2 1 28 28 N 3.54938 * 90.35809 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47082 * 269.96588 * 1 2 3 30 30 H 1.08998 * 109.47605 * 29.96831 * 1 2 3 31 31 H 1.09003 * 109.46778 * 149.97630 * 1 2 3 32 32 H 1.08001 * 125.74748 * 180.26522 * 4 3 2 33 33 H 0.97009 * 119.99553 * 359.97438 * 8 6 5 34 34 H 1.08000 * 119.51820 * 179.74726 * 11 10 9 35 35 H 1.07997 * 120.31640 * 179.97438 * 12 11 10 36 36 H 1.08002 * 120.77501 * 180.02562 * 13 12 11 37 37 H 1.09000 * 109.47490 * 59.99648 * 16 15 14 38 38 H 1.09001 * 109.47232 * 299.99002 * 16 15 14 39 39 H 1.08993 * 109.46955 * 299.99993 * 17 16 15 40 40 H 1.09000 * 109.47050 * 59.99822 * 17 16 15 41 41 H 0.96992 * 120.00032 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2855 1.1336 0.0000 4 6 3.5369 0.7590 0.0052 5 6 3.5821 -0.6473 -0.0009 6 6 4.7962 -1.4847 -0.0011 7 8 4.6987 -2.6968 -0.0010 8 7 6.0136 -0.9066 -0.0014 9 6 7.1619 -1.6985 -0.0011 10 7 7.0496 -3.0166 -0.0060 11 6 8.1096 -3.8026 -0.0008 12 6 9.3854 -3.2744 0.0044 13 6 9.5514 -1.8965 0.0047 14 6 8.4191 -1.0941 -0.0009 15 8 8.5333 0.2608 -0.0003 16 6 9.8567 0.8002 0.0056 17 6 9.7844 2.3286 0.0047 18 6 11.1799 2.8974 0.0116 19 1 12.0330 2.2351 0.0166 20 6 11.3676 4.2633 0.0126 21 7 10.3287 5.0699 0.0071 22 14 13.0973 4.9685 0.0205 23 1 13.5621 5.1555 -1.3775 24 1 13.0949 6.2780 0.7206 25 1 14.0102 4.0325 0.7246 26 6 2.2621 -1.1010 -0.0005 27 6 1.8299 -2.4663 0.0001 28 7 1.4872 -3.5493 0.0016 29 1 -0.3633 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8898 -0.5142 32 1 4.3928 1.4177 0.0106 33 1 6.0913 0.0604 -0.0019 34 1 7.9773 -4.8744 -0.0009 35 1 10.2457 -3.9272 0.0091 36 1 10.5388 -1.4589 0.0083 37 1 10.3911 0.4616 -0.8819 38 1 10.3830 0.4616 0.8981 39 1 9.2581 2.6668 -0.8878 40 1 9.2498 2.6675 0.8921 41 1 10.4608 6.0308 0.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355555904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = 89.398499 kcal Electronic energy + Delta-G solvation = -27770.200915 eV Core-core repulsion = 23653.624837 eV Total energy + Delta-G solvation = -4116.576078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93142 -40.77501 -38.99444 -37.74997 -36.93085 -34.88235 -33.95635 -33.47547 -31.71760 -31.25482 -30.57021 -29.23339 -27.63273 -25.44795 -24.65458 -23.34767 -22.78847 -22.40249 -21.10334 -20.36542 -19.27682 -18.14040 -17.45926 -17.33550 -16.41865 -16.17436 -16.01440 -15.76857 -15.42377 -15.00153 -14.89903 -14.70285 -14.55341 -14.20746 -13.92295 -13.90992 -13.61684 -13.49228 -13.26031 -13.02050 -12.98632 -12.81414 -12.40841 -12.03216 -11.93241 -11.54933 -11.07200 -10.99580 -10.76242 -10.68538 -10.34219 -10.05230 -10.03950 -9.78336 -9.41889 -9.30436 -9.18270 -9.08593 -8.52274 -7.67361 -6.18238 -4.22977 0.29946 1.20693 1.43444 1.44724 1.78708 2.27782 2.74497 2.83218 3.22632 3.23072 3.28489 3.28953 3.30945 3.51686 3.84412 4.02930 4.33756 4.38323 4.50959 4.59519 4.66136 4.81934 4.90124 4.94991 4.99079 5.16448 5.18864 5.34261 5.46465 5.79168 5.86073 5.89942 6.00410 6.05213 6.18319 6.32810 6.53557 6.61234 6.89582 6.94481 7.21599 7.33848 7.52557 7.63045 7.84452 8.02803 8.14231 8.31360 8.82180 9.42055 10.93146 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.002664 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.930477 B =10509.580409 C =12978.748181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.338 5.338 3 N -0.255 5.255 4 C 0.086 3.914 5 C -0.220 4.220 6 C 0.580 3.420 7 O -0.477 6.477 8 N -0.642 5.642 9 C 0.330 3.670 10 N -0.443 5.443 11 C 0.075 3.925 12 C -0.158 4.158 13 C -0.148 4.148 14 C 0.070 3.930 15 O -0.315 6.315 16 C 0.066 3.934 17 C 0.027 3.973 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.209 3.791 27 C 0.271 3.729 28 N -0.354 5.354 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.208 0.792 33 H 0.424 0.576 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 -10.896 -0.040 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.120 5.120 3 N -0.076 5.076 4 C -0.099 4.099 5 C -0.239 4.239 6 C 0.365 3.635 7 O -0.347 6.347 8 N -0.290 5.290 9 C 0.097 3.903 10 N -0.158 5.158 11 C -0.081 4.081 12 C -0.180 4.180 13 C -0.174 4.174 14 C 0.018 3.982 15 O -0.228 6.228 16 C -0.008 4.008 17 C -0.010 4.010 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.526 5.526 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C 0.075 3.925 27 C -0.048 4.048 28 N -0.031 5.031 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.225 0.775 33 H 0.263 0.737 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.843 -12.381 -0.044 21.718 hybrid contribution 2.819 1.109 0.007 3.029 sum -15.024 -11.272 -0.037 18.783 Atomic orbital electron populations 1.22194 0.72360 1.05650 1.04754 1.48890 1.07408 1.02021 1.53678 1.77417 1.01930 1.05489 1.22717 1.24204 0.95755 0.93211 0.96739 1.20204 0.91477 0.93907 1.18302 1.17219 0.81722 0.87233 0.77285 1.90918 1.85790 1.12902 1.45121 1.43069 1.03151 1.10611 1.72136 1.17689 0.83312 0.88130 1.01128 1.67624 1.33341 1.01466 1.13358 1.22404 0.87155 0.99507 0.99048 1.21901 0.98865 0.94886 1.02314 1.21609 0.98498 0.94096 1.03231 1.19561 0.92817 0.85346 1.00451 1.86091 1.34175 1.14966 1.87561 1.23406 0.79002 0.98533 0.99868 1.19126 0.98140 0.84843 0.98928 1.20944 0.91483 0.91731 1.52493 0.92371 1.24968 0.97256 0.97026 0.94807 1.69957 1.29546 1.03605 1.49523 0.86498 0.84139 0.78564 0.78264 1.20475 1.21026 1.19767 1.16121 0.90037 0.82541 1.03791 1.23784 0.94502 0.91029 0.95451 1.81271 1.06458 1.09519 1.05892 0.89268 0.87586 0.89040 0.77530 0.73734 0.82639 0.84784 0.83686 0.92928 0.92919 0.95287 0.95282 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 11.26 59.85 0.67 1.05 16 2 N -0.34 -2.86 4.03 -64.97 -0.26 -3.13 16 3 N -0.25 -2.47 12.49 30.77 0.38 -2.09 16 4 C 0.09 0.80 11.46 -17.13 -0.20 0.61 16 5 C -0.22 -2.49 6.16 -104.70 -0.64 -3.14 16 6 C 0.58 8.25 7.78 -12.49 -0.10 8.15 16 7 O -0.48 -8.37 14.04 5.28 0.07 -8.30 16 8 N -0.64 -8.91 5.38 -12.25 -0.07 -8.97 16 9 C 0.33 5.26 7.44 -154.51 -1.15 4.11 16 10 N -0.44 -7.27 7.87 -12.24 -0.10 -7.36 16 11 C 0.08 1.01 11.17 -17.55 -0.20 0.81 16 12 C -0.16 -1.91 10.10 -39.44 -0.40 -2.31 16 13 C -0.15 -2.06 9.14 -39.18 -0.36 -2.42 16 14 C 0.07 1.11 6.72 -38.91 -0.26 0.84 16 15 O -0.32 -5.46 9.38 -19.66 -0.18 -5.65 16 16 C 0.07 1.24 4.70 37.16 0.17 1.42 16 17 C 0.03 0.63 5.34 -27.88 -0.15 0.49 16 18 C -0.53 -13.78 9.11 -34.44 -0.31 -14.09 16 19 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 22 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.21 2.20 6.83 -83.63 -0.57 1.63 16 27 C 0.27 3.19 13.94 -22.47 -0.31 2.88 16 28 N -0.35 -4.73 18.54 41.84 0.78 -3.96 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.27 7.79 -51.93 -0.40 -0.13 16 32 H 0.21 1.37 7.48 -52.49 -0.39 0.98 16 33 H 0.42 4.95 6.98 -40.82 -0.29 4.66 16 34 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.15 1.87 6.44 -52.49 -0.34 1.53 16 37 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 38 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -34.33 371.34 -6.26 -40.59 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.30 Total: 0.63 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -3.90 Total: 1.58 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 1.47 Total: -49.79 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.33 -6.26 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355555904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.986 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds