Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47063 * 2 1 4 4 C 1.50705 * 109.46803 * 119.99302 * 2 1 3 5 5 C 1.38212 * 119.99793 * 16.14944 * 4 2 1 6 6 C 1.38433 * 119.99494 * 180.27695 * 5 4 2 7 7 F 1.35101 * 119.99387 * 179.74481 * 6 5 4 8 8 C 1.38471 * 119.99969 * 359.52878 * 6 5 4 9 9 C 1.38158 * 120.00153 * 0.42517 * 8 6 5 10 10 C 1.38428 * 119.99916 * 196.16378 * 4 2 1 11 11 F 1.35096 * 119.99967 * 359.96158 * 10 4 2 12 12 N 1.46499 * 109.47322 * 239.99119 * 2 1 3 13 13 C 1.46495 * 120.00012 * 304.65839 * 12 2 1 14 14 C 1.34782 * 119.99733 * 124.64864 * 12 2 1 15 15 O 1.21585 * 120.00014 * 0.02562 * 14 12 2 16 16 N 1.34772 * 119.99797 * 179.97438 * 14 12 2 17 17 C 1.46497 * 119.99888 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47105 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99985 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99868 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99752 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00111 * 359.97438 * 21 20 18 23 23 C 1.38956 * 119.99433 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00605 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99385 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47316 * 120.00295 * 25 23 21 28 28 H 1.48499 * 109.46811 * 239.99987 * 25 23 21 29 29 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47074 * 300.00823 * 1 2 3 31 31 H 1.09003 * 109.46822 * 60.00304 * 1 2 3 32 32 H 1.08001 * 120.00120 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.99865 * 180.23550 * 8 6 5 34 34 H 1.07998 * 120.00319 * 179.81270 * 9 8 6 35 35 H 1.08993 * 109.47584 * 95.18942 * 13 12 2 36 36 H 1.09005 * 109.47106 * 215.18736 * 13 12 2 37 37 H 1.09000 * 109.47147 * 335.18409 * 13 12 2 38 38 H 0.97006 * 120.00184 * 0.02562 * 16 14 12 39 39 H 1.08991 * 109.47587 * 300.00626 * 17 16 14 40 40 H 1.09003 * 109.47104 * 60.00722 * 17 16 14 41 41 H 0.97000 * 120.00341 * 359.97438 * 20 18 17 42 42 H 0.97002 * 120.00216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.1786 -1.5159 1.9603 6 6 1.6385 -2.1637 3.0939 7 9 0.8026 -2.9471 3.8101 8 6 2.9564 -2.0124 3.4912 9 6 3.8099 -1.2079 2.7612 10 6 3.3486 -0.5556 1.6302 11 9 4.1832 0.2314 0.9167 12 7 2.0184 -0.6908 -1.1960 13 6 1.5824 -2.0601 -1.4804 14 6 2.8688 -0.0663 -2.0349 15 8 3.2308 1.0701 -1.7987 16 7 3.3185 -0.7020 -3.1349 17 6 4.2431 -0.0235 -4.0463 18 6 4.5894 -0.9443 -5.1880 19 8 4.1112 -2.0580 -5.2353 20 7 5.4312 -0.5307 -6.1558 21 6 5.7458 -1.3683 -7.1947 22 1 5.3194 -2.3596 -7.2372 23 6 6.6133 -0.9416 -8.1927 24 7 7.1326 0.2643 -8.1407 25 14 7.0414 -2.0825 -9.6086 26 1 6.3312 -3.3751 -9.4348 27 1 6.6269 -1.4579 -10.8904 28 1 8.5069 -2.3219 -9.6256 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.1515 -1.6360 1.6489 33 1 3.3162 -2.5209 4.3735 34 1 4.8370 -1.0875 3.0728 35 1 0.7324 -2.0366 -2.1622 36 1 2.4012 -2.6142 -1.9395 37 1 1.2894 -2.5485 -0.5510 38 1 3.0299 -1.6088 -3.3231 39 1 3.7719 0.8781 -4.4374 40 1 5.1519 0.2458 -3.5080 41 1 5.8140 0.3598 -6.1178 42 1 7.7379 0.5623 -8.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358282365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -141.520923 kcal Electronic energy + Delta-G solvation = -29406.206588 eV Core-core repulsion = 24828.927906 eV Total energy + Delta-G solvation = -4577.278682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.94605 -49.93200 -41.58876 -40.35850 -39.78112 -37.22109 -36.25996 -35.42861 -33.62042 -33.30682 -31.16631 -30.31759 -29.08301 -27.94666 -26.46890 -25.27655 -23.54172 -22.61303 -21.39138 -20.79182 -20.12901 -19.40087 -18.81398 -18.29002 -18.06071 -17.66172 -17.24232 -17.04673 -16.83498 -16.55580 -16.34316 -16.03161 -15.97275 -15.40297 -15.39024 -15.25440 -15.10509 -14.76488 -14.42843 -14.12247 -13.98854 -13.75606 -13.55567 -13.52241 -13.29937 -13.18738 -12.94728 -12.91718 -12.88428 -12.44844 -12.12496 -12.10875 -12.05365 -11.58332 -11.33655 -10.56523 -10.30401 -10.24524 -10.10046 -9.70202 -9.54944 -8.51289 -6.01579 -0.16802 -0.04683 1.34946 1.42159 1.50856 1.58498 1.88492 2.07400 2.26315 2.35217 2.86611 3.08531 3.15855 3.16295 3.19150 3.40584 3.55893 3.95145 4.04754 4.13725 4.16349 4.19845 4.25978 4.41427 4.43801 4.57571 4.60169 4.74825 4.81424 4.87239 4.92781 4.94472 5.01627 5.04519 5.27003 5.30703 5.38667 5.47498 5.73385 5.82971 5.91929 6.47281 6.86598 7.02993 7.40726 7.49230 7.93422 8.65955 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002188 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.504267 B =12795.266076 C =12827.306604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.192 3.808 3 H 0.089 0.911 4 C -0.112 4.112 5 C -0.107 4.107 6 C 0.082 3.918 7 F -0.137 7.137 8 C -0.113 4.113 9 C -0.127 4.127 10 C 0.079 3.921 11 F -0.146 7.146 12 N -0.619 5.619 13 C 0.072 3.928 14 C 0.704 3.296 15 O -0.622 6.622 16 N -0.724 5.724 17 C 0.141 3.859 18 C 0.435 3.565 19 O -0.623 6.623 20 N -0.559 5.559 21 C -0.335 4.335 22 H 0.087 0.913 23 C -0.012 4.012 24 N -0.917 5.917 25 Si 0.998 3.002 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.174 0.826 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.409 0.591 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 -3.377 23.582 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.089 3.911 3 H 0.107 0.893 4 C -0.114 4.114 5 C -0.126 4.126 6 C 0.063 3.937 7 F -0.115 7.115 8 C -0.132 4.132 9 C -0.146 4.146 10 C 0.059 3.941 11 F -0.124 7.124 12 N -0.356 5.356 13 C -0.070 4.070 14 C 0.405 3.595 15 O -0.503 6.503 16 N -0.383 5.383 17 C 0.013 3.987 18 C 0.222 3.778 19 O -0.511 6.511 20 N -0.195 5.195 21 C -0.465 4.465 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.557 5.557 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.191 0.809 33 H 0.188 0.812 34 H 0.178 0.822 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.249 0.751 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.849 -3.193 23.544 27.011 hybrid contribution 0.798 -0.147 -0.981 1.273 sum -12.051 -3.340 22.563 25.797 Atomic orbital electron populations 1.22209 0.90929 1.04255 1.03883 1.19739 0.96230 0.95750 0.79403 0.89331 1.20074 0.92310 1.00586 0.98478 1.21199 1.02117 0.95762 0.93539 1.17741 0.88750 0.94621 0.92620 1.91530 1.70896 1.72154 1.76943 1.21290 0.91301 0.98987 1.01614 1.21227 1.02395 0.97324 0.93651 1.18126 0.88589 0.94426 0.92937 1.91566 1.71124 1.72140 1.77598 1.47058 1.48166 1.16442 1.23919 1.21915 1.00705 0.80969 1.03456 1.15916 0.79422 0.84079 0.80078 1.90872 1.63804 1.18913 1.76664 1.44836 1.49898 1.19506 1.24071 1.20576 0.94509 0.94428 0.89237 1.20359 0.83323 0.88682 0.85448 1.90459 1.58033 1.23150 1.79468 1.41843 1.40197 1.16684 1.20736 1.19776 1.26838 0.98499 1.01359 0.89513 1.26150 0.95716 0.98192 1.01167 1.69687 1.31432 1.18508 1.36043 0.84799 0.78194 0.77846 0.77059 1.19355 1.19602 1.19667 0.89602 0.88979 0.91923 0.80886 0.81173 0.82215 0.90738 0.92136 0.88364 0.75124 0.89038 0.89466 0.76729 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 7.97 71.98 0.57 -1.44 16 2 C 0.19 4.03 2.54 44.25 0.11 4.14 16 3 H 0.09 2.41 6.82 -2.39 -0.02 2.39 16 4 C -0.11 -2.07 4.72 -19.82 -0.09 -2.17 16 5 C -0.11 -1.40 8.47 22.31 0.19 -1.21 16 6 C 0.08 1.10 7.30 22.37 0.16 1.26 16 7 F -0.14 -1.94 17.27 44.97 0.78 -1.17 16 8 C -0.11 -1.38 10.02 22.31 0.22 -1.16 16 9 C -0.13 -2.01 10.02 22.31 0.22 -1.78 16 10 C 0.08 1.74 7.24 22.37 0.16 1.90 16 11 F -0.15 -4.37 16.73 44.97 0.75 -3.62 16 12 N -0.62 -15.41 2.75 -844.84 -2.33 -17.74 16 13 C 0.07 1.32 8.97 127.77 1.15 2.47 16 14 C 0.70 23.86 8.28 179.05 1.48 25.35 16 15 O -0.62 -25.10 15.68 -3.98 -0.06 -25.16 16 16 N -0.72 -25.47 5.39 -482.31 -2.60 -28.08 16 17 C 0.14 5.45 6.15 85.63 0.53 5.98 16 18 C 0.43 20.48 7.85 87.66 0.69 21.17 16 19 O -0.62 -32.45 15.24 -3.08 -0.05 -32.50 16 20 N -0.56 -28.50 5.29 -306.98 -1.62 -30.13 16 21 C -0.34 -18.60 9.68 84.04 0.81 -17.78 16 22 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 25 Si 1.00 41.90 29.55 68.60 2.03 43.93 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 H 0.09 0.74 6.11 -2.39 -0.01 0.73 16 30 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.17 1.36 5.96 -2.91 -0.02 1.35 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.27 6.65 -2.38 -0.02 1.26 16 37 H 0.10 1.29 6.81 -2.39 -0.02 1.27 16 38 H 0.41 14.00 5.28 -92.70 -0.49 13.51 16 39 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -71.20 364.81 3.74 -67.46 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.12 Total: 39.23 kcal Atomic # 6 Polarization: 29.91 SS G_CDS: 6.68 Total: 36.59 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -6.27 Total: -124.75 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.11 Total: -57.66 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.53 Total: -4.78 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.20 3.74 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358282365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.064 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds