Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47063 * 2 1 4 4 C 1.50705 * 109.46803 * 119.99302 * 2 1 3 5 5 C 1.38212 * 119.99793 * 16.14944 * 4 2 1 6 6 C 1.38433 * 119.99494 * 180.27695 * 5 4 2 7 7 F 1.35101 * 119.99387 * 179.74481 * 6 5 4 8 8 C 1.38471 * 119.99969 * 359.52878 * 6 5 4 9 9 C 1.38158 * 120.00153 * 0.42517 * 8 6 5 10 10 C 1.38428 * 119.99916 * 196.16378 * 4 2 1 11 11 F 1.35096 * 119.99967 * 359.96158 * 10 4 2 12 12 N 1.46499 * 109.47322 * 239.99119 * 2 1 3 13 13 C 1.46495 * 120.00012 * 304.65839 * 12 2 1 14 14 C 1.34782 * 119.99733 * 124.64864 * 12 2 1 15 15 O 1.21585 * 120.00014 * 0.02562 * 14 12 2 16 16 N 1.34772 * 119.99797 * 179.97438 * 14 12 2 17 17 C 1.46497 * 119.99888 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47105 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99985 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99868 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99752 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00111 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99433 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00605 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99385 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47316 * 120.00295 * 25 23 21 28 28 H 1.48499 * 109.46811 * 239.99987 * 25 23 21 29 29 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47074 * 300.00823 * 1 2 3 31 31 H 1.09003 * 109.46822 * 60.00304 * 1 2 3 32 32 H 1.08001 * 120.00120 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.99865 * 180.23550 * 8 6 5 34 34 H 1.07998 * 120.00319 * 179.81270 * 9 8 6 35 35 H 1.08993 * 109.47584 * 95.18942 * 13 12 2 36 36 H 1.09005 * 109.47106 * 215.18736 * 13 12 2 37 37 H 1.09000 * 109.47147 * 335.18409 * 13 12 2 38 38 H 0.97006 * 120.00184 * 0.02562 * 16 14 12 39 39 H 1.08991 * 109.47587 * 300.00626 * 17 16 14 40 40 H 1.09003 * 109.47104 * 60.00722 * 17 16 14 41 41 H 0.97000 * 120.00341 * 359.97438 * 20 18 17 42 42 H 0.97002 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.1786 -1.5159 1.9603 6 6 1.6385 -2.1637 3.0939 7 9 0.8026 -2.9471 3.8101 8 6 2.9564 -2.0124 3.4912 9 6 3.8099 -1.2079 2.7612 10 6 3.3486 -0.5556 1.6302 11 9 4.1832 0.2314 0.9167 12 7 2.0184 -0.6908 -1.1960 13 6 1.5824 -2.0601 -1.4804 14 6 2.8688 -0.0663 -2.0349 15 8 3.2308 1.0701 -1.7987 16 7 3.3185 -0.7020 -3.1349 17 6 4.2431 -0.0235 -4.0463 18 6 4.5894 -0.9443 -5.1880 19 8 4.1112 -2.0580 -5.2353 20 7 5.4312 -0.5307 -6.1558 21 6 5.7458 -1.3683 -7.1947 22 1 5.3194 -2.3596 -7.2372 23 6 6.6133 -0.9416 -8.1927 24 7 7.1326 0.2643 -8.1407 25 14 7.0414 -2.0825 -9.6086 26 1 6.3312 -3.3751 -9.4348 27 1 6.6269 -1.4579 -10.8904 28 1 8.5069 -2.3219 -9.6256 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.1515 -1.6360 1.6489 33 1 3.3162 -2.5209 4.3735 34 1 4.8370 -1.0875 3.0728 35 1 0.7324 -2.0366 -2.1622 36 1 2.4012 -2.6142 -1.9395 37 1 1.2894 -2.5485 -0.5510 38 1 3.0299 -1.6088 -3.3231 39 1 3.7719 0.8781 -4.4374 40 1 5.1519 0.2458 -3.5080 41 1 5.8140 0.3598 -6.1178 42 1 7.7379 0.5623 -8.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358282365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -120.355480 kcal Electronic energy + Delta-G solvation = -29405.288786 eV Core-core repulsion = 24828.927906 eV Total energy + Delta-G solvation = -4576.360880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.27967 -49.01974 -40.45057 -39.22858 -38.20165 -36.20677 -34.49564 -33.80026 -32.62655 -31.35756 -30.46479 -29.59263 -27.55354 -27.01189 -24.87752 -24.21552 -22.84215 -21.63777 -19.67204 -19.59433 -18.42579 -18.09179 -17.84746 -17.50428 -17.29042 -16.48690 -16.04305 -15.79110 -15.53980 -15.46569 -14.82744 -14.69325 -14.61920 -14.57906 -14.36450 -14.11645 -13.77736 -13.54009 -13.43003 -13.19584 -12.96226 -12.60508 -12.45900 -12.28076 -12.22013 -12.05700 -11.90664 -11.62901 -11.40171 -11.35453 -11.13906 -10.40696 -10.32156 -10.01297 -9.64106 -9.56902 -8.96691 -8.84783 -8.61674 -8.53719 -8.09307 -6.50783 -3.92723 0.53709 0.61081 2.59417 3.08757 3.10544 3.22734 3.29405 3.34804 3.75056 3.77354 3.88047 4.01199 4.11472 4.17150 4.27449 4.51943 4.73858 4.83806 4.90073 4.95236 4.97600 5.18060 5.22158 5.33417 5.40498 5.49222 5.57998 5.59460 5.61786 5.70884 5.71147 5.88035 5.95184 6.02604 6.09400 6.38787 6.42390 6.76934 6.98565 7.46785 7.93430 8.14425 8.46000 8.77356 9.05444 9.40502 9.88291 10.66217 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002188 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.504267 B =12795.266076 C =12827.306604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.196 3.804 3 H 0.119 0.881 4 C -0.107 4.107 5 C -0.118 4.118 6 C 0.083 3.917 7 F -0.137 7.137 8 C -0.122 4.122 9 C -0.129 4.129 10 C 0.113 3.887 11 F -0.118 7.118 12 N -0.627 5.627 13 C 0.076 3.924 14 C 0.708 3.292 15 O -0.588 6.588 16 N -0.722 5.722 17 C 0.127 3.873 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.549 5.549 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.894 5.894 25 Si 0.932 3.068 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -2.067 22.417 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.092 3.908 3 H 0.137 0.863 4 C -0.110 4.110 5 C -0.137 4.137 6 C 0.064 3.936 7 F -0.115 7.115 8 C -0.141 4.141 9 C -0.148 4.148 10 C 0.093 3.907 11 F -0.096 7.096 12 N -0.365 5.365 13 C -0.067 4.067 14 C 0.409 3.591 15 O -0.466 6.466 16 N -0.381 5.381 17 C -0.001 4.001 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.433 4.433 22 H 0.124 0.876 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.628 -1.875 22.339 25.254 hybrid contribution 0.475 -0.528 -0.759 1.040 sum -11.153 -2.403 21.580 24.410 Atomic orbital electron populations 1.22229 0.93787 1.02700 1.03311 1.19623 0.94179 0.97290 0.79745 0.86326 1.20187 0.92455 0.99807 0.98502 1.21062 1.01493 0.97011 0.94158 1.17625 0.88504 0.94828 0.92648 1.91521 1.70856 1.72174 1.76960 1.21012 0.91764 0.99983 1.01359 1.21056 1.01428 0.97791 0.94505 1.17659 0.88046 0.93304 0.91710 1.91639 1.70198 1.71043 1.76701 1.46974 1.49562 1.15604 1.24310 1.21721 1.00675 0.82559 1.01767 1.15766 0.79021 0.84365 0.79978 1.90899 1.62425 1.17351 1.75913 1.44902 1.49863 1.19458 1.23840 1.20797 0.93686 0.95216 0.90404 1.19762 0.84735 0.88685 0.85308 1.90485 1.57445 1.21800 1.78792 1.41796 1.39472 1.16699 1.20464 1.19773 1.25320 0.98550 0.99691 0.87650 1.25326 0.96460 0.96732 0.99250 1.69620 1.31290 1.17390 1.35159 0.85762 0.78258 0.79959 0.80129 1.19152 1.20618 1.20626 0.91759 0.90896 0.91087 0.83250 0.83770 0.83575 0.92233 0.91033 0.90968 0.75398 0.89982 0.90001 0.77006 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 7.97 37.16 0.30 -0.93 16 2 C 0.20 2.11 2.54 -69.08 -0.18 1.93 16 3 H 0.12 1.54 6.82 -51.93 -0.35 1.19 16 4 C -0.11 -1.05 4.72 -104.56 -0.49 -1.54 16 5 C -0.12 -0.93 8.47 -39.52 -0.33 -1.27 16 6 C 0.08 0.68 7.30 -39.42 -0.29 0.39 16 7 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 8 C -0.12 -0.91 10.02 -39.53 -0.40 -1.30 16 9 C -0.13 -1.10 10.02 -39.52 -0.40 -1.50 16 10 C 0.11 1.25 7.24 -39.42 -0.29 0.96 16 11 F -0.12 -1.68 16.73 2.25 0.04 -1.64 16 12 N -0.63 -7.94 2.75 -181.01 -0.50 -8.43 16 13 C 0.08 0.76 8.97 59.84 0.54 1.30 16 14 C 0.71 11.81 8.28 -86.92 -0.72 11.09 16 15 O -0.59 -11.49 15.68 5.29 0.08 -11.41 16 16 N -0.72 -12.56 5.39 -66.42 -0.36 -12.92 16 17 C 0.13 2.42 6.15 -5.19 -0.03 2.39 16 18 C 0.43 9.93 7.85 -10.99 -0.09 9.84 16 19 O -0.60 -15.33 15.24 5.54 0.08 -15.25 16 20 N -0.55 -13.71 5.29 -10.96 -0.06 -13.76 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 22 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 24 N -0.89 -23.97 13.05 55.50 0.72 -23.24 16 25 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.40 6.11 -51.93 -0.32 0.08 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.15 0.89 5.96 -52.49 -0.31 0.58 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.78 6.65 -51.93 -0.35 0.44 16 37 H 0.07 0.58 6.81 -51.93 -0.35 0.22 16 38 H 0.41 6.91 5.28 -40.82 -0.22 6.70 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -32.41 364.81 -6.78 -39.18 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.69 Total: 14.07 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: -2.62 Total: 13.52 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.19 Total: -58.36 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: 0.17 Total: -26.65 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.41 -6.78 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.171 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds